Structural Insights into the Regulation Mechanism of Small GTPases by GEFs
Open accessAbstract
Small GTPases are key regulators of cellular events, and their dysfunction causes many types of cancer. They serve as molecular switches by cycling between inactive guanosine diphosphate (GDP)-bound and active guanosine triphosphate (GTP)-bound states. GTPases are deactivated by GTPase-activating proteins (GAPs) and are activated by guanine-nucleotide exchange factors (GEFs). The intrinsic GTP hydrolysis activity of small GTPases is generally low and is accelerated by GAPs. GEFs promote GDP dissociation from small GTPases to allow for GTP binding, which results in a conformational change of two highly flexible segments, called switch I and switch II, that enables binding of the gamma phosphate and allows small GTPases to interact with downstream effectors. For several decades, crystal structures of many GEFs and GAPs have been reported and have shown tremendous structural diversity. In this review, we focus on the latest structural studies of GEFs. Detailed pictures of the variety of GEF mechanisms at atomic resolution can provide insights into new approaches for drug discovery.
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Claims other papers make about this one
Each is checked against this paper’s own text: does it say what the citing paper says it does?
GEFs catalyze the exchange of GDP for GTP, leading to conformational changes in switch I and switch II regions required for activation of small GTPases.
“In response to extracellular stimuli emanating from cell surface receptors, guanine nucleotide exchange factors (GEFs) catalyze the exchange of GDP for GTP, leading to the conformational changes in the switch I and switch II regions required for activation of the small GTPases.”
From RhoA Signaling in Neurodegenerative Diseases (2022) · cites this paper as [14]
GAPs enhance the intrinsic GTPase activity of small GTPases, resulting in GTP hydrolysis to GDP and inorganic phosphate and inactivation of the GTPases.
“Conversely, GTPase-activating proteins (GAPs) enhance the relatively slow intrinsic GTPase activity of the small GTPases, resulting in GTP hydrolysis to GDP and inorganic phosphate (Pi) and inactivation of the GTPases [5,14].”
From RhoA Signaling in Neurodegenerative Diseases (2022) · cites this paper as [14]
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
Cites
Hillig, R. C., Sautier, B., Schroeder, J., Moosmayer, D., Hilpmann, A., Stegmann, C. M., Werbeck, N. D., Briem, H., Boemer, U., Weiske, J., et al. (2019) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1812963116 · Cited by 388 · see citing works
Crystal structure of Rac1 in complex with the guanine nucleotide exchange region of Tiam1
Worthylake, D. K., Rossman, K. L., & Sondek, J. (2000) · Nature · doi:10.1038/35047014 · Cited by 355 · see citing works
Flagged first, then by citations
Research works printed but not linked: 129
- [1]Wittinghofer A. Vetter I.R. Structure-function relationships of the G domain, a canonical switch motif Ann. Rev. Biochem. 2011 80 943 971 10.1146/annurev-biochem-062708-134043 21675921 · DOI
- [2]Feinberg A.P. Vogelstein B. Droller M.J. Baylin S.B. Nelkin B.D. Mutation affecting the 12th amino acid of the c-Ha-ras oncogene product occurs infrequently in human cancer Science 1983 220 1175 1177 10.1126/science.6304875 6304875 · DOI
- [3]Vetter I.R. Wittinghofer A. The guanine nucleotide-binding switch in three dimensions Science 2001 294 1299 1304 10.1126/science.1062023 11701921 · DOI · Paper page
- [4]Cherfils J. Zeghouf M. Regulation of small GTPases by GEFs, GAPs, and GDIs Physiol. Rev. 2013 93 269 309 10.1152/physrev.00003.2012 23303910 · DOI · Paper page
- [5]Bos J.L. Rehmann H. Wittinghofer A. GEFs and GAPs: Critical elements in the control of small G proteins Cell 2007 129 865 877 10.1016/j.cell.2007.05.018 17540168 · DOI · Paper page
- [6]Reiss Y. Goldstein J.L. Seabra M.C. Casey P.J. Brown M.S. Inhibition of purified p21ras farnesyl: Protein transferase by Cys-AAX tetrapeptides Cell 1990 62 81 88 10.1016/0092-8674(90)90242-7 2194674 · DOI
- [7]Seabra M.C. Reiss Y. Casey P.J. Brown M.S. Goldstein J.L. Protein farnesyltransferase and geranylgeranyltransferase share a common alpha subunit Cell 1991 65 429 434 10.1016/0092-8674(91)90460-G 2018975 · DOI
- [8]Seabra M.C. Goldstein J.L. Sudhof T.C. Brown M.S. Rab geranylgeranyl transferase. A multisubunit enzyme that prenylates GTP-binding proteins terminating in Cys-X-Cys or Cys-Cys J. Biol. Chem. 1992 267 14497 14503 1321151
- [9]Casey P.J. Seabra M.C. Protein prenyltransferases J. Biol. Chem. 1996 271 5289 5292 10.1074/jbc.271.10.5289 8621375 · DOI
- [10]Mitchell A.L. Attwood T.K. Babbitt P.C. Blum M. Bork P. Bridge A. Brown S.D. Chang H.Y. El-Gebali S. Fraser M.I. InterPro in 2019: Improving coverage, classification and access to protein sequence annotations Nucleic Acids Res. 2019 47 D351 D360 10.1093/nar/gky1100 30398656 PMC6323941 · DOI · Paper page
- [11]Valencia A. Chardin P. Wittinghofer A. Sander C. The ras protein family: Evolutionary tree and role of conserved amino acids Biochemistry 1991 30 4637 4648 10.1021/bi00233a001 2029511 · DOI
- [12]Walker J.E. Saraste M. Runswick M.J. Gay N.J. Distantly related sequences in the alpha- and beta-subunits of ATP synthase, myosin, kinases and other ATP-requiring enzymes and a common nucleotide binding fold Embo J. 1982 1 945 951 10.1002/j.1460-2075.1982.tb01276.x 6329717 PMC553140 · DOI · Paper page
- [13]Prive G.G. Milburn M.V. Tong L. de Vos A.M. Yamaizumi Z. Nishimura S. Kim S.H. X-ray crystal structures of transforming p21 ras mutants suggest a transition-state stabilization mechanism for GTP hydrolysis Proc. Natl. Acad. Sci. USA 1992 89 3649 3653 10.1073/pnas.89.8.3649 1565661 PMC48926 · DOI
- [14]Rensland H. John J. Linke R. Simon I. Schlichting I. Wittinghofer A. Goody R.S. Substrate and product structural requirements for binding of nucleotides to H-ras p21: The mechanism of discrimination between guanosine and adenosine nucleotides Biochemistry 1995 34 593 599 10.1021/bi00002a026 7819254 · DOI
- [15]Milburn M.V. Tong L. deVos A.M. Brunger A. Yamaizumi Z. Nishimura S. Kim S.H. Molecular switch for signal transduction: Structural differences between active and inactive forms of protooncogenic ras proteins Science 1990 247 939 945 10.1126/science.2406906 2406906 · DOI
- [16]Pai E.F. Kabsch W. Krengel U. Holmes K.C. John J. Wittinghofer A. Structure of the guanine-nucleotide-binding domain of the Ha-ras oncogene product p21 in the triphosphate conformation Nature 1989 341 209 214 10.1038/341209a0 2476675 · DOI
- [17]Huang L. Hofer F. Martin G.S. Kim S.H. Structural basis for the interaction of Ras with RalGDS Nat. Struct. Biol. 1998 5 422 426 10.1038/nsb0698-422 9628477 · DOI
- [18]Boriack-Sjodin P.A. Margarit S.M. Bar-Sagi D. Kuriyan J. The structural basis of the activation of Ras by Sos Nature 1998 394 337 343 10.1038/28548 9690470 · DOI · Paper page
- [19]Kumar S. Stecher G. Tamura K. MEGA7: Molecular Evolutionary Genetics Analysis version 7.0 for bigger datasets Mol. Biol. Evol. 2016 33 1870 1874 10.1093/molbev/msw054 27004904 PMC8210823 · DOI
- [20]Chardin P. Camonis J.H. Gale N.W. van Aelst L. Schlessinger J. Wigler M.H. Bar-Sagi D. Human Sos1: A guanine nucleotide exchange factor for Ras that binds to GRB2 Science 1993 260 1338 1343 10.1126/science.8493579 8493579 · DOI
- [21]Crechet J.B. Poullet P. Mistou M.Y. Parmeggiani A. Camonis J. Boy-Marcotte E. Damak F. Jacquet M. Enhancement of the GDP-GTP exchange of RAS proteins by the carboxyl-terminal domain of SCD25 Science 1990 248 866 868 10.1126/science.2188363 2188363 · DOI
- [22]Popovic M. Schouten A. Rensen-de Leeuw M. Rehmann H. The structure of the Guanine Nucleotide Exchange Factor Rlf in complex with the small G-protein Ral identifies conformational intermediates of the exchange reaction and the basis for the selectivity J. Struct. Biol. 2016 193 106 114 10.1016/j.jsb.2015.12.006 26687416 · DOI
- [23]Vercoulen Y. Kondo Y. Iwig J.S. Janssen A.B. White K.A. Amini M. Barber D.L. Kuriyan J. Roose J.P. A Histidine pH sensor regulates activation of the Ras-specific guanine nucleotide exchange factor RasGRP1 Elife 2017 6 10.7554/eLife.29002 28952923 PMC5643099 · DOI
- [24]Popovic M. Rensen-de Leeuw M. Rehmann H. Selectivity of CDC25 homology domain-containing guanine nucleotide exchange factors J. Mol. Biol. 2013 425 2782 2794 10.1016/j.jmb.2013.04.031 23659792 · DOI
- [25]Abbott J.R. Hodges T.R. Daniels R.N. Patel P.A. Kennedy J.P. Howes J.E. Akan D.T. Burns M.C. Sai J. Sobolik T. Discovery of Aminopiperidine Indoles That Activate the Guanine Nucleotide Exchange Factor SOS1 and Modulate RAS Signaling J. Med. Chem. 2018 61 6002 6017 10.1021/acs.jmedchem.8b00360 29856609 · DOI
- [26]Hodges T.R. Abbott J.R. Little A.J. Sarkar D. Salovich J.M. Howes J.E. Akan D.T. Sai J. Arnold A.L. Browning C. Discovery and Structure-Based Optimization of Benzimidazole-Derived Activators of SOS1-Mediated Nucleotide Exchange on RAS J. Med. Chem. 2018 61 8875 8894 10.1021/acs.jmedchem.8b01108 30205005 PMC8314423 · DOI
- [27]Burns M.C. Howes J.E. Sun Q. Little A.J. Camper D.V. Abbott J.R. Phan J. Lee T. Waterson A.G. Rossanese O.W. High-throughput screening identifies small molecules that bind to the RAS:SOS:RAS complex and perturb RAS signaling Anal. Biochem. 2018 548 44 52 10.1016/j.ab.2018.01.025 29444450 PMC5935105 · DOI
- [29]Eva A. Vecchio G. Rao C.D. Tronick S.R. Aaronson S.A. The predicted DBL oncogene product defines a distinct class of transforming proteins Proc. Natl. Acad. Sci. USA 1988 85 2061 2065 10.1073/pnas.85.7.2061 3281159 PMC279928 · DOI
- [30]Hart M.J. Eva A. Evans T. Aaronson S.A. Cerione R.A. Catalysis of guanine nucleotide exchange on the CDC42Hs protein by the dbl oncogene product Nature 1991 354 311 314 10.1038/354311a0 1956381 · DOI
- [32]Yang J. Zhang Z. Roe S.M. Marshall C.J. Barford D. Activation of Rho GTPases by DOCK exchange factors is mediated by a nucleotide sensor Science 2009 325 1398 1402 10.1126/science.1174468 19745154 · DOI · Paper page
- [33]Kulkarni K. Yang J. Zhang Z. Barford D. Multiple factors confer specific Cdc42 and Rac protein activation by dedicator of cytokinesis (DOCK) nucleotide exchange factors J. Biol. Chem. 2011 286 25341 25351 10.1074/jbc.M111.236455 21613211 PMC3137105 · DOI · Paper page
- [34]Harada Y. Tanaka Y. Terasawa M. Pieczyk M. Habiro K. Katakai T. Hanawa-Suetsugu K. Kukimoto-Niino M. Nishizaki T. Shirouzu M. DOCK8 is a Cdc42 activator critical for interstitial dendritic cell migration during immune responses Blood 2012 119 4451 4461 10.1182/blood-2012-01-407098 22461490 PMC3418773 · DOI · Paper page
- [35]Kukimoto-Niino M. Tsuda K. Ihara K. Mishima-Tsumagari C. Honda K. Ohsawa N. Shirouzu M. Structural Basis for the Dual Substrate Specificity of DOCK7 Guanine Nucleotide Exchange Factor Structure 2019 27 741 748.e3 10.1016/j.str.2019.02.001 30853411 · DOI · Paper page
- [36]Mucha E. Fricke I. Schaefer A. Wittinghofer A. Berken A. Rho proteins of plants--functional cycle and regulation of cytoskeletal dynamics Eur. J. Cell Biol. 2011 90 934 943 10.1016/j.ejcb.2010.11.009 21277045 · DOI
- [37]Thomas C. Fricke I. Scrima A. Berken A. Wittinghofer A. Structural evidence for a common intermediate in small G protein-GEF reactions Mol. Cell 2007 25 141 149 10.1016/j.molcel.2006.11.023 17218277 · DOI
- [38]Thomas C. Fricke I. Weyand M. Berken A. 3D structure of a binary ROP-PRONE complex: The final intermediate for a complete set of molecular snapshots of the RopGEF reaction Biol. Chem. 2009 390 427 435 10.1515/BC.2009.049 19335195 · DOI
- [39]Yamamoto T. Kaibuchi K. Mizuno T. Hiroyoshi M. Shirataki H. Takai Y. Purification and characterization from bovine brain cytosol of proteins that regulate the GDP/GTP exchange reaction of smg p21s, ras p21-like GTP-binding proteins J. Biol. Chem. 1990 265 16626 16634 2118909
- [40]Mizuno T. Kaibuchi K. Yamamoto T. Kawamura M. Sakoda T. Fujioka H. Matsuura Y. Takai Y. A stimulatory GDP/GTP exchange protein for smg p21 is active on the post-translationally processed form of c-Ki-ras p21 and rhoA p21 Proc. Natl. Acad. Sci. USA 1991 88 6442 6446 10.1073/pnas.88.15.6442 1907371 PMC52101 · DOI
- [41]Hamel B. Monaghan-Benson E. Rojas R.J. Temple B.R. Marston D.J. Burridge K. Sondek J. SmgGDS is a guanine nucleotide exchange factor that specifically activates RhoA and RhoC J. Biol. Chem. 2011 286 12141 12148 10.1074/jbc.M110.191122 21242305 PMC3069418 · DOI · Paper page
- [42]Berg T.J. Gastonguay A.J. Lorimer E.L. Kuhnmuench J.R. Li R. Fields A.P. Williams C.L. Splice variants of SmgGDS control small GTPase prenylation and membrane localization J. Biol. Chem. 2010 285 35255 35266 10.1074/jbc.M110.129916 20709748 PMC2975149 · DOI
- [43]Schuld N.J. Vervacke J.S. Lorimer E.L. Simon N.C. Hauser A.D. Barbieri J.T. Distefano M.D. Williams C.L. The chaperone protein SmgGDS interacts with small GTPases entering the prenylation pathway by recognizing the last amino acid in the CAAX motif J. Biol. Chem. 2014 289 6862 6876 10.1074/jbc.M113.527192 24415755 PMC3945348 · DOI
- [44]Williams C.L. A new signaling paradigm to control the prenylation and trafficking of small GTPases Cell Cycle 2013 12 2933 2934 10.4161/cc.26230 23974087 PMC3875666 · DOI
- [45]Shimizu H. Toma-Fukai S. Kontani K. Katada T. Shimizu T. GEF mechanism revealed by the structure of SmgGDS-558 and farnesylated RhoA complex and its implication for a chaperone mechanism Proc. Natl. Acad. Sci. USA 2018 115 9563 9568 10.1073/pnas.1804740115 30190425 PMC6156624 · DOI
- [46]Shimizu H. Toma-Fukai S. Saijo S. Shimizu N. Kontani K. Katada T. Shimizu T. Structure-based analysis of the guanine nucleotide exchange factor SmgGDS reveals armadillo-repeat motifs and key regions for activity and GTPase binding J. Biol. Chem. 2017 292 13441 13448 10.1074/jbc.M117.792556 28630045 PMC5555202 · DOI
- [47]Jaiswal M. Dvorsky R. Ahmadian M.R. Deciphering the molecular and functional basis of Dbl family proteins: A novel systematic approach toward classification of selective activation of the Rho family proteins J. Biol. Chem. 2013 288 4486 4500 10.1074/jbc.M112.429746 23255595 PMC3567697 · DOI · Paper page
- [48]Barr F. Lambright D.G. Rab GEFs and GAPs Curr. Opin. Cell Biol. 2010 22 461 470 10.1016/j.ceb.2010.04.007 20466531 PMC2929657 · DOI
- [49]Stenmark H. Rab GTPases as coordinators of vesicle traffic Nat. Rev. Mol. Cell Biol. 2009 10 513 525 10.1038/nrm2728 19603039 · DOI · Paper page
- [50]Muller M.P. Goody R.S. Molecular control of Rab activity by GEFs, GAPs and GDI Small GTPases 2018 9 5 21 10.1080/21541248.2016.1276999 28055292 PMC5902221 · DOI
- [51]Pereira-Leal J.B. Seabra M.C. The mammalian Rab family of small GTPases: Definition of family and subfamily sequence motifs suggests a mechanism for functional specificity in the Ras superfamily J. Mol. Biol. 2000 301 1077 1087 10.1006/jmbi.2000.4010 10966806 · DOI
- [52]Pereira-Leal J.B. Seabra M.C. Evolution of the Rab family of small GTP-binding proteins J. Mol. Biol. 2001 313 889 901 10.1006/jmbi.2001.5072 11697911 · DOI
- [53]Itzen A. Pylypenko O. Goody R.S. Alexandrov K. Rak A. Nucleotide exchange via local protein unfolding--structure of Rab8 in complex with MSS4 Embo J. 2006 25 1445 1455 10.1038/sj.emboj.7601044 16541104 PMC1440319 · DOI
- [54]Sato Y. Fukai S. Ishitani R. Nureki O. Crystal structure of the Sec4p.Sec2p complex in the nucleotide exchanging intermediate state Proc. Natl. Acad. Sci. USA 2007 104 8305 8310 10.1073/pnas.0701550104 17488829 PMC1895945 · DOI
- [55]Dong G. Medkova M. Novick P. Reinisch K.M. A catalytic coiled coil: Structural insights into the activation of the Rab GTPase Sec4p by Sec2p Mol. Cell 2007 25 455 462 10.1016/j.molcel.2007.01.013 17289591 PMC1847580 · DOI
- [56]Rinaldi F.C. Packer M. Collins R. New insights into the molecular mechanism of the Rab GTPase Sec4p activation BMC Struct. Biol. 2015 15 14 10.1186/s12900-015-0041-5 26263895 PMC4531439 · DOI
- [57]Delprato A. Lambright D.G. Structural basis for Rab GTPase activation by VPS9 domain exchange factors Nat. Struct. Mol. Biol. 2007 14 406 412 10.1038/nsmb1232 17450153 PMC2254184 · DOI
- [58]Cai Y. Chin H.F. Lazarova D. Menon S. Fu C. Cai H. Sclafani A. Rodgers D.W. De La Cruz E.M. Ferro-Novick S. The structural basis for activation of the Rab Ypt1p by the TRAPP membrane-tethering complexes Cell 2008 133 1202 1213 10.1016/j.cell.2008.04.049 18585354 PMC2465810 · DOI
- [59]Gray J.L. von Delft F. Brennan P. Targeting the Small GTPase Superfamily through their Regulatory Proteins Angew. Chem. Int. Ed. Engl. 2019 10.1002/anie.201900585 PMC7204875 30869179 · DOI
- [60]Guo Z. Hou X. Goody R.S. Itzen A. Intermediates in the guanine nucleotide exchange reaction of Rab8 protein catalyzed by guanine nucleotide exchange factors Rabin8 and GRAB J. Biol. Chem. 2013 288 32466 32474 10.1074/jbc.M113.498329 24072714 PMC3820881 · DOI
- [61]Zhang Z. Zhang T. Wang S. Gong Z. Tang C. Chen J. Ding J. Molecular mechanism for Rabex-5 GEF activation by Rabaptin-5 Elife 2014 3 10.7554/eLife.02687 PMC4102244 24957337 · DOI
- [62]Goto-Ito S. Morooka N. Yamagata A. Sato Y. Sato K. Fukai S. Structural basis of guanine nucleotide exchange for Rab11 by SH3BP5 Life Sci. Alliance 2019 2 10.26508/lsa.201900297 30872413 PMC6419104 · DOI
- [63]Jenkins M.L. Margaria J.P. Stariha J.T.B. Hoffmann R.M. McPhail J.A. Hamelin D.J. Boulanger M.J. Hirsch E. Burke J.E. Structural determinants of Rab11 activation by the guanine nucleotide exchange factor SH3BP5 Nat. Commun. 2018 9 3772 10.1038/s41467-018-06196-z 30217979 PMC6138693 · DOI
- [64]Cherfils J. Menetrey J. Mathieu M. Le Bras G. Robineau S. Beraud-Dufour S. Antonny B. Chardin P. Structure of the Sec7 domain of the Arf exchange factor ARNO Nature 1998 392 101 105 10.1038/32210 9510256 · DOI
- [65]Renault L. Guibert B. Cherfils J. Structural snapshots of the mechanism and inhibition of a guanine nucleotide exchange factor Nature 2003 426 525 530 10.1038/nature02197 14654833 · DOI
- [66]Weissman J.T. Plutner H. Balch W.E. The mammalian guanine nucleotide exchange factor mSec12 is essential for activation of the Sar1 GTPase directing endoplasmic reticulum export Traffic 2001 2 465 475 10.1034/j.1600-0854.2001.20704.x 11422940 · DOI
- [67]McMahon C. Studer S.M. Clendinen C. Dann G.P. Jeffrey P.D. Hughson F.M. The structure of Sec12 implicates potassium ion coordination in Sar1 activation J. Biol. Chem. 2012 287 43599 43606 10.1074/jbc.M112.420141 23109340 PMC3527946 · DOI
- [68]Renault L. Kuhlmann J. Henkel A. Wittinghofer A. Structural basis for guanine nucleotide exchange on Ran by the regulator of chromosome condensation (RCC1) Cell 2001 105 245 255 10.1016/S0092-8674(01)00315-4 11336674 · DOI
- [69]Nemergut M.E. Mizzen C.A. Stukenberg T. Allis C.D. Macara I.G. Chromatin docking and exchange activity enhancement of RCC1 by histones H2A and H2B Science 2001 292 1540 1543 10.1126/science.292.5521.1540 11375490 · DOI
- [70]Makde R.D. England J.R. Yennawar H.P. Tan S. Structure of RCC1 chromatin factor bound to the nucleosome core particle Nature 2010 467 562 566 10.1038/nature09321 20739938 PMC3168546 · DOI
- [71]Ding L. Lei Y. Han Y. Li Y. Ji X. Liu L. Vimar Is a Novel Regulator of Mitochondrial Fission through Miro PLoS Genet. 2016 12 e1006359 10.1371/journal.pgen.1006359 27716788 PMC5065127 · DOI
- [72]Margarit S.M. Sondermann H. Hall B.E. Nagar B. Hoelz A. Pirruccello M. Bar-Sagi D. Kuriyan J. Structural evidence for feedback activation by Ras.GTP of the Ras-specific nucleotide exchange factor SOS Cell 2003 112 685 695 10.1016/S0092-8674(03)00149-1 12628188 · DOI
- [73]Gureasko J. Kuchment O. Makino D.L. Sondermann H. Bar-Sagi D. Kuriyan J. Role of the histone domain in the autoinhibition and activation of the Ras activator Son of Sevenless Proc. Natl. Acad. Sci. USA 2010 107 3430 3435 10.1073/pnas.0913915107 20133692 PMC2816639 · DOI
- [74]Sondermann H. Soisson S.M. Boykevisch S. Yang S.S. Bar-Sagi D. Kuriyan J. Structural analysis of autoinhibition in the Ras activator Son of sevenless Cell 2004 119 393 405 10.1016/j.cell.2004.10.005 15507210 · DOI
- [75]Pacheco-Rodriguez G. Moss J. Vaughan M. Cytohesin-1: Structure, function, and ARF activation Methods Enzymol. 2005 404 184 195 10.1016/s0076-6879(05)04018-8 16413269 · DOI
- [76]DiNitto J.P. Delprato A. Gabe Lee M.T. Cronin T.C. Huang S. Guilherme A. Czech M.P. Lambright D.G. Structural basis and mechanism of autoregulation in 3-phosphoinositide-dependent Grp1 family Arf GTPase exchange factors Mol. Cell 2007 28 569 583 10.1016/j.molcel.2007.09.017 18042453 PMC2156038 · DOI
- [77]Malaby A.W. van den Berg B. Lambright D.G. Structural basis for membrane recruitment and allosteric activation of cytohesin family Arf GTPase exchange factors Proc. Natl. Acad. Sci. USA 2013 110 14213 14218 10.1073/pnas.1301883110 23940353 PMC3761562 · DOI
- [78]Rossman K.L. Der C.J. Sondek J. GEF means go: Turning on RHO GTPases with guanine nucleotide-exchange factors Nat. Rev. Mol. Cell Biol. 2005 6 167 180 10.1038/nrm1587 15688002 · DOI · Paper page
- [79]Soisson S.M. Nimnual A.S. Uy M. Bar-Sagi D. Kuriyan J. Crystal structure of the Dbl and pleckstrin homology domains from the human Son of sevenless protein Cell 1998 95 259 268 10.1016/S0092-8674(00)81756-0 9790532 · DOI
- [80]Nimnual A.S. Yatsula B.A. Bar-Sagi D. Coupling of Ras and Rac guanosine triphosphatases through the Ras exchanger Sos Science 1998 279 560 563 10.1126/science.279.5350.560 9438849 · DOI
- [81]Rossman K.L. Worthylake D.K. Snyder J.T. Siderovski D.P. Campbell S.L. Sondek J. A crystallographic view of interactions between Dbs and Cdc42: PH domain-assisted guanine nucleotide exchange Embo J. 2002 21 1315 1326 10.1093/emboj/21.6.1315 11889037 PMC125919 · DOI · Paper page
- [82]Derewenda U. Oleksy A. Stevenson A.S. Korczynska J. Dauter Z. Somlyo A.P. Otlewski J. Somlyo A.V. Derewenda Z.S. The crystal structure of RhoA in complex with the DH/PH fragment of PDZRhoGEF, an activator of the Ca(2+) sensitization pathway in smooth muscle Structure 2004 12 1955 1965 10.1016/j.str.2004.09.003 15530360 · DOI
- [83]Chhatriwala M.K. Betts L. Worthylake D.K. Sondek J. The DH and PH domains of Trio coordinately engage Rho GTPases for their efficient activation J. Mol. Biol. 2007 368 1307 1320 10.1016/j.jmb.2007.02.060 17391702 PMC1890047 · DOI
- [84]Baumeister M.A. Rossman K.L. Sondek J. Lemmon M.A. The Dbs PH domain contributes independently to membrane targeting and regulation of guanine nucleotide-exchange activity Biochem. J. 2006 400 563 572 10.1042/BJ20061020 17007612 PMC1698603 · DOI
- [85]Mitin N. Betts L. Yohe M.E. Der C.J. Sondek J. Rossman K.L. Release of autoinhibition of ASEF by APC leads to CDC42 activation and tumor suppression Nat. Struct. Mol. Biol. 2007 14 814 823 10.1038/nsmb1290 17704816 PMC2716141 · DOI
- [86]Murayama K. Shirouzu M. Kawasaki Y. Kato-Murayama M. Hanawa-Suetsugu K. Sakamoto A. Katsura Y. Suenaga A. Toyama M. Terada T. Crystal structure of the rac activator, Asef, reveals its autoinhibitory mechanism J. Biol. Chem. 2007 282 4238 4242 10.1074/jbc.C600234200 17190834 · DOI
- [87]Vigil D. Cherfils J. Rossman K.L. Der C.J. Ras superfamily GEFs and GAPs: Validated and tractable targets for cancer therapy? Nat. Rev. Cancer 2010 10 842 857 10.1038/nrc2960 21102635 PMC3124093 · DOI
- [88]Llorca O. Arias-Palomo E. Zugaza J.L. Bustelo X.R. Global conformational rearrangements during the activation of the GDP/GTP exchange factor Vav3 Embo J. 2005 24 1330 1340 10.1038/sj.emboj.7600617 15775967 PMC1142542 · DOI
- [89]Yu B. Martins I.R. Li P. Amarasinghe G.K. Umetani J. Fernandez-Zapico M.E. Billadeau D.D. Machius M. Tomchick D.R. Rosen M.K. Structural and energetic mechanisms of cooperative autoinhibition and activation of Vav1 Cell 2010 140 246 256 10.1016/j.cell.2009.12.033 20141838 PMC2825156 · DOI · Paper page
- [90]Chrencik J.E. Brooun A. Zhang H. Mathews I.I. Hura G.L. Foster S.A. Perry J.J. Streiff M. Ramage P. Widmer H. Structural basis of guanine nucleotide exchange mediated by the T-cell essential Vav1 J. Mol. Biol. 2008 380 828 843 10.1016/j.jmb.2008.05.024 18589439 PMC2620086 · DOI
- [91]Raaijmakers J.H. Bos J.L. Specificity in Ras and Rap signaling J. Biol. Chem. 2009 284 10995 10999 10.1074/jbc.R800061200 19091745 PMC2670103 · DOI
- [92]Li P. Martins I.R. Amarasinghe G.K. Rosen M.K. Internal dynamics control activation and activity of the autoinhibited Vav DH domain Nat. Struct. Mol. Biol. 2008 15 613 618 10.1038/nsmb.1428 18488041 PMC2512264 · DOI
- [93]Yohe M.E. Rossman K.L. Gardner O.S. Karnoub A.E. Snyder J.T. Gershburg S. Graves L.M. Der C.J. Sondek J. Auto-inhibition of the Dbl family protein Tim by an N-terminal helical motif J. Biol. Chem. 2007 282 13813 13823 10.1074/jbc.M700185200 17337446 · DOI · Paper page
- [94]Yohe M.E. Rossman K. Sondek J. Role of the C-terminal SH3 domain and N-terminal tyrosine phosphorylation in regulation of Tim and related Dbl-family proteins Biochemistry 2008 47 6827 6839 10.1021/bi702543p 18537266 PMC2655348 · DOI
- [95]Jackson L.P. Kelly B.T. McCoy A.J. Gaffry T. James L.C. Collins B.M. Honing S. Evans P.R. Owen D.J. A large-scale conformational change couples membrane recruitment to cargo binding in the AP2 clathrin adaptor complex Cell 2010 141 1220 1229 10.1016/j.cell.2010.05.006 20603002 PMC3655264 · DOI
- [96]Yamaguchi K. Imai K. Akamatsu A. Mihashi M. Hayashi N. Shimamoto K. Kawasaki T. SWAP70 functions as a Rac/Rop guanine nucleotide-exchange factor in rice Plant J. 2012 70 389 397 10.1111/j.1365-313X.2011.04874.x 22142166 · DOI
- [97]Gu Y. Li S. Lord E.M. Yang Z. Members of a novel class of Arabidopsis Rho guanine nucleotide exchange factors control Rho GTPase-dependent polar growth Plant. Cell 2006 18 366 381 10.1105/tpc.105.036434 16415208 PMC1356545 · DOI
- [98]Hanawa-Suetsugu K. Kukimoto-Niino M. Mishima-Tsumagari C. Akasaka R. Ohsawa N. Sekine S. Ito T. Tochio N. Koshiba S. Kigawa T. Structural basis for mutual relief of the Rac guanine nucleotide exchange factor DOCK2 and its partner ELMO1 from their autoinhibited forms Proc. Natl. Acad. Sci. USA 2012 109 3305 3310 10.1073/pnas.1113512109 22331897 PMC3295310 · DOI · Paper page
- [99]Lu M. Kinchen J.M. Rossman K.L. Grimsley C. deBakker C. Brugnera E. Tosello-Trampont A.C. Haney L.B. Klingele D. Sondek J. PH domain of ELMO functions in trans to regulate Rac activation via Dock180 Nat. Struct. Mol. Biol. 2004 11 756 762 10.1038/nsmb800 15247908 · DOI
- [100]Lu M. Kinchen J.M. Rossman K.L. Grimsley C. Hall M. Sondek J. Hengartner M.O. Yajnik V. Ravichandran K.S. A Steric-inhibition model for regulation of nucleotide exchange via the Dock180 family of GEFs Curr. Biol. 2005 15 371 377 10.1016/j.cub.2005.01.050 15723800 · DOI · Paper page
- [101]Medina F. Carter A.M. Dada O. Gutowski S. Hadas J. Chen Z. Sternweis P.C. Activated RhoA is a positive feedback regulator of the Lbc family of Rho guanine nucleotide exchange factor proteins J. Biol. Chem. 2013 288 11325 11333 10.1074/jbc.M113.450056 23493395 PMC3630898 · DOI
- [102]Chen Z. Medina F. Liu M.Y. Thomas C. Sprang S.R. Sternweis P.C. Activated RhoA binds to the pleckstrin homology (PH) domain of PDZ-RhoGEF, a potential site for autoregulation J. Biol. Chem. 2010 285 21070 21081 10.1074/jbc.M110.122549 20430886 PMC2898337 · DOI
- [103]Dada O. Gutowski S. Brautigam C.A. Chen Z. Sternweis P.C. Direct regulation of p190RhoGEF by activated Rho and Rac GTPases J. Struct. Biol. 2018 202 13 24 10.1016/j.jsb.2017.11.014 29196061 PMC5835413 · DOI
- [104]Lin Q. Yang W. Baird D. Feng Q. Cerione R.A. Identification of a DOCK180-related guanine nucleotide exchange factor that is capable of mediating a positive feedback activation of Cdc42 J. Biol. Chem. 2006 281 35253 35262 10.1074/jbc.M606248200 16968698 · DOI
- [105]De Rooij J. Zwartkruis F.J. Verheijen M.H. Cool R.H. Nijman S.M. Wittinghofer A. Bos J.L. Epac is a Rap1 guanine-nucleotide-exchange factor directly activated by cyclic AMP Nature 1998 396 474 477 10.1038/24884 9853756 · DOI
- [106]Kawasaki H. Springett G.M. Mochizuki N. Toki S. Nakaya M. Matsuda M. Housman D.E. Graybiel A.M. A family of cAMP-binding proteins that directly activate Rap1 Science 1998 282 2275 2279 10.1126/science.282.5397.2275 9856955 · DOI
- [107]Burton J.L. Burns M.E. Gatti E. Augustine G.J. De Camilli P. Specific interactions of Mss4 with members of the Rab GTPase subfamily Embo J. 1994 13 5547 5558 10.1002/j.1460-2075.1994.tb06892.x 7988552 PMC395518 · DOI
- [108]Coppola T. Perret-Menoud V. Gattesco S. Magnin S. Pombo I. Blank U. Regazzi R. The death domain of Rab3 guanine nucleotide exchange protein in GDP/GTP exchange activity in living cells Biochem. J. 2002 362 273 279 10.1042/bj3620273 11853534 PMC1222386 · DOI
- [109]Muller-Pillasch F. Zimmerhackl F. Lacher U. Schultz N. Hameister H. Varga G. Friess H. Buchler M. Adler G. Gress T.M. Cloning of novel transcripts of the human guanine-nucleotide-exchange factor Mss4: In situ chromosomal mapping and expression in pancreatic cancer Genomics 1997 46 389 396 10.1006/geno.1997.5049 9441742 · DOI
- [110]Wada M. Nakanishi H. Satoh A. Hirano H. Obaishi H. Matsuura Y. Takai Y. Isolation and characterization of a GDP/GTP exchange protein specific for the Rab3 subfamily small G proteins J. Biol. Chem. 1997 272 3875 3878 10.1074/jbc.272.7.3875 9020086 · DOI
- [111]Walch-Solimena C. Collins R.N. Novick P.J. Sec2p mediates nucleotide exchange on Sec4p and is involved in polarized delivery of post-Golgi vesicles J. Cell Biol. 1997 137 1495 1509 10.1083/jcb.137.7.1495 9199166 PMC2137815 · DOI
- [112]Esters H. Alexandrov K. Iakovenko A. Ivanova T. Thoma N. Rybin V. Zerial M. Scheidig A.J. Goody R.S. Vps9, Rabex-5 and DSS4: Proteins with weak but distinct nucleotide-exchange activities for Rab proteins J. Mol. Biol. 2001 310 141 156 10.1006/jmbi.2001.4735 11419942 · DOI
- [113]Burton J. Roberts D. Montaldi M. Novick P. De Camilli P. A mammalian guanine-nucleotide-releasing protein enhances function of yeast secretory protein Sec4 Nature 1993 361 464 467 10.1038/361464a0 8429887 · DOI
- [114]Moya M. Roberts D. Novick P. DSS4-1 is a dominant suppressor of sec4-8 that encodes a nucleotide exchange protein that aids Sec4p function Nature 1993 361 460 463 10.1038/361460a0 8429886 · DOI
- [115]Nuoffer C. Wu S.K. Dascher C. Balch W.E. Mss4 does not function as an exchange factor for Rab in endoplasmic reticulum to Golgi transport Mol. Biol. Cell 1997 8 1305 1316 10.1091/mbc.8.7.1305 9243509 PMC276154 · DOI
- [116]Gulbranson D.R. Davis E.M. Demmitt B.A. Ouyang Y. Ye Y. Yu H. Shen J. RABIF/MSS4 is a Rab-stabilizing holdase chaperone required for GLUT4 exocytosis Proc. Natl. Acad. Sci. USA 2017 114 E8224 E8233 10.1073/pnas.1712176114 28894007 PMC5625932 · DOI · Paper page
- [117]Yu H. Schreiber S.L. Structure of guanine-nucleotide-exchange factor human Mss4 and identification of its Rab-interacting surface Nature 1995 376 788 791 10.1038/376788a0 7651540 · DOI
- [118]Zhu Z. Dumas J.J. Lietzke S.E. Lambright D.G. A helical turn motif in Mss4 is a critical determinant of Rab binding and nucleotide release Biochemistry 2001 40 3027 3036 10.1021/bi002680o 11258916 · DOI
- [119]Williams C.L. The polybasic region of Ras and Rho family small GTPases: A regulator of protein interactions and membrane association and a site of nuclear localization signal sequences Cell Signal. 2003 15 1071 1080 10.1016/S0898-6568(03)00098-6 14575862 · DOI
- [120]Ogita Y. Egami S. Ebihara A. Ueda N. Katada T. Kontani K. Di-Ras2 Protein Forms a Complex with SmgGDS Protein in Brain Cytosol in Order to Be in a Low Affinity State for Guanine Nucleotides J. Biol. Chem. 2015 290 20245 20256 10.1074/jbc.M115.637769 26149690 PMC4536433 · DOI
- [121]Bergom C. Hauser A.D. Rymaszewski A. Gonyo P. Prokop J.W. Jennings B.C. Lawton A.J. Frei A. Lorimer E.L. Aguilera-Barrantes I. The Tumor-suppressive Small GTPase DiRas1 Binds the Noncanonical Guanine Nucleotide Exchange Factor SmgGDS and Antagonizes SmgGDS Interactions with Oncogenic Small GTPases J. Biol. Chem. 2016 291 6534 6545 10.1074/jbc.M115.696831 26814130 PMC4813585 · DOI
- [122]Tew G.W. Lorimer E.L. Berg T.J. Zhi H. Li R. Williams C.L. SmgGDS regulates cell proliferation, migration, and NF-kappaB transcriptional activity in non-small cell lung carcinoma J. Biol. Chem. 2008 283 963 976 10.1074/jbc.M707526200 17951244 · DOI
- [123]Schuld N.J. Hauser A.D. Gastonguay A.J. Wilson J.M. Lorimer E.L. Williams C.L. SmgGDS-558 regulates the cell cycle in pancreatic, non-small cell lung, and breast cancers Cell Cycle 2014 13 941 952 10.4161/cc.27804 24552806 PMC3984317 · DOI
- [124]Zhi H. Yang X.J. Kuhnmuench J. Berg T. Thill R. Yang H. See W.A. Becker C.G. Williams C.L. Li R. SmgGDS is up-regulated in prostate carcinoma and promotes tumour phenotypes in prostate cancer cells J. Pathol. 2009 217 389 397 10.1002/path.2456 18973191 · DOI
- [125]Hauser A.D. Bergom C. Schuld N.J. Chen X. Lorimer E.L. Huang J. Mackinnon A.C. Williams C.L. The SmgGDS splice variant SmgGDS-558 is a key promoter of tumor growth and RhoA signaling in breast cancer Mol. Cancer Res. 2014 12 130 142 10.1158/1541-7786.MCR-13-0362 24197117 PMC4285378 · DOI
- [126]Peifer M. Berg S. Reynolds A.B. A repeating amino acid motif shared by proteins with diverse cellular roles Cell 1994 76 789 791 10.1016/0092-8674(94)90353-0 7907279 · DOI
- [127]Kuhlmann N. Wroblowski S. Knyphausen P. de Boor S. Brenig J. Zienert A.Y. Meyer-Teschendorf K. Praefcke G.J. Nolte H. Krüger M. Structural and mechanistic insights into the regulation of the fundamental Rho regulator RhoGDIα by lysine acetylation J. Biol. Chem. 2016 291 5484 5499 10.1074/jbc.M115.707091 26719334 PMC4786691 · DOI
- [128]Garcia-Mata R. Boulter E. Burridge K. The ‘invisible hand’: Regulation of RHO GTPases by RHOGDIs Nat. Rev. Mol. Cell Biol. 2011 12 493 10.1038/nrm3153 21779026 PMC3260518 · DOI · Paper page
- [129]Dharmaiah S. Bindu L. Tran T.H. Gillette W.K. Frank P.H. Ghirlando R. Nissley D.V. Esposito D. McCormick F. Stephen A.G. Structural basis of recognition of farnesylated and methylated KRAS4b by PDEδ Proc. Natl. Acad. Sci. USA 2016 113 E6766 E6775 10.1073/pnas.1615316113 27791178 PMC5098621 · DOI
- [130]Wang M. Casey P.J. Protein prenylation: Unique fats make their mark on biology Nat. Rev. Mol. Cell Biol. 2016 17 110 10.1038/nrm.2015.11 26790532 · DOI
- [131]Ahearn I.M. Haigis K. Bar-Sagi D. Philips M.R. Regulating the regulator: Post-translational modification of RAS Nat. Rev. Mol. Cell Biol. 2012 13 39 10.1038/nrm3255 PMC3879958 22189424 · DOI
Cited by
Sorted by citations
RhoA Signaling in Neurodegenerative Diseases
Schmidt, S. I., Blaabjerg, M., Freude, K., & Meyer, M. (2022) · Cells · doi:10.3390/cells11091520 · Cited by 110 · see citing works
- Authors
- Toma-Fukai, S., & Shimizu, T.
- Affiliations
- Nara Institute of Science and Technology (JP)
- The University of Tokyo (JP)
- Corresponding author
- Toma-Fukai, Sachiko
- Shimizu, Toshiyuki
- Venue
- Molecules
- Publisher
- MDPI AG
- Published
- 2019-09-11
- Volume
- 24
- Issue
- 18
- Pages
- 3308
- ISSN
- 1420-3049 (ISSN-L)
- PMC
- PMC6767298
- OpenAlex
- W2972437640
- Cited by
- 65
- References
- 2
- Citations by year
- 2026: 9 · 2025: 9 · 2024: 12 · 2023: 10 · 2022: 9 · 2021: 8 · 2020: 7 · 2017: 1
- FWCI
- 0.54
- Type
- journal article
- Language
- en
- Open access
- gold
- dx.doi.org
- Licence
- Locations
- Molecules (publishedVersion, cc-by)
- PubMed Central (publishedVersion, cc-by)
- PubMed (publishedVersion)
- DOAJ (DOAJ: Directory of Open Access Journals) (submittedVersion)
- Funders
- Naito Foundation
- Uehara Memorial Foundation
- Japan Society for the Promotion of Science (19H00976)
- Core Research for Evolutional Science and Technology
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Protein Kinase Regulation and GTPase Signaling
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Receptor Mechanisms and Signaling
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Cell Biology › Cellular transport and secretion
- Keywords
- small GTPases, guanine nucleotide exchange factor, GTPase-activating protein, GDP dissociation, GTP hydrolysis, GTPase activation, drug discovery
- MeSH terms
- Animals, Enzyme Activation, Humans, Phylogeny, Protein Folding, Monomeric GTP-Binding Proteins, Guanine Nucleotide Exchange Factors, Feedback, Physiological
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review