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Sorting nexin-27 regulates AMPA receptor trafficking through the synaptic adhesion protein LRFN2

McMillan, Kirsty J, Banks, Paul J, Hellel, Francesca LN, Carmichael, Ruth E, Clairfeuille, Thomas, Evans, Ashley J, Heesom, Kate J, Lewis, Philip, Collins, Brett M, Bashir, Zafar I, Henley, Jeremy M, Wilkinson, Kevin A, Cullen, Peter J·2021·eLife

Published version of a preprint

Abstract

The endosome-associated cargo adaptor sorting nexin-27 (SNX27) is linked to various neuropathologies through sorting of integral proteins to the synaptic surface, most notably AMPA receptors. To provide a broader view of SNX27-associated pathologies, we performed proteomics in rat primary neurons to identify SNX27-dependent cargoes, and identified proteins linked to excitotoxicity, epilepsy, intellectual disabilities, and working memory deficits. Focusing on the synaptic adhesion molecule LRFN2, we established that SNX27 binds to LRFN2 and regulates its endosomal sorting. Furthermore, LRFN2 associates with AMPA receptors and knockdown of LRFN2 results in decreased surface AMPA receptor expression, reduced synaptic activity, and attenuated hippocampal long-term potentiation. Overall, our study provides an additional mechanism by which SNX27 can control AMPA receptor-mediated synaptic transmission and plasticity indirectly through the sorting of LRFN2 and offers molecular insight into the perturbed function of SNX27 and LRFN2 in a range of neurological conditions.

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Crossref · 10.7554/elife.59432

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  • The addition of an N-terminal tag to SNX17 and SNX27 does not interfere with their ability to bind cargo or endosomal membranes.

    “Note that the addition of an N-terminal tag to these proteins does not interfere with their ability to bind cargo or endosomal membranes”

    From PI(3)P coordinates SNX17- and SNX27-dependent protein recycling for long-term synaptic plasticity (2025) · cites this paper as McMillan et al., 2021

    In Results (‘A neuronal SNX27 interactome’), the paper reports that GFP-SNX27 retained endosomal localisation. The Results figure caption (‘LRFNs interact with SNX27’) also reports an interaction between GFP-SNX27 and LRFN2. These findings support retained activity for tagged SNX27, but the paper does not establish the same for tagged SNX17. (LLM, conf=0.87)

    Experimental — accuracy not yet measured
  • The SNX27-Retromer pathway mediates the retrieval of over 200 transmembrane proteins in neurons, including neurotransmitter receptors, ion channels, and signaling receptors.

    “The better characterized SNX27-Retromer pathway mediates the retrieval of over 200 transmembrane proteins in neurons, including neurotransmitter receptors, ion channels, and signaling receptors”

    From Dual endomembrane recycling pathways function in parallel to support synapse maintenance and plasticity (2025) · cites this paper as McMillan et al., 2021

    The Introduction describes SNX27–retromer-dependent retrieval of internalised integral proteins, and the paper discusses neuronal receptors and ion channels. But the Results section on the neuronal SNX27 interactome identifies 212 SNX27-interacting proteins—not over 200 transmembrane proteins shown to be retrieved. It identifies seven integral proteins within the specified motif-bearing subset. (LLM, conf=0.89)

    Experimental — accuracy not yet measured
  • SNX27 Retromer-dependent AMPAR recycling is essential for synaptic potentiation and plasticity.

    “SNX27 Retromer-dependent AMPAR recycling is essential for synaptic potentiation and plasticity”

    From Dual endomembrane recycling pathways function in parallel to support synapse maintenance and plasticity (2025) · cites this paper as McMillan et al., 2021

    The Introduction says SNX27 is required to maintain AMPA-receptor-mediated currents during synaptic plasticity. The Results report that LRFN2 suppression attenuated hippocampal long-term potentiation, and the Discussion proposes a role for LRFN2 in SNX27-dependent AMPA receptor recycling. The paper does not establish that retromer-dependent recycling itself is essential for potentiation and plasticity; that wording goes beyond the reported experiments. (LLM, conf=0.84)

    Experimental — accuracy not yet measured
  • Through this dual interaction SNX27 regulates the retrieval and recycling of hundreds of cargoes to the plasma membrane.

    “Through this dual interaction SNX27 regulates the retrieval and recycling of hundreds of cargoes to the plasma membrane [26,29,31,58,59].”

    From Global identification of neuronal and astrocytic integral membrane proteins that require Retromer for their endosomal recycling (2026) · cites this paper as [59]

    The Introduction (page not provided) describes SNX27’s two interactions and says they enable retrieval of internalized proteins and recycling to the plasma membrane. It does not establish that hundreds of cargoes undergo this process. The Results report 212 SNX27-interacting proteins in cortical neurons, but do not identify all of them as recycling cargoes. (LLM, conf=0.87)

    Experimental — accuracy not yet measured
  • Neuronal SNX27 cargoes include AMPA-type glutamate receptors.

    “Neuronal SNX27 cargoes include key receptors, such as α-amino-3-hydroxy-5-methyl-4-isoxazolepropionic (AMPA)-type glutamate receptors”

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Research works printed but not linked: 74

  1. Anderson, 2001, The LTP program: a data acquisition program for on-line analysis of long-term potentiation and other synaptic events, Journal of Neuroscience Methods, 108, 71, 10.1016/S0165-0270(01)00374-0 · DOI
  2. Ashby, 2004, Removal of AMPA receptors (AMPARs) from synapses is preceded by transient endocytosis of extrasynaptic AMPARs, Journal of Neuroscience, 24, 5172, 10.1523/JNEUROSCI.1042-04.2004 · DOI · Paper page
  3. Bhattacharjee, 2003, Slick (Slo2.1), a rapidly-gating sodium-activated potassium channel inhibited by ATP, The Journal of Neuroscience, 23, 11681, 10.1523/JNEUROSCI.23-37-11681.2003 · DOI
  4. Binda, 2019, Sorting nexin 27 rescues neuroligin 2 from lysosomal degradation to control inhibitory synapse number, Biochemical Journal, 476, 293, 10.1042/BCJ20180504 · DOI · Paper page
  5. Blanco-Suarez, 2014, Distinct subunit-specific α-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid (AMPA) receptor trafficking mechanisms in cultured cortical and hippocampal neurons in response to oxygen and glucose deprivation, Journal of Biological Chemistry, 289, 4644, 10.1074/jbc.M113.533182 · DOI
  6. Borden, 1996, GABA transporter heterogeneity: pharmacology and cellular localization, Neurochemistry International, 29, 335, 10.1016/0197-0186(95)00158-1 · DOI
  7. Brouwer, 2019, SALM1 controls synapse development by promoting F-actin/PIP2-dependent neurexin clustering, The EMBO Journal, 38, 10.15252/embj.2018101289 · DOI
  8. Cai, 2011, Deficiency of sorting nexin 27 (SNX27) leads to growth retardation and elevated levels of N-methyl-D-aspartate receptor 2C (NR2C), Molecular and Cellular Biology, 31, 1734, 10.1128/MCB.01044-10 · DOI
  9. Carlton, 2004, Sorting nexin-1 mediates tubular endosome-to-TGN transport through coincidence sensing of high- curvature membranes and 3-phosphoinositides, Current Biology, 14, 1791, 10.1016/j.cub.2004.09.077 · DOI · Paper page
  10. Chan, 2016, Sorting nexin 27 couples PTHR trafficking to retromer for signal regulation in osteoblasts during bone growth, Molecular Biology of the Cell, 27, 1367, 10.1091/mbc.E15-12-0851 · DOI
  11. Clairfeuille, 2016, A molecular code for endosomal recycling of phosphorylated cargos by the SNX27-retromer complex, Nature Structural & Molecular Biology, 23, 921, 10.1038/nsmb.3290 · DOI · Paper page
  12. Coombs, 2009, Transmembrane AMPA receptor regulatory proteins and AMPA receptor function in the cerebellum, Neuroscience, 162, 656, 10.1016/j.neuroscience.2009.01.004 · DOI
  13. Cullen, 2008, Endosomal sorting and signalling: an emerging role for sorting nexins, Nature Reviews Molecular Cell Biology, 9, 574, 10.1038/nrm2427 · DOI · Paper page
  14. Cullen, 2018, To degrade or not to degrade: mechanisms and significance of endocytic recycling, Nature Reviews Molecular Cell Biology, 19, 679, 10.1038/s41580-018-0053-7 · DOI · Paper page
  15. Damseh, 2015, A defect in the retromer accessory protein, SNX27, manifests by infantile myoclonic epilepsy and neurodegeneration, Neurogenetics, 16, 215, 10.1007/s10048-015-0446-0 · DOI · Paper page
  16. DDD Study, 2016, Heterozygous KIDINS220/ARMS nonsense variants cause spastic paraplegia, intellectual disability, nystagmus, and obesity, Human Molecular Genetics, 25, 2158, 10.1093/hmg/ddw082 · DOI
  17. Derivery, 2009, The Arp2/3 activator WASH controls the fission of endosomes through a large multiprotein complex, Developmental Cell, 17, 712, 10.1016/j.devcel.2009.09.010 · DOI · Paper page
  18. Fukata, 2006, Epilepsy-Related ligand/Receptor complex LGI1 and ADAM22 regulate synaptic transmission, Science, 313, 1792, 10.1126/science.1129947 · DOI
  19. Gallon, 2014, A unique PDZ domain and arrestin-like fold interaction reveals mechanistic details of endocytic recycling by SNX27-retromer, PNAS, 111, E3604, 10.1073/pnas.1410552111 · DOI · Paper page
  20. Gomez, 2009, A FAM21-containing WASH complex regulates retromer-dependent sorting, Developmental Cell, 17, 699, 10.1016/j.devcel.2009.09.009 · DOI · Paper page
  21. Grooms, 2000, Status epilepticus decreases glutamate receptor 2 mRNA and protein expression in hippocampal pyramidal cells before neuronal death, PNAS, 97, 3631, 10.1073/pnas.97.7.3631 · DOI
  22. Gururaj, 2017, A de novo mutation in the Sodium-Activated potassium channel KCNT2 alters ion selectivity and causes epileptic encephalopathy, Cell Reports, 21, 926, 10.1016/j.celrep.2017.09.088 · DOI
  23. Halff, 2019, SNX27-Mediated recycling of Neuroligin-2 regulates inhibitory signaling, Cell Reports, 29, 2599, 10.1016/j.celrep.2019.10.096 · DOI · Paper page
  24. Harterink, 2011, A SNX3-dependent retromer pathway mediates retrograde transport of the wnt sorting receptor wntless and is required for wnt secretion, Nature Cell Biology, 13, 914, 10.1038/ncb2281 · DOI · Paper page
  25. Henley, 2016, Synaptic AMPA receptor composition in development, plasticity and disease, Nature Reviews Neuroscience, 17, 337, 10.1038/nrn.2016.37 · DOI
  26. Hollmann, 1994, Cloned glutamate receptors, Annual Review of Neuroscience, 17, 31, 10.1146/annurev.ne.17.030194.000335 · DOI
  27. Huganir, 2013, AMPARs and synaptic plasticity: the last 25 years, Neuron, 80, 704, 10.1016/j.neuron.2013.10.025 · DOI · Paper page
  28. Hussain, 2014, Sorting nexin 27 regulates basal and activity-dependent trafficking of AMPARs, PNAS, 111, 11840, 10.1073/pnas.1412415111 · DOI · Paper page
  29. Iglesias, 2000, Identification and cloning of Kidins220, a novel neuronal substrate of protein kinase D, Journal of Biological Chemistry, 275, 40048, 10.1074/jbc.M005261200 · DOI
  30. Jen, 2005, Mutation in the glutamate transporter EAAT1 causes episodic ataxia, Hemiplegia, and seizures, Neurology, 65, 529, 10.1212/01.WNL.0000172638.58172.5a · DOI
  31. Joubert, 2004, New sorting nexin (SNX27) and NHERF specifically interact with the 5-HT4a receptor splice variant: roles in receptor targeting, Journal of Cell Science, 117, 5367, 10.1242/jcs.01379 · DOI
  32. Ko, 2006, SALM synaptic cell adhesion-like molecules regulate the differentiation of excitatory synapses, Neuron, 50, 233, 10.1016/j.neuron.2006.04.005 · DOI
  33. Kong, 2001, An evolutionarily conserved transmembrane protein that is a novel downstream target of neurotrophin and ephrin receptors, The Journal of Neuroscience, 21, 176, 10.1523/JNEUROSCI.21-01-00176.2001 · DOI
  34. Kurten, 1996, Enhanced degradation of EGF receptors by a sorting nexin, SNX1, Science, 272, 1008, 10.1126/science.272.5264.1008 · DOI · Paper page
  35. Lauffer, 2010, SNX27 mediates PDZ-directed sorting from endosomes to the plasma membrane, Journal of Cell Biology, 190, 565, 10.1083/jcb.201004060 · DOI · Paper page
  36. Leuschner, 1999, Subtype-specific assembly of alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionic acid receptor subunits is mediated by their n-terminal domains, Journal of Biological Chemistry, 274, 16907, 10.1074/jbc.274.24.16907 · DOI
  37. Li, 2018, Lrfn2-Mutant mice display suppressed synaptic plasticity and inhibitory synapse development and abnormal social communication and startle response, The Journal of Neuroscience, 38, 5872, 10.1523/JNEUROSCI.3321-17.2018 · DOI
  38. Lie, 2018, SALM/Lrfn family synaptic adhesion molecules, Frontiers in Molecular Neuroscience, 11, 10.3389/fnmol.2018.00105 · DOI
  39. Lin, 2015, VPS26A-SNX27 Interaction-Dependent mGluR5 recycling in dorsal horn neurons mediates neuropathic pain in rats, Journal of Neuroscience, 35, 14943, 10.1523/JNEUROSCI.2587-15.2015 · DOI
  40. Lin, 2018, Structural basis of SALM5-induced ptpδ dimerization for synaptic differentiation, Nature Communications, 9, 10.1038/s41467-017-02414-2 · DOI
  41. Loo, 2014, A role for sorting nexin 27 in AMPA receptor trafficking, Nature Communications, 5, 10.1038/ncomms4176 · DOI · Paper page
  42. Lunn, 2007, A unique sorting nexin regulates trafficking of potassium channels via a PDZ domain interaction, Nature Neuroscience, 10, 1249, 10.1038/nn1953 · DOI · Paper page
  43. Mah, 2010, Selected SALM (synaptic adhesion-like molecule) family proteins regulate synapse formation, Journal of Neuroscience, 30, 5559, 10.1523/JNEUROSCI.4839-09.2010 · DOI
  44. Martin, 2004, Activity-dependent endocytic sorting of kainate receptors to recycling or degradation pathways, The EMBO Journal, 23, 4749, 10.1038/sj.emboj.7600483 · DOI
  45. McMillan, 2016, Atypical parkinsonism-associated retromer mutant alters endosomal sorting of specific cargo proteins, Journal of Cell Biology, 214, 389, 10.1083/jcb.201604057 · DOI
  46. Morimura, 2006, Comparative analysis of structure, expression and PSD95-binding capacity of lrfn, a novel family of neuronal transmembrane proteins, Gene, 380, 72, 10.1016/j.gene.2006.05.014 · DOI
  47. Morimura, 2017, Autism-like behaviours and enhanced memory formation and synaptic plasticity in Lrfn2/SALM1-deficient mice, Nature Communications, 8, 10.1038/ncomms15800 · DOI
  48. Muona, 2016, Dysfunctional ADAM22 implicated in progressive encephalopathy with cortical atrophy and epilepsy, Neurology Genetics, 2, 10.1212/NXG.0000000000000046 · DOI
  49. Nam, 2011, The SALM/Lrfn family of leucine-rich repeat-containing cell adhesion molecules, Seminars in Cell & Developmental Biology, 22, 492, 10.1016/j.semcdb.2011.06.005 · DOI
  50. Parente, 2020, Sorting nexin 27 (SNX27) variants associated with seizures, developmental delay, behavioral disturbance, and subcortical brain abnormalities, Clinical Genetics, 97, 437, 10.1111/cge.13675 · DOI · Paper page
  51. Park, 2019, Deletion of the na/HCO3transporter NBCn1 protects hippocampal neurons from NMDA-induced seizures and neurotoxicity in mice, Scientific Reports, 9, 10.1038/s41598-019-52413-0 · DOI
  52. Phillips-Krawczak, 2015, COMMD1 is linked to the WASH complex and regulates endosomal trafficking of the copper transporter ATP7A, Molecular Biology of the Cell, 26, 91, 10.1091/mbc.e14-06-1073 · DOI · Paper page
  53. Rautiainen, 2016, Genome-wide association study of antisocial personality disorder, Translational Psychiatry, 6, 10.1038/tp.2016.155 · DOI
  54. Rothstein, 1996, Knockout of glutamate transporters reveals a major role for astroglial transport in Excitotoxicity and clearance of glutamate, Neuron, 16, 675, 10.1016/S0896-6273(00)80086-0 · DOI · Paper page
  55. Schwenk, 2009, Functional proteomics identify cornichon proteins as auxiliary subunits of AMPA receptors, Science, 323, 1313, 10.1126/science.1167852 · DOI
  56. Seabold, 2008, The SALM family of Adhesion-like molecules forms heteromeric and homomeric complexes, Journal of Biological Chemistry, 283, 8395, 10.1074/jbc.M709456200 · DOI
  57. Seabold, 2012, Dileucine and PDZ-binding motifs mediate synaptic adhesion-like molecule 1 (SALM1) trafficking in hippocampal neurons, Journal of Biological Chemistry, 287, 4470, 10.1074/jbc.M111.279661 · DOI
  58. Seaman, 1998, A membrane coat complex essential for endosome-to-Golgi retrograde transport in yeast, Journal of Cell Biology, 142, 665, 10.1083/jcb.142.3.665 · DOI · Paper page
  59. Shankar, 2008, Amyloid-beta protein dimers isolated directly from Alzheimer's brains impair synaptic plasticity and memory, Nature Medicine, 14, 837, 10.1038/nm1782 · DOI · Paper page
  60. Shepherd, 2007, The cell biology of synaptic plasticity: ampa receptor trafficking, Annual Review of Cell and Developmental Biology, 23, 613, 10.1146/annurev.cellbio.23.090506.123516 · DOI · Paper page
  61. Simonetti, 2019, Molecular identification of a BAR domain-containing coat complex for endosomal recycling of transmembrane proteins, Nature Cell Biology, 21, 1219, 10.1038/s41556-019-0393-3 · DOI · Paper page
  62. Stangl, 2019, Regulation of the endosomal SNX27-retromer by OTULIN, Nature Communications, 10, 10.1038/s41467-019-12309-z · DOI
  63. Steinberg, 2013, A global analysis of SNX27-retromer assembly and cargo specificity reveals a function in glucose and metal ion transport, Nature Cell Biology, 15, 461, 10.1038/ncb2721 · DOI · Paper page
  64. Storck, 1992, Structure, expression, and functional analysis of a na(+)-dependent glutamate/aspartate transporter from rat brain, PNAS, 89, 10955, 10.1073/pnas.89.22.10955 · DOI
  65. Strochlic, 2007, Grd19/Snx3p functions as a cargo-specific adapter for retromer-dependent endocytic recycling, Journal of Cell Biology, 177, 115, 10.1083/jcb.200609161 · DOI · Paper page
  66. Temkin, 2011, SNX27 mediates retromer tubule entry and endosome-to-plasma membrane trafficking of signalling receptors, Nature Cell Biology, 13, 715, 10.1038/ncb2252 · DOI · Paper page
  67. Thevenon, 2016, Heterozygous deletion of the LRFN2 gene is associated with working memory deficits, European Journal of Human Genetics, 24, 911, 10.1038/ejhg.2015.221 · DOI
  68. Thornell, 2015, Regulators of Slc4 bicarbonate transporter activity, Frontiers in Physiology, 6, 10.3389/fphys.2015.00166 · DOI
  69. Walsh, 2002, Naturally secreted oligomers of amyloid beta protein potently inhibit hippocampal long-term potentiation in vivo, Nature, 416, 535, 10.1038/416535a · DOI · Paper page
  70. Wang, 2006, A novel family of adhesion-like molecules that interacts with the NMDA receptor, Journal of Neuroscience, 26, 2174, 10.1523/JNEUROSCI.3799-05.2006 · DOI
  71. Wang, 2013, Loss of sorting nexin 27 contributes to excitatory synaptic dysfunction by modulating glutamate receptor recycling in down's syndrome, Nature Medicine, 19, 473, 10.1038/nm.3117 · DOI · Paper page
  72. Watase, 1998, Motor discoordination and increased susceptibility to cerebellar injury in GLAST mutant mice, European Journal of Neuroscience, 10, 976, 10.1046/j.1460-9568.1998.00108.x · DOI
  73. Wenthold, 1996, Evidence for multiple AMPA receptor complexes in hippocampal CA1/CA2 neurons, The Journal of Neuroscience, 16, 1982, 10.1523/JNEUROSCI.16-06-01982.1996 · DOI · Paper page
  74. Yamashita, 2014, The molecular link between inefficient GluA2 Q/R site-RNA editing and TDP-43 pathology in motor neurons of sporadic amyotrophic lateral sclerosis patients, Brain Research, 1584, 28, 10.1016/j.brainres.2013.12.011 · DOI

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Metadata

Authors
McMillan, K. J., Banks, P. J., Hellel, F. L., Carmichael, R. E., Clairfeuille, T., Evans, A. J., Heesom, K. J., Lewis, P., Collins, B. M., Bashir, Z. I., Henley, J. M., Wilkinson, K. A., & Cullen, P. J.
Affiliations
  • School of Biochemistry, University of Bristol, Bristol, United Kingdom
  • School of Physiology, Pharmacology and Neuroscience, University of Bristol, Bristol, United Kingdom
  • Institute for Molecular Bioscience, The University of Queensland, Queensland, Australia
  • Proteomics facility, School of Biochemistry, University of Bristol, Bristol, United Kingdom
Venue
eLife
Published
2021-07-12
Volume
10
ISSN
2050-084X
Cited by
21
References
7
Language
en
Funders
  • Medical Research Council (MR/L007363/1, MR/P018807/1)
  • Wellcome Trust (104568/Z/14/2, 220260/Z/20/Z)
  • Lister Institute of Preventive Medicine
  • National Health and Medical Research Council (APP1136021, APP1099114)
  • Biotechnology and Biological Sciences Research Council (BB/R00787X/1)
  • Royal Society (RSRP\R1\211004)

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