The DOI matches its Crossref record; 6 of the 6 references it cites were found in a registry or an index.
Evaluation of the maximum likelihood estimate of the evolutionary tree topologies from DNA sequence data, and the branching order in hominoidea
Overview
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Verification
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
Citations
Cites
A new look at the statistical model identification
Akaike, H. (1974) · IEEE Transactions on Automatic Control · doi:10.1109/tac.1974.1100705 · Cited by 51,879
Kimura, M. (1980) · Journal of Molecular Evolution · doi:10.1007/bf01731581 · Cited by 29,778
Evolutionary trees from DNA sequences: A maximum likelihood approach.
Felsenstein, J. (1981) · Journal of Molecular Evolution · doi:10.1007/bf01734359 · Cited by 14,571
Dating of the human–ape splitting by a molecular clock of mitochondrial DNA.
Hasegawa, M., Kishino, H., & Yano, T.-A. (1985) · Journal of Molecular Evolution · doi:10.1007/bf02101694 · Cited by 8,687
Self-citationThe molecular clock runs more slowly in man than in apes and monkeys
Li, W.-H., & Tanimura, M. (1987) · Nature · doi:10.1038/326093a0 · Cited by 375
(1986) · Molecular Biology and Evolution · doi:10.1093/oxfordjournals.molbev.a040379 · Cited by 210
Cited by
Guindon, S., Dufayard, J.-F., Lefort, V., Anisimova, M., Hordijk, W., & Gascuel, O. (2010) · Systematic Biology · doi:10.1093/sysbio/syq010 · Cited by 18,376
PAML 4: Phylogenetic Analysis by Maximum Likelihood
Yang, Z. (2007) · Molecular Biology and Evolution · doi:10.1093/molbev/msm088 · Cited by 13,879
Multiple Comparisons of Log-Likelihoods with Applications to Phylogenetic Inference
Shimodaira, H., & Hasegawa, M. (1999) · Molecular Biology and Evolution · doi:10.1093/oxfordjournals.molbev.a026201 · Cited by 4,237
Self-citationPosada, D., & Buckley, T. R. (2004) · Systematic Biology · doi:10.1080/10635150490522304 · Cited by 3,927
An approximately unbiased test of phylogenetic tree selection
Shimodaira, H. (2002) · Systematic Biology · doi:10.1080/10635150290069913 · Cited by 2,791
Bayesian phylogenetic inference using DNA sequences: a Markov Chain Monte Carlo Method
Yang, Z., & Rannala, B. (1997) · Molecular Biology and Evolution · doi:10.1093/oxfordjournals.molbev.a025811 · Cited by 1,274
Molecular systematics and phylogeography of the Gibberella fujikuroi species complex
O'Donnell, K., Cigelnik, E., & Nirenberg, H. I. (1998) · Mycologia · doi:10.1080/00275514.1998.12026933 · Cited by 963
Statistical tests of models of DNA substitution
Goldman, N. (1993) · Journal of Molecular Evolution · doi:10.1007/bf00166252 · Cited by 736
Nitrogen fixation and photosynthetic oxygen evolution in cyanobacteria
Berman-Frank, I., Lundgren, P., & Falkowski, P. (2003) · Research in Microbiology · doi:10.1016/s0923-2508(03)00029-9 · Cited by 522
Estimation of primate speciation dates using local molecular clocks.
Yoder, A. D., & Yang, Z. (2000) · Molecular Biology and Evolution · doi:10.1093/oxfordjournals.molbev.a026389 · Cited by 494
Millen, R. S., Olmstead, R. G., Adams, K. L., Palmer, J. D., Lao, N. T., Heggie, L., Kavanagh, T. A., Hibberd, J. M., Gray, J. C., Morden, C. W., et al. (2001) · The Plant Cell · doi:10.1105/tpc.13.3.645 · Cited by 503
Fast, N. M., Kissinger, J. C., Roos, D. S., & Keeling, P. J. (2001) · Molecular Biology and Evolution · doi:10.1093/oxfordjournals.molbev.a003818 · Cited by 418
Medina, M., Collins, A. G., Silberman, J. D., & Sogin, M. L. (2001) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.171316998 · Cited by 395
PHYLOGENETIC ANALYSIS IN MOLECULAR EVOLUTIONARY GENETICS
Nei, M. (1996) · Annual Review of Genetics · doi:10.1146/annurev.genet.30.1.371 · Cited by 349
Evolutionary Origins of Genomic Repertoires in Bacteria
Lerat, E., Daubin, V., Ochman, H., & Moran, N. A. (2005) · PLoS Biology · doi:10.1371/journal.pbio.0030130 · Cited by 338
Model misspecification and probabilistic tests of topology: evidence from empirical data sets.
Buckley, T. R. (2002) · Systematic Biology · doi:10.1080/10635150290069922 · Cited by 253
Mitochondrial genome of Trichoplax adhaerens supports Placozoa as the basal lower metazoan phylum
Dellaporta, S. L., Xu, A., Sagasser, S., Jakob, W., Moreno, M. A., Buss, L. W., & Schierwater, B. (2006) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0602076103 · Cited by 252
Evolution of the fungal self-fertile reproductive life style from self-sterile ancestors
Yun, S.-H., Berbee, M. L., Yoder, O. C., & Turgeon, B. G. (1999) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.96.10.5592 · Cited by 248
Maximum Likelihood Estimation of Recombination Rates From Population Data
Kuhner, M. K., Yamato, J., & Felsenstein, J. (2000) · Genetics · doi:10.1093/genetics/156.3.1393 · Cited by 208
Jeewon, R. (2002) · Molecular Phylogenetics and Evolution · doi:10.1016/s1055-7903(02)00422-0 · Cited by 209
Nakatani, M., Miya, M., Mabuchi, K., Saitoh, K., & Nishida, M. (2011) · BMC Evolutionary Biology · doi:10.1186/1471-2148-11-177 · Cited by 201
A Molecular Phylogenetic Framework for the Phylum Ctenophora Using 18S rRNA Genes
Podar, M., Haddock, S. H. D., Sogin, M. L., & Harbison, G. R. (2001) · Molecular Phylogenetics and Evolution · doi:10.1006/mpev.2001.1036 · Cited by 175
Oberste, M. S., Maher, K., Kennett, M. L., Campbell, J. J., Carpenter, M. S., Schnurr, D., & Pallansch, M. A. (1999) · Journal of Clinical Microbiology · doi:10.1128/jcm.37.12.3928-3933.1999 · Cited by 154
Van Iten, H., de Moraes Leme, J., Simões, M. G., Marques, A. C., & Collins, A. G. (2006) · Journal of Systematic Palaeontology · doi:10.1017/s1477201905001793 · Cited by 138
The molecular population genetics of HIV-1 group O.
Lemey, P., Pybus, O. G., Rambaut, A., Drummond, A. J., Robertson, D. L., Roques, P., Worobey, M., & Vandamme, A.-M. (2004) · Genetics · doi:10.1534/genetics.104.026666 · Cited by 131
The ApMat marker can resolve Colletotrichum species: a case study with Mangifera indica
Sharma, G., Kumar, N., Weir, B. S., Hyde, K. D., & Shenoy, B. D. (2013) · Fungal Diversity · doi:10.1007/s13225-013-0247-4 · Cited by 131
Molecular phylogeny and evolution of prosimians based on complete sequences of mitochondrial DNAs.
Matsui, A., Rakotondraparany, F., Munechika, I., Hasegawa, M., & Horai, S. (2009) · Gene · doi:10.1016/j.gene.2008.08.024 · Cited by 121
“We performed tests of alternative trees in an ML framework with CONSEL program (Shimodaira and Hasegawa, 2001) using the nonparametric KH test (Kishino and Hasegawa, 1989), with correction for multiple comparisons of topologies defined a posteriori (SH test) (Shimodaira and Hasegawa, 1999).”
MethodHow many genes in Arabidopsis come from cyanobacteria? An estimate from 386 protein phylogenies
Rujan, T., & Martin, W. (2001) · Trends in Genetics · doi:10.1016/s0168-9525(00)02209-5 · Cited by 117
Natural genetic recombination between co-circulating heterotypic enteroviruses
Oprisan, G., Combiescu, M., Guillot, S., Caro, V., Combiescu, A., Delpeyroux, F., & Crainic, R. (2002) · Journal of General Virology · doi:10.1099/0022-1317-83-9-2193 · Cited by 105
Poux, C., & Douzery, E. J. P. (2004) · American Journal of Physical Anthropology · doi:10.1002/ajpa.10322 · Cited by 103
Reemergence of recombinant vaccine–derived poliovirus outbreak in Madagascar.
Rakoto‐Andrianarivelo, M., Gumede, N., Jegouic, S., Balanant, J., Andriamamonjy, S. N., Rabemanantsoa, S., Birmingham, M., Randriamanalina, B., Nkolomoni, L., Venter, M., et al. (2008) · The Journal of Infectious Diseases · doi:10.1086/587694 · Cited by 100
Diverse species of Colletotrichum associated with grapevine anthracnose in China
Yan, J.-Y., Jayawardena, M. M. R. S., Goonasekara, I. D., Wang, Y., Zhang, W., Liu, M., Huang, J.-B., Wang, Z.-Y., Shang, J.-J., Peng, Y.-L., et al. (2015) · Fungal Diversity · doi:10.1007/s13225-014-0310-9 · Cited by 100
Adachi, J., & Hasegawa, M. (1995) · Journal of Molecular Evolution · doi:10.1007/bf00160510 · Cited by 94
Self-citationHassanin, A., & Douzery, E. J. P. (1999) · Proceedings of the Royal Society of London. Series B: Biological Sciences · doi:10.1098/rspb.1999.0720 · Cited by 90
Molecular phylogeny of the benthic shallow-water octopuses (Cephalopoda: Octopodinae)
Guzik, M. T., Norman, M. D., & Crozier, R. H. (2005) · Molecular Phylogenetics and Evolution · doi:10.1016/j.ympev.2005.05.009 · Cited by 86
Hasegawa, M., Kishino, H., & Yano, T.-A. (1989) · Journal of Human Evolution · doi:10.1016/0047-2484(89)90075-4 · Cited by 81
Self-citationElongation Factor 1-Alpha Sequences Do Not Support an Early Divergence of the Acoela
Berney, C., Pawlowski, J., & Zaninetti, L. (2000) · Molecular Biology and Evolution · doi:10.1093/oxfordjournals.molbev.a026384 · Cited by 58
Automation and evaluation of the SOWH Test with SOWHAT
Church, S. H., Ryan, J. F., & Dunn, C. W. (2015) · Systematic Biology · doi:10.1093/sysbio/syv055 · Cited by 50
Orti, G., & Meyer, A. (1996) · Molecular Biology and Evolution · doi:10.1093/oxfordjournals.molbev.a025616 · Cited by 44
Species diversity of Pseudocercospora from Far East Asia
Nakashima, C., Motohashi, K., Chen, C.-Y., Groenewald, J. Z., & Crous, P. W. (2016) · Mycological Progress · doi:10.1007/s11557-016-1231-7 · Cited by 38
Identification of a covert evolutionary pathway between two protein folds
Chakravarty, D., Sreenivasan, S., Swint-Kruse, L., & Porter, L. L. (2023) · Nature Communications · doi:10.1038/s41467-023-38519-0 · Cited by 29
Lausen, C. L., Proctor, M., Nagorsen, D. W., Burles, D., Paetkau, D., Harmston, E., Blejwas, K., Govindarajulu, P., & Friis, L. (2019) · Canadian Journal of Zoology · doi:10.1139/cjz-2018-0113 · Cited by 15
Gosselin, S., Arsenault, D., Jennings, C., & Gogarten, J. (2023) · Genes · doi:10.3390/genes14020288 · Cited by 3
Identification of a covert evolutionary pathway between two protein folds
Chakravarty, D., Sreenivasan, S., Swint-Kruse, L., & Porter, L. L. (2022) · doi:10.1101/2022.12.08.519646 · Cited by 2
Metadata
- Authors
- Kishino, H., & Hasegawa, M.
- Venue
- Journal of Molecular Evolution
- Published
- 1989-08
- Volume
- 29
- Issue
- 2
- Pages
- 170-179
- ISSN
- 0022-2844 (ISSN-L)
- 1432-1432
- OpenAlex
- W2037667459
- Cited by
- 3,373
- References
- 6
- FWCI
- 5.70
- Type
- journal article
- Language
- en
- Open access
- closed
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review
Data sources
Bibliographic data: Semantic Scholar, OpenAlex, Crossref.
Contains information from the Semantic Scholar Academic Graph Datasets, made available under the ODC Attribution License (ODC-BY 1.0).
Semantic Scholar’s data is described in: Kinney, R., et al. (2023). The Semantic Scholar Open Data Platform. arXiv:2301.10140.