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Co-transcriptional DNA and RNA Cleavage during Type III CRISPR-Cas Immunity
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This binding enables Cas10-mediated cleavage of the complementary DNA duplex and Cas7-guided cleavage of the ssRNA molecule in intervals of 6 nucleotides.
“This binding enables Cas10-mediated cleavage of the complementary DNA duplex and Cas7-guided cleavage of the ssRNA molecule in intervals of 6 nucleotides [47,50].”
From CRISPR-Cas: Converting A Bacterial Defence Mechanism into A State-of-the-Art Genetic Manipulation Tool (2019) · cites this paper as [50]
The Results sections report that Cas10 is essential for DNA cleavage and that the Cas10-Csm complex cleaves complementary ssRNA at six-nucleotide intervals, with Csm3 implicated in RNA cleavage (pages not provided). The DNA result is narrower than cleavage of the duplex: the paper reports cleavage of the non-template strand while the template strand was neither cleaved nor degraded. It identifies Csm3, not Cas7, as the RNA-cleavage subunit. (LLM, conf=0.89)
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Cites
A Programmable Dual-RNA–Guided DNA Endonuclease in Adaptive Bacterial Immunity
Jinek, M., Chylinski, K., Fonfara, I., Hauer, M., Doudna, J. A., & Charpentier, E. (2012) · Science · doi:10.1126/science.1225829 · Cited by 17,116
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Research works printed but not linked: 40
- Anantharaman, 2010, Presence of a classical RRM-fold palm domain in Thg1-type 3′- 5’nucleic acid polymerases and the origin of the GGDEF and CRISPR polymerase domains, Biol. Direct, 5, 43, 10.1186/1745-6150-5-43 · DOI
- Artsimovitch, 2003, A new class of bacterial RNA polymerase inhibitor affects nucleotide addition, Science, 302, 650, 10.1126/science.1087526 · DOI
- Barrangou, 2014, CRISPR-Cas systems: Prokaryotes upgrade to adaptive immunity, Mol. Cell, 54, 234, 10.1016/j.molcel.2014.03.011 · DOI · Paper page
- Barrangou, 2007, CRISPR provides acquired resistance against viruses in prokaryotes, Science, 315, 1709, 10.1126/science.1138140 · DOI · Paper page
- Bolotin, 2005, Clustered regularly interspaced short palindrome repeats (CRISPRs) have spacers of extrachromosomal origin, Microbiology, 151, 2551, 10.1099/mic.0.28048-0 · DOI · Paper page
- Brouns, 2008, Small CRISPR RNAs guide antiviral defense in prokaryotes, Science, 321, 960, 10.1126/science.1159689 · DOI · Paper page
- Carte, 2008, Cas6 is an endoribonuclease that generates guide RNAs for invader defense in prokaryotes, Genes Dev., 22, 3489, 10.1101/gad.1742908 · DOI
- Deng, 2013, A novel interference mechanism by a type IIIB CRISPR-Cmr module in Sulfolobus, Mol. Microbiol., 87, 1088, 10.1111/mmi.12152 · DOI
- Deveau, 2008, Phage response to CRISPR-encoded resistance in Streptococcus thermophilus, J. Bacteriol., 190, 1390, 10.1128/JB.01412-07 · DOI
- Edgar, 2010, The Escherichia coli CRISPR system protects from λ lysogenization, lysogens, and prophage induction, J. Bacteriol., 192, 6291, 10.1128/JB.00644-10 · DOI
- Garneau, 2010, The CRISPR/Cas bacterial immune system cleaves bacteriophage and plasmid DNA, Nature, 468, 67, 10.1038/nature09523 · DOI
- Gibson, 2009, Enzymatic assembly of DNA molecules up to several hundred kilobases, Nat. Methods, 6, 343, 10.1038/nmeth.1318 · DOI
- Goldberg, 2014, Conditional tolerance of temperate phages via transcription-dependent CRISPR-Cas targeting, Nature, 514, 633, 10.1038/nature13637 · DOI
- Hale, 2009, RNA-guided RNA cleavage by a CRISPR RNA-Cas protein complex, Cell, 139, 945, 10.1016/j.cell.2009.07.040 · DOI · Paper page
- Hatoum-Aslan, 2011, Mature clustered, regularly interspaced, short palindromic repeats RNA (crRNA) length is measured by a ruler mechanism anchored at the precursor processing site, Proc. Natl. Acad. Sci. USA, 108, 21218, 10.1073/pnas.1112832108 · DOI · Paper page
- Hatoum-Aslan, 2013, A ruler protein in a complex for antiviral defense determines the length of small interfering CRISPR RNAs, J. Biol. Chem., 288, 27888, 10.1074/jbc.M113.499244 · DOI
- Hatoum-Aslan, 2014, Genetic characterization of antiplasmid immunity through a type III-A CRISPR-Cas system, J. Bacteriol., 196, 310, 10.1128/JB.01130-13 · DOI
- Heitman, 1999, DNA nicks inflicted by restriction endonucleases are repaired by a RecA- and RecB-dependent pathway in Escherichia coli, Mol. Microbiol., 33, 1141, 10.1046/j.1365-2958.1999.01556.x · DOI
- Horinouchi, 1982, Nucleotide sequence and functional map of pC194, a plasmid that specifies inducible chloramphenicol resistance, J. Bacteriol., 150, 815, 10.1128/JB.150.2.815-825.1982 · DOI
- Horinouchi, 1982, Nucleotide sequence and functional map of pE194, a plasmid that specifies inducible resistance to macrolide, lincosamide, and streptogramin type B antibodies, J. Bacteriol., 150, 804, 10.1128/JB.150.2.804-814.1982 · DOI
- Kreiswirth, 1983, The toxic shock syndrome exotoxin structural gene is not detectably transmitted by a prophage, Nature, 305, 709, 10.1038/305709a0 · DOI
- Lovett, 1989, Identification and purification of a single-stranded-DNA-specific exonuclease encoded by the recJ gene of Escherichia coli, Proc. Natl. Acad. Sci. USA, 86, 2627, 10.1073/pnas.86.8.2627 · DOI
- Makarova, 2011, Unification of Cas protein families and a simple scenario for the origin and evolution of CRISPR-Cas systems, Biol. Direct, 6, 38, 10.1186/1745-6150-6-38 · DOI
- Makarova, 2011, Evolution and classification of the CRISPR-Cas systems, Nat. Rev. Microbiol., 9, 467, 10.1038/nrmicro2577 · DOI · Paper page
- Marraffini, 2008, CRISPR interference limits horizontal gene transfer in staphylococci by targeting DNA, Science, 322, 1843, 10.1126/science.1165771 · DOI · Paper page
- Marraffini, 2010, Self versus non-self discrimination during CRISPR RNA-directed immunity, Nature, 463, 568, 10.1038/nature08703 · DOI
- Mojica, 2005, Intervening sequences of regularly spaced prokaryotic repeats derive from foreign genetic elements, J. Mol. Evol., 60, 174, 10.1007/s00239-004-0046-3 · DOI · Paper page
- Mojica, 2009, Short motif sequences determine the targets of the prokaryotic CRISPR defence system, Microbiology, 155, 733, 10.1099/mic.0.023960-0 · DOI · Paper page
- Moore, 2008, Population snapshot of emergent Streptococcus pneumoniae serotype 19A in the United States, 2005, J. Infect. Dis., 197, 1016, 10.1086/528996 · DOI
- Peng, 2015, An archaeal CRISPR type III-B system exhibiting distinctive RNA targeting features and mediating dual RNA and DNA interference, Nucleic Acids Res., 43, 406, 10.1093/nar/gku1302 · DOI
- Pourcel, 2005, CRISPR elements in Yersinia pestis acquire new repeats by preferential uptake of bacteriophage DNA, and provide additional tools for evolutionary studies, Microbiology, 151, 653, 10.1099/mic.0.27437-0 · DOI · Paper page
- Ramia, 2014, Staphylococcus epidermidis Csm1 is a 3′-5′ exonuclease, Nucleic Acids Res., 42, 1129, 10.1093/nar/gkt914 · DOI
- Roman, 1992, Processivity of the DNA helicase activity of Escherichia coli recBCD enzyme, J. Biol. Chem., 267, 4207, 10.1016/S0021-9258(19)50649-4 · DOI
- Semenova, 2011, Interference by clustered regularly interspaced short palindromic repeat (CRISPR) RNA is governed by a seed sequence, Proc. Natl. Acad. Sci. USA, 108, 10098, 10.1073/pnas.1104144108 · DOI · Paper page
- Sidorenkov, 1998, Crucial role of the RNA:DNA hybrid in the processivity of transcription, Mol. Cell, 2, 55, 10.1016/S1097-2765(00)80113-6 · DOI
- Staals, 2014, RNA targeting by the type III-A CRISPR-Cas Csm complex of Thermus thermophilus, Mol. Cell, 56, 518, 10.1016/j.molcel.2014.10.005 · DOI
- Tamulaitis, 2014, Programmable RNA shredding by the type III-A CRISPR-Cas system of Streptococcus thermophilus, Mol. Cell, 56, 506, 10.1016/j.molcel.2014.09.027 · DOI
- van der Oost, 2014, Unravelling the structural and mechanistic basis of CRISPR-Cas systems, Nat. Rev. Microbiol., 12, 479, 10.1038/nrmicro3279 · DOI
- Westra, 2012, CRISPR immunity relies on the consecutive binding and degradation of negatively supercoiled invader DNA by Cascade and Cas3, Mol. Cell, 46, 595, 10.1016/j.molcel.2012.03.018 · DOI
- Zhang, 2012, Structure and mechanism of the CMR complex for CRISPR-mediated antiviral immunity, Mol. Cell, 45, 303, 10.1016/j.molcel.2011.12.013 · DOI
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Metadata
- Authors
- Samai, P., Pyenson, N., Jiang, W., Goldberg, G. W., Hatoum-Aslan, A., & Marraffini, L. A.
- Venue
- Cell
- Publisher
- Elsevier BV
- Published
- 2015-05
- Volume
- 161
- Issue
- 5
- Pages
- 1164-1174
- ISSN
- 0092-8674
- PMC
- PMC4594840
- Cited by
- 426
- References
- 1
- Language
- en
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