The DOI matches its Crossref record; 17 of the 17 references it cites were found in a registry or an index.
CRISPR-Cas Systems: Prokaryotes Upgrade to Adaptive Immunity
Overview
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Verification
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Claims other papers make about this one
Each is checked against this paper’s own text: does it say what the citing paper says it does?
Spacer sequences feature phage- or plasmid-derived genetic material and constitute the key elements to the specificity of CRISPR's defence mechanisms.
“Spacer sequences feature phage- or plasmid-derived genetic material and constitute the key elements to the specificity of CRISPR’s defene mechanisms [10].”
From CRISPR-Cas: Converting A Bacterial Defence Mechanism into A State-of-the-Art Genetic Manipulation Tool (2019) · cites this paper as [10]
CRISPR loci are composed of short repeat sequences usually ranging from 28 to 37 bp, separated by spacers each bearing a unique sequence of similar length.
“The CRISPR locus, as the full name dictates, is composed of short repeat sequences, usually ranging from 28 to 37 bp (base pairs) [10], separated by spacers each bearing a unique sequence of similar length.”
From CRISPR-Cas: Converting A Bacterial Defence Mechanism into A State-of-the-Art Genetic Manipulation Tool (2019) · cites this paper as [10]
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
Citations
Cites
A Programmable Dual-RNA–Guided DNA Endonuclease in Adaptive Bacterial Immunity
Jinek, M., Chylinski, K., Fonfara, I., Hauer, M., Doudna, J. A., & Charpentier, E. (2012) · Science · doi:10.1126/science.1225829 · Cited by 17,116
Multiplex Genome Engineering Using CRISPR/Cas Systems
Cong, L., Ran, F. A., Cox, D., Lin, S., Barretto, R., Habib, N., Hsu, P. D., Wu, X., Jiang, W., Marraffini, L. A., et al. (2013) · Science · doi:10.1126/science.1231143 · Cited by 15,339
Self-citationRNA-Guided Human Genome Engineering via Cas9
Mali, P., Yang, L., Esvelt, K. M., Aach, J., Guell, M., DiCarlo, J. E., Norville, J. E., & Church, G. M. (2013) · Science · doi:10.1126/science.1232033 · Cited by 9,210
Genome-scale CRISPR-Cas9 knockout screening in human cells
Shalem, O., Sanjana, N. E., Hartenian, E., Shi, X., Scott, D. A., Mikkelsen, T. S., Heckl, D., Ebert, B. L., Root, D. E., Doench, J. G., et al. (2014) · Science · doi:10.1126/science.1247005 · Cited by 5,234
Repurposing CRISPR as an RNA-Guided Platform for Sequence-Specific Control of Gene Expression
Qi, L. S., Larson, M. H., Gilbert, L. A., Doudna, J. A., Weissman, J. S., Arkin, A. P., & Lim, W. A. (2013) · Cell · doi:10.1016/j.cell.2013.02.022 · Cited by 5,016
CRISPR-Mediated Modular RNA-Guided Regulation of Transcription in Eukaryotes
Gilbert, L. A., Larson, M. H., Morsut, L., Liu, Z., Brar, G. A., Torres, S. E., Stern-Ginossar, N., Brandman, O., Whitehead, E. H., Doudna, J. A., et al. (2013) · Cell · doi:10.1016/j.cell.2013.06.044 · Cited by 3,696 · cited 5×
“In mammalian cells, dCas9 can be fused to transcriptional activators such as VP64 and the p65 activator domain (Figure 3) (Gilbert et al., 2013; Maeder et al., 2013; Mali et al., 2013a).”
BackgroundInfluentialWang, H., Yang, H., Shivalila, C. S., Dawlaty, M. M., Cheng, A. W., Zhang, F., & Jaenisch, R. (2013) · Cell · doi:10.1016/j.cell.2013.04.025 · Cited by 3,495
High-Frequency off-Target Mutagenesis Induced by CRISPR-Cas Nucleases in Human Cells
Fu, Y., Foden, J. A., Khayter, C., Maeder, M. L., Reyon, D., Joung, J. K., & Sander, J. D. (2013) · Nature Biotechnology · doi:10.1038/nbt.2623 · Cited by 3,292
CRISPR RNA Maturation by Trans-Encoded Small RNA and Host Factor RNase III
Deltcheva, E., Chylinski, K., Sharma, C. M., Gonzales, K., Chao, Y., Pirzada, Z. A., Eckert, M. R., Vogel, J., & Charpentier, E. (2011) · Nature · doi:10.1038/nature09886 · Cited by 2,563
RNA-guided editing of bacterial genomes using CRISPR-Cas systems
Jiang, W., Bikard, D., Cox, D., Zhang, F., & Marraffini, L. A. (2013) · Nature Biotechnology · doi:10.1038/nbt.2508 · Cited by 2,429
Crystal structure of Cas9 in complex with guide RNA and target DNA
Nishimasu, H., Ran, F. A., Hsu, P. D., Konermann, S., Shehata, S. I., Dohmae, N., Ishitani, R., Zhang, F., & Nureki, O. (2014) · Cell · doi:10.1016/j.cell.2014.02.001 · Cited by 2,306
RNA-programmed genome editing in human cells
Jinek, M., East, A., Cheng, A., Lin, S., Ma, E., & Doudna, J. (2013) · eLife · doi:10.7554/elife.00471 · Cited by 2,098
RNA-guided genetic silencing systems in bacteria and archaea
Wiedenheft, B., Sternberg, S. H., & Doudna, J. A. (2012) · Nature · doi:10.1038/nature10886 · Cited by 1,851
Mali, P., Aach, J., Stranges, P. B., Esvelt, K. M., Moosburner, M., Kosuri, S., Yang, L., & Church, G. M. (2013) · Nature Biotechnology · doi:10.1038/nbt.2675 · Cited by 1,752 · cited 5×
“In mammalian cells, dCas9 can be fused to transcriptional activators such as VP64 and the p65 activator domain (Figure 3) (Gilbert et al., 2013; Maeder et al., 2013; Mali et al., 2013a).”
BackgroundInfluentialStructures of Cas9 endonucleases reveal RNA-mediated conformational activation
Jinek, M., Jiang, F., Taylor, D. W., Sternberg, S. H., Kaya, E., Ma, E., Anders, C., Hauer, M., Zhou, K., Lin, S., et al. (2014) · Science · doi:10.1126/science.1247997 · Cited by 1,230
CRISPR-mediated adaptive immune systems in bacteria and archaea
Sorek, R., Lawrence, C. M., & Wiedenheft, B. (2013) · Annual Review of Biochemistry · doi:10.1146/annurev-biochem-072911-172315 · Cited by 668
Harnessing the CRISPR/Cas9 system to disrupt latent HIV-1 provirus
Ebina, H., Misawa, N., Kanemura, Y., & Koyanagi, Y. (2013) · Scientific Reports · doi:10.1038/srep02510 · Cited by 565 · cited 1×
“The viral resistance upside is illustrated by a recent report showing excision of HIV-1 provirus in human (Ebina et al., 2013), further highlighting the broad promise of this technology for viral immunity beyond the natural hosts of CRISPR-Cas systems.”
Background
Flagged first, then by citations
Research works printed but not linked: 93
- Andersson, 2008, Virus population dynamics and acquired virus resistance in natural microbial communities, Science, 320, 1047, 10.1126/science.1157358 · DOI
- Barrangou, 2012, RNA-mediated programmable DNA cleavage, Nat. Biotechnol., 30, 836, 10.1038/nbt.2357 · DOI
- Barrangou, 2013, CRISPR-Cas systems and RNA-guided interference, Wiley Interdiscip Rev. RNA, 4, 267, 10.1002/wrna.1159 · DOI
- Barrangou, 2012, CRISPR: new horizons in phage resistance and strain identification, Annu. Rev. Food Sci. Technol., 3, 143, 10.1146/annurev-food-022811-101134 · DOI
- Barrangou, 2007, CRISPR provides acquired resistance against viruses in prokaryotes, Science, 315, 1709, 10.1126/science.1138140 · DOI · Paper page
- Barrangou, 2013, Genomic impact of CRISPR immunization against bacteriophages, Biochem. Soc. Trans., 41, 1383, 10.1042/BST20130160 · DOI
- Beloglazova, 2008, A novel family of sequence-specific endoribonucleases associated with the clustered regularly interspaced short palindromic repeats, J. Biol. Chem., 283, 20361, 10.1074/jbc.M803225200 · DOI
- Bikard, 2012, CRISPR interference can prevent natural transformation and virulence acquisition during in vivo bacterial infection, Cell Host Microbe, 12, 177, 10.1016/j.chom.2012.06.003 · DOI
- Bikard, 2013, Programmable repression and activation of bacterial gene expression using an engineered CRISPR-Cas system, Nucleic Acids Res., 41, 7429, 10.1093/nar/gkt520 · DOI · Paper page
- Bolotin, 2005, Clustered regularly interspaced short palindrome repeats (CRISPRs) have spacers of extrachromosomal origin, Microbiology, 151, 2551, 10.1099/mic.0.28048-0 · DOI
- Bondy-Denomy, 2013, Bacteriophage genes that inactivate the CRISPR/Cas bacterial immune system, Nature, 493, 429, 10.1038/nature11723 · DOI
- Brouns, 2008, Small CRISPR RNAs guide antiviral defense in prokaryotes, Science, 321, 960, 10.1126/science.1159689 · DOI · Paper page
- Carte, 2008, Cas6 is an endoribonuclease that generates guide RNAs for invader defense in prokaryotes, Genes Dev., 22, 3489, 10.1101/gad.1742908 · DOI
- Chen, 2013, Dynamic imaging of genomic loci in living human cells by an optimized CRISPR/Cas system, Cell, 155, 1479, 10.1016/j.cell.2013.12.001 · DOI
- Childs, 2012, Multiscale model of CRISPR-induced coevolutionary dynamics: diversification at the interface of Lamarck and Darwin, Evolution, 66, 2015, 10.1111/j.1558-5646.2012.01595.x · DOI
- Datsenko, 2012, Molecular memory of prior infections activates the CRISPR/Cas adaptive bacterial immunity system, Nat. Commun., 3, 945, 10.1038/ncomms1937 · DOI · Paper page
- Deriano, 2013, Modernizing the nonhomologous end-joining repertoire: alternative and classical NHEJ share the stage, Annu. Rev. Genet., 47, 433, 10.1146/annurev-genet-110711-155540 · DOI
- Deveau, 2008, Phage response to CRISPR-encoded resistance in Streptococcus thermophilus, J. Bacteriol., 190, 1390, 10.1128/JB.01412-07 · DOI
- Edgar, 2010, The Escherichia coli CRISPR system protects from λ lysogenization, lysogens, and prophage induction, J. Bacteriol., 192, 6291, 10.1128/JB.00644-10 · DOI
- Erdmann, 2012, Selective and hyperactive uptake of foreign DNA by adaptive immune systems of an archaeon via two distinct mechanisms, Mol. Microbiol., 85, 1044, 10.1111/j.1365-2958.2012.08171.x · DOI · Paper page
- Fineran, 2012, Memory of viral infections by CRISPR-Cas adaptive immune systems: acquisition of new information, Virology, 434, 202, 10.1016/j.virol.2012.10.003 · DOI
- Garneau, 2010, The CRISPR/Cas bacterial immune system cleaves bacteriophage and plasmid DNA, Nature, 468, 67, 10.1038/nature09523 · DOI
- Gasiunas, 2012, Cas9-crRNA ribonucleoprotein complex mediates specific DNA cleavage for adaptive immunity in bacteria, Proc. Natl. Acad. Sci. USA, 109, E2579, 10.1073/pnas.1208507109 · DOI · Paper page
- Goren, 2012, The bacterial CRISPR/Cas system as analog of the mammalian adaptive immune system, RNA Biol., 9, 549, 10.4161/rna.20177 · DOI
- Grissa, 2007, The CRISPRdb database and tools to display CRISPRs and to generate dictionaries of spacers and repeats, BMC Bioinformatics, 8, 172, 10.1186/1471-2105-8-172 · DOI · Paper page
- Groenen, 1993, Nature of DNA polymorphism in the direct repeat cluster of Mycobacterium tuberculosis; application for strain differentiation by a novel typing method, Mol. Microbiol., 10, 1057, 10.1111/j.1365-2958.1993.tb00976.x · DOI
- Haerter, 2012, Spatial structure and Lamarckian adaptation explain extreme genetic diversity at CRISPR locus, MBio., 3, 10.1128/mBio.00126-12 · DOI
- Hale, 2008, Prokaryotic silencing (psi)RNAs in Pyrococcus furiosus, RNA, 14, 2572, 10.1261/rna.1246808 · DOI
- Hale, 2009, RNA-guided RNA cleavage by a CRISPR RNA-Cas protein complex, Cell, 139, 945, 10.1016/j.cell.2009.07.040 · DOI · Paper page
- Hale, 2012, Essential features and rational design of CRISPR RNAs that function with the Cas RAMP module complex to cleave RNAs, Mol. Cell, 45, 292, 10.1016/j.molcel.2011.10.023 · DOI
- Han, 2009, SSO1450—a CAS1 protein from Sulfolobus solfataricus P2 with high affinity for RNA and DNA, FEBS Lett., 583, 1928, 10.1016/j.febslet.2009.04.047 · DOI
- Hatoum-Aslan, 2011, Mature clustered, regularly interspaced, short palindromic repeats RNA (crRNA) length is measured by a ruler mechanism anchored at the precursor processing site, Proc. Natl. Acad. Sci. USA, 108, 21218, 10.1073/pnas.1112832108 · DOI · Paper page
- Hatoum-Aslan, 2013, A ruler protein in a complex for antiviral defense determines the length of small interfering CRISPR RNAs, J. Biol. Chem., 288, 27888, 10.1074/jbc.M113.499244 · DOI
- Hatoum-Aslan, 2014, Genetic characterization of antiplasmid immunity through a type III-A CRISPR-Cas system, J. Bacteriol., 196, 310, 10.1128/JB.01130-13 · DOI
- Heidelberg, 2009, Germ warfare in a microbial mat community: CRISPRs provide insights into the co-evolution of host and viral genomes, PLoS ONE, 4, e4169, 10.1371/journal.pone.0004169 · DOI
- Held, 2009, Viral biogeography revealed by signatures in Sulfolobus islandicus genomes, Environ. Microbiol., 11, 457, 10.1111/j.1462-2920.2008.01784.x · DOI
- Horvath, 2008, Diversity, activity, and evolution of CRISPR loci in Streptococcus thermophilus, J. Bacteriol., 190, 1401, 10.1128/JB.01415-07 · DOI
- Horvath, 2009, Comparative analysis of CRISPR loci in lactic acid bacteria genomes, Int. J. Food Microbiol., 131, 62, 10.1016/j.ijfoodmicro.2008.05.030 · DOI
- Ishino, 1987, Nucleotide sequence of the iap gene, responsible for alkaline phosphatase isozyme conversion in Escherichia coli, and identification of the gene product, J. Bacteriol., 169, 5429, 10.1128/jb.169.12.5429-5433.1987 · DOI · Paper page
- Jansen, 2002, Identification of genes that are associated with DNA repeats in prokaryotes, Mol. Microbiol., 43, 1565, 10.1046/j.1365-2958.2002.02839.x · DOI
- Jiang, 2013, Dealing with the evolutionary downside of CRISPR immunity: bacteria and beneficial plasmids, PLoS Genet., 9, e1003844, 10.1371/journal.pgen.1003844 · DOI
- Koonin, 2013, CRISPR-Cas: evolution of an RNA-based adaptive immunity system in prokaryotes, RNA Biol., 10, 679, 10.4161/rna.24022 · DOI
- Koonin, 2009, Is evolution Darwinian or/and Lamarckian?, Biol. Direct, 4, 42, 10.1186/1745-6150-4-42 · DOI
- Labrie, 2010, Bacteriophage resistance mechanisms, Nat. Rev. Microbiol., 8, 317, 10.1038/nrmicro2315 · DOI
- Levin, 2013, The population and evolutionary dynamics of phage and bacteria with CRISPR-mediated immunity, PLoS Genet., 9, e1003312, 10.1371/journal.pgen.1003312 · DOI
- Maeder, 2013, CRISPR RNA-guided activation of endogenous human genes, Nat. Methods, 10, 977, 10.1038/nmeth.2598 · DOI · Paper page
- Makarova, 2002, A DNA repair system specific for thermophilic Archaea and bacteria predicted by genomic context analysis, Nucleic Acids Res., 30, 482, 10.1093/nar/30.2.482 · DOI
- Makarova, 2006, A putative RNA-interference-based immune system in prokaryotes: computational analysis of the predicted enzymatic machinery, functional analogies with eukaryotic RNAi, and hypothetical mechanisms of action, Biol. Direct, 1, 7, 10.1186/1745-6150-1-7 · DOI · Paper page
- Makarova, 2011, Unification of Cas protein families and a simple scenario for the origin and evolution of CRISPR-Cas systems, Biol. Direct, 6, 38, 10.1186/1745-6150-6-38 · DOI
- Makarova, 2011, Evolution and classification of the CRISPR-Cas systems, Nat. Rev. Microbiol., 9, 467, 10.1038/nrmicro2577 · DOI · Paper page
- Makarova, 2013, The basic building blocks and evolution of CRISPR-cas systems, Biochem. Soc. Trans., 41, 1392, 10.1042/BST20130038 · DOI
- Malina, 2013, Repurposing CRISPR/Cas9 for in situ functional assays, Genes Dev., 27, 2602, 10.1101/gad.227132.113 · DOI
- Marraffini, 2013, CRISPR-Cas immunity against phages: its effects on the evolution and survival of bacterial pathogens, PLoS Pathog., 9, e1003765, 10.1371/journal.ppat.1003765 · DOI
- Marraffini, 2008, CRISPR interference limits horizontal gene transfer in staphylococci by targeting DNA, Science, 322, 1843, 10.1126/science.1165771 · DOI
- Mojica, 2005, Intervening sequences of regularly spaced prokaryotic repeats derive from foreign genetic elements, J. Mol. Evol., 60, 174, 10.1007/s00239-004-0046-3 · DOI
- Mojica, 2009, Short motif sequences determine the targets of the prokaryotic CRISPR defence system, Microbiology, 155, 733, 10.1099/mic.0.023960-0 · DOI · Paper page
- Nam, 2012, Double-stranded endonuclease activity in Bacillus halodurans clustered regularly interspaced short palindromic repeats (CRISPR)-associated Cas2 protein, J. Biol. Chem., 287, 35943, 10.1074/jbc.M112.382598 · DOI
- Nozawa, 2011, CRISPR inhibition of prophage acquisition in Streptococcus pyogenes, PLoS ONE, 6, e19543, 10.1371/journal.pone.0019543 · DOI
- Paez-Espino, 2013, Strong bias in the bacterial CRISPR elements that confer immunity to phage, Nat. Commun., 4, 1430, 10.1038/ncomms2440 · DOI
- Pennisi, 2013, The CRISPR craze, Science, 341, 833, 10.1126/science.341.6148.833 · DOI · Paper page
- Pourcel, 2005, CRISPR elements in Yersinia pestis acquire new repeats by preferential uptake of bacteriophage DNA, and provide additional tools for evolutionary studies, Microbiology, 151, 653, 10.1099/mic.0.27437-0 · DOI
- Pride, 2011, Analysis of streptococcal CRISPRs from human saliva reveals substantial sequence diversity within and between subjects over time, Genome Res., 21, 126, 10.1101/gr.111732.110 · DOI
- Pul, 2010, Identification and characterization of E. coli CRISPR-cas promoters and their silencing by H-NS, Mol. Microbiol., 75, 1495, 10.1111/j.1365-2958.2010.07073.x · DOI · Paper page
- Ramia, 2013, Staphylococcus epidermidis Csm1 is a 3′-5′ exonuclease, Nucleic Acids Res, 42, 1129, 10.1093/nar/gkt914 · DOI
- Ran, 2013, Double nicking by RNA-guided CRISPR Cas9 for enhanced genome editing specificity, Cell, 154, 1380, 10.1016/j.cell.2013.08.021 · DOI · Paper page
- Reeks, 2013, CRISPR interference: a structural perspective, Biochem. J., 453, 155, 10.1042/BJ20130316 · DOI
- Samai, 2010, Structure of a CRISPR-associated protein Cas2 from Desulfovibrio vulgaris, Acta Crystallogr. Sect. F Struct. Biol. Cryst. Commun., 66, 1552, 10.1107/S1744309110039801 · DOI
- Sampson, 2013, A CRISPR/Cas system mediates bacterial innate immune evasion and virulence, Nature, 497, 254, 10.1038/nature12048 · DOI
- Sapranauskas, 2011, The Streptococcus thermophilus CRISPR/Cas system provides immunity in Escherichia coli, Nucleic Acids Res., 39, 9275, 10.1093/nar/gkr606 · DOI
- Sashital, 2012, Mechanism of foreign DNA selection in a bacterial adaptive immune system, Mol. Cell, 46, 606, 10.1016/j.molcel.2012.03.020 · DOI
- Savitskaya, 2013, High-throughput analysis of type I-E CRISPR/Cas spacer acquisition in E. coli, RNA Biol., 10, 716, 10.4161/rna.24325 · DOI
- Seed, 2013, A bacteriophage encodes its own CRISPR/Cas adaptive response to evade host innate immunity, Nature, 494, 489, 10.1038/nature11927 · DOI
- Semenova, 2011, Interference by clustered regularly interspaced short palindromic repeat (CRISPR) RNA is governed by a seed sequence, Proc. Natl. Acad. Sci. USA., 108, 10098, 10.1073/pnas.1104144108 · DOI · Paper page
- Shariat, 2013, CRISPR-MVLST subtyping of Salmonella enterica subsp. enterica serovars Typhimurium and Heidelberg and application in identifying outbreak isolates, BMC Microbiol., 13, 254, 10.1186/1471-2180-13-254 · DOI
- Shuman, 2007, Bacterial DNA repair by non-homologous end joining, Nat. Rev. Microbiol., 5, 852, 10.1038/nrmicro1768 · DOI
- Sinkunas, 2013, In vitro reconstitution of Cascade-mediated CRISPR immunity in Streptococcus thermophilus, EMBO J., 32, 385, 10.1038/emboj.2012.352 · DOI · Paper page
- Smih, 1995, Double-strand breaks at the target locus stimulate gene targeting in embryonic stem cells, Nucleic Acids Res., 23, 5012, 10.1093/nar/23.24.5012 · DOI
- Staals, 2013, Structure and activity of the RNA-targeting Type III-B CRISPR-Cas complex of Thermus thermophilus, Mol. Cell, 52, 135, 10.1016/j.molcel.2013.09.013 · DOI
- Sternberg, 2014, DNA interrogation by the CRISPR RNA-guided endonuclease Cas9, Nature, 507, 62, 10.1038/nature13011 · DOI
- Sun, 2013, Phage mutations in response to CRISPR diversification in a bacterial population, Environ. Microbiol., 15, 463, 10.1111/j.1462-2920.2012.02879.x · DOI
- Swarts, 2012, CRISPR interference directs strand specific spacer acquisition, PLoS ONE, 7, e35888, 10.1371/journal.pone.0035888 · DOI
- Tyson, 2008, Rapidly evolving CRISPRs implicated in acquired resistance of microorganisms to viruses, Environ. Microbiol., 10, 200, 10.1111/j.1462-2920.2007.01444.x · DOI
- Wang, 2013, Genetic Screens in Human Cells Using the CRISPR/Cas9 System, Science, 343, 80, 10.1126/science.1246981 · DOI · Paper page
- Westra, 2010, H-NS-mediated repression of CRISPR-based immunity in Escherichia coli K12 can be relieved by the transcription activator LeuO, Mol. Microbiol., 77, 1380, 10.1111/j.1365-2958.2010.07315.x · DOI
- Westra, 2012, The CRISPRs, they are a-changin’: how prokaryotes generate adaptive immunity, Annu. Rev. Genet., 46, 311, 10.1146/annurev-genet-110711-155447 · DOI
- Wiedenheft, 2009, Structural basis for DNase activity of a conserved protein implicated in CRISPR-mediated genome defense, Structure, 17, 904, 10.1016/j.str.2009.03.019 · DOI · Paper page
- Wiedenheft, 2011, RNA-guided complex from a bacterial immune system enhances target recognition through seed sequence interactions, Proc. Natl. Acad. Sci. USA, 108, 10092, 10.1073/pnas.1102716108 · DOI
- Wood, 2011, Targeted genome editing across species using ZFNs and TALENs, Science, 333, 307, 10.1126/science.1207773 · DOI
- Yosef, 2011, High-temperature protein G is essential for activity of the Escherichia coli clustered regularly interspaced short palindromic repeats (CRISPR)/Cas system, Proc. Natl. Acad. Sci. USA, 108, 20136, 10.1073/pnas.1113519108 · DOI
- Yosef, 2012, Proteins and DNA elements essential for the CRISPR adaptation process in Escherichia coli, Nucleic Acids Res., 40, 5569, 10.1093/nar/gks216 · DOI · Paper page
- Zhang, 2012, Structure and mechanism of the CMR complex for CRISPR-mediated antiviral immunity, Mol. Cell, 45, 303, 10.1016/j.molcel.2011.12.013 · DOI
- Zhang, 2013, Processing-independent CRISPR RNAs limit natural transformation in Neisseria meningitidis, Mol. Cell, 50, 488, 10.1016/j.molcel.2013.05.001 · DOI
- Zinder, 1980, Portraits of viruses: RNA phage, Intervirology, 13, 257, 10.1159/000149133 · DOI
Cited by
Sorted by citations
The new frontier of genome engineering with CRISPR-Cas9
Doudna, J. A., & Charpentier, E. (2014) · Science · doi:10.1126/science.1258096 · Cited by 7,062
RNA virus interference via CRISPR/Cas13a system in plants
Aman, R., Ali, Z., Butt, H., Mahas, A., Aljedaani, F., Khan, M. Z., Ding, S., & Mahfouz, M. (2018) · Genome Biology · doi:10.1186/s13059-017-1381-1 · Cited by 1,497
Conformational control of DNA target cleavage by CRISPR–Cas9
Sternberg, S. H., LaFrance, B., Kaplan, M., & Doudna, J. A. (2015) · Nature · doi:10.1038/nature15544 · Cited by 627
Sun, Z., Harris, H. M. B., McCann, A., Guo, C., Argimón, S., Zhang, W., Yang, X., Jeffery, I. B., Cooney, J. C., Kagawa, T. F., et al. (2015) · Nature Communications · doi:10.1038/ncomms9322 · Cited by 543
Self-citationOrigins and evolution of CRISPR-Cas systems
Koonin, E. V., & Makarova, K. S. (2019) · Philosophical Transactions of the Royal Society B: Biological Sciences · doi:10.1098/rstb.2018.0087 · Cited by 494
A conformational checkpoint between DNA binding and cleavage by CRISPR-Cas9
Dagdas, Y. S., Chen, J. S., Sternberg, S. H., Doudna, J. A., & Yildiz, A. (2017) · Science Advances · doi:10.1126/sciadv.aao0027 · Cited by 293
Karcher, N., Nigro, E., Punčochář, M., Blanco-Míguez, A., Ciciani, M., Manghi, P., Zolfo, M., Cumbo, F., Manara, S., Golzato, D., et al. (2021) · Genome Biology · doi:10.1186/s13059-021-02427-7 · Cited by 159
Loureiro, A., & da Silva, G. J. (2019) · Antibiotics · doi:10.3390/antibiotics8010018 · Cited by 129
Characterization and Repurposing of Type I and Type II CRISPR–Cas Systems in Bacteria
Hidalgo-Cantabrana, C., Goh, Y. J., & Barrangou, R. (2019) · Journal of Molecular Biology · doi:10.1016/j.jmb.2018.09.013 · Cited by 63
Self-citationInteraction of phages, bacteria, and the human immune system: Evolutionary changes in phage therapy
Jariah, R. O. A., & Hakim, M. S. (2019) · Reviews in Medical Virology · doi:10.1002/rmv.2055 · Cited by 40
Metadata
- Authors
- Barrangou, R., & Marraffini, L. A.
- Venue
- Molecular Cell
- Publisher
- Elsevier BV
- Published
- 2014-04
- Volume
- 54
- Issue
- 2
- Pages
- 234-244
- ISSN
- 1097-2765
- PMC
- PMC4025954
- Cited by
- 832
- References
- 17
- Language
- en
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review