Dynamic IL-6R/STAT3 signaling leads to heterogeneity of metabolic phenotype in pancreatic ductal adenocarcinoma cells
Open accessAbstract
Malignancy is enabled by pro-growth mutations and adequate energy provision. However, global metabolic activation would be self-terminating if it depleted tumor resources. Cancer cells could avoid this by rationing resources, e.g., dynamically switching between "baseline" and "activated" metabolic states. Using single-cell metabolic phenotyping of pancreatic ductal adenocarcinoma cells, we identify MIA-PaCa-2 as having broad heterogeneity of fermentative metabolism. Sorting by a readout of lactic acid permeability separates cells by fermentative and respiratory rates. Contrasting phenotypes persist for 4 days and are unrelated to cell cycling or glycolytic/respiratory gene expression; however, transcriptomics links metabolically active cells with interleukin-6 receptor (IL-6R)-STAT3 signaling. We verify this by IL-6R/STAT3 knockdowns and sorting by IL-6R status. IL-6R/STAT3 activates fermentation and transcription of its inhibitor, SOCS3, resulting in delayed negative feedback that underpins transitions between metabolic states. Among cells manifesting wide metabolic heterogeneity, dynamic IL-6R/STAT3 signaling may allow cell cohorts to take turns in progressing energy-intense processes without depleting shared resources.
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Written from the paper’s full text.
TL;DR
Single-cell metabolic phenotyping of pancreatic ductal adenocarcinoma (PDAC) lines identifies MIA PaCa-2 as having broad heterogeneity in fermentative metabolism, separable by lactic acid permeability (PHLac). The study links this dynamic heterogeneity to IL-6R/STAT3 signaling and SOCS3-mediated delayed negative feedback, producing short-lived metabolic contrasts rather than hardwired sub-populations.
Key findings
- PHLac-sorted MIA PaCa-2 sub-populations showed 3-fold higher fermentative and 4-fold higher respiratory rates in PHLachigh cells after 24 h, but the metabolic contrast decayed with a time constant of ∼30 h and collapsed by day 4.
- PHLachigh cells grew 4-fold faster than PHLaclow cells over 4 days, yet both sub-populations returned symmetrically toward a mid-point metabolic phenotype, arguing against a heritable growth advantage.
- RNA-seq identified 2,156 genes enriched in PHLachigh and 1,510 in PHLaclow cells; canonical glycolysis/gluconeogenesis and oxidative phosphorylation were not enriched (p.adj = 0.79 for both), while IL-6R/STAT3 signaling was prominently upregulated in PHLachigh cells.
- IL-6R or STAT3 knockdown and STAT3 inhibition reduced fermentative rate; SOCS3 knockdown increased STAT3 phosphorylation and accelerated fermentative/respiratory rates, and SOCS3 knockout produced a major acid shift upon MCT inhibition (paired t test p = 0.0072), supporting delayed negative feedback.
Methods
- Single-cell fluorimetric assays measured intracellular pH with cSNARF1 and rapid microperfusion switching to 2 mM CHC to block monocarboxylate transporters, yielding fermentative rate; PHLac was measured from pHi responses to lactate-containing versus lactate-free microstreams.
- FACS-compatible sorting used cSNARF1-loaded cells equilibrated with 60 mM lactate then transferred to lactate-free medium; sub-populations were phenotyped by real-time medium acidification and O2 consumption, RNA-seq, RT-qPCR, immunoblotting, siRNA knockdown, CRISPR/Cas9 SOCS3 knockout, immunofluorescence, and MIA PaCa-2 xenografts in nude mice.
- RNA-seq was performed on four independent sorts with DESeq2, clusterProfiler, and Ingenuity Pathway Analysis; metabolic and growth assays used plate-based fluorimetry and sulforhodamine B, with statistics by t tests or ANOVA as described.
Limitations
- The paper states that FACS yield was low because of the short sorting window, limiting material for metabolomics or proteomics; major transcriptional differences between sub-populations may involve pathways other than IL-6R/STAT3/SOCS3; the mechanism was studied in MIA PaCa-2 and may not apply to other cancer cells; and experiments used 2D monolayers, omitting tumor microenvironment gradients.
- The paper also states that in vivo benefit of dynamic metabolic heterogeneity remains to be demonstrated experimentally.
- Evident from the text: the study is limited to PDAC cell lines and one xenograft model, so clinical or primary-tumor relevance is not established; the causal role of other DEGs and post-translational mechanisms is not fully dissected.
Model-written summary. Check it against the paper before relying on it.
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Cites
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Claims the paper makes
37 of 47 cited sources checked · 10 supported · 1 flagged · accuracy not yet measured
- Interpretationown data
The faster growth of the metabolically activated sub-population suggests that a conducive metabolic state drives cell division rather than cell-cycle progression driving metabolic responses.
“suggesting that a conducive metabolic state drives cell division rather than vice versa (cell-cycle progression driving metabolic responses8)”
Quote in the paperSubstantial claim1 of 1 sources checked- cites [8] Takhaveev, 2023, Temporal segregation of biosynthetic processes is responsible for metabolic oscillations during the budding yeast cell cycle, Nat. Metab. source
The citation is attached to the parenthetical claim that cell-cycle progression drives metabolic responses, not to the citing authors’ conclusion about faster-growing cells. In the Discussion (page unavailable), the source says biosynthetic and metabolic oscillations are ‘at least not primarily’ generated by cell-cycle activity; it instead links changes in primary metabolism to changing biosynthetic demands. (LLM, conf=0.88)
Checked by a reasoning model — may be wrong.
Experimental — accuracy not yet measured
- Interpretationreasoning
STAT3 activation potentiates IL-6 signaling by increasing receptor and ligand levels.
“STAT3 activation potentiates IL-6 signaling by increasing receptor and ligand levels”
Quote in the paperSubstantial claim4 of 4 sources checked- cites [35] Zhang, 2020, An integrative ENCODE resource for cancer genomics, Nat. Commun. source
The Results section on regulatory networks discusses MYC and SUB1 regulation, not STAT3 activation or IL-6 signaling. Searches for STAT3, IL-6, and receptor and ligand levels found no passage in our copy addressing the claimed mechanism. (LLM, conf=0.76)
Experimental — accuracy not yet measured - cites [36] Moore, 2020, A curated benchmark of enhancer-gene interactions for evaluating enhancer-target gene prediction methods, Genome Biol. source
The Results section discusses enhancer–gene interaction datasets and gene expression, not IL-6 signaling. Searches for STAT3 activation and for STAT3, IL-6, receptor, and ligand returned no passage addressing the claimed mechanism. (LLM, conf=0.75)
Experimental — accuracy not yet measured - cites [37] Wang, 2013, STAT3 activation in response to IL-6 is prolonged by the binding of IL-6 receptor to EGF receptor, Proc. Natl. Acad. Sci. USA source
The Discussion (page not provided) describes IL-6-driven secretion of more IL-6 and a second wave of STAT3 activation, supporting a feedback effect on ligand availability. It describes association of IL-6R with EGFR, not an increase in receptor levels caused by STAT3 activation. (LLM, conf=0.84)
Experimental — accuracy not yet measured - cites [38] Huang, 2010, Signal transducer and activator of transcription 3 activation up-regulates interleukin-6 autocrine production: a biochemical and genetic study of established cancer cell lines and clinical isolated human cancer cells, Mol. Cancer source
The Discussion (page unavailable) reports that STAT3 contributes to IL-6 autocrine production in the cancer cells tested, supporting increased ligand production. The Background identifies the IL-6 receptor subunits gp80 and gp130, but the cited passages do not show that STAT3 increases receptor levels. (LLM, conf=0.88)
Experimental — accuracy not yet measured
- Study design and conductcitation
The rate of intracellular acidification upon rapid MCT inhibition is a single-cell readout of fermentative rate.
“Consequently, the rate of intracellular acidification is a single-cell readout of fermentative rate.22”
Quote in the paperSubstantial claim1 of 1 sources checked- cites [22] Blaszczak, 2022, Autoregulation of H(+)/lactate efflux prevents monocarboxylate transport (MCT) inhibitors from reducing glycolytic lactic acid production, Br. J. Cancer source
- Premisecitation
IL-6R evokes a myriad of responses, including metabolic actions, through STAT3.
“IL-6R evokes a myriad of responses, including metabolic actions, through STAT3.31,32,33,34”
Quote in the paperSubstantial claim4 of 4 sources checked- cites [31] Bollrath, 2009, gp130-mediated Stat3 activation in enterocytes regulates cell survival and cell-cycle progression during colitis-associated tumorigenesis, Cancer Cell source
The Significance section explains that IL-6 receptor signaling through gp130 engages STAT3, and the Discussion describes effects on cell survival and proliferation. The passages do not describe metabolic actions, so that specific part of the claim is unsupported by our copy. (LLM, conf=0.85)
Experimental — accuracy not yet measured - cites [32] Cronin, 2016, Signal transducer and activator of transcription-3 licenses Toll-like receptor 4-dependent interleukin (IL)-6 and IL-8 production via IL-6 receptor-positive feedback in endometrial cells, Mucosal Immunol. source
The Introduction states that IL-6 activates STAT3 through the IL-6 receptor, and the Discussion says IL6R activation changes target-gene expression via STAT3. Neither passage supports the claimed metabolic actions; the paper discusses inflammatory responses in endometrial cells. Page numbers are unavailable in our copy. (LLM, conf=0.86)
Experimental — accuracy not yet measured - cites [33] Grivennikov, 2009, IL-6 and Stat3 are required for survival of intestinal epithelial cells and development of colitis-associated cancer, Cancer Cell source
The Discussion (page unavailable) says IL-6 binding to its gp130-associated receptor activates the JAK1/2–STAT3 pathway and identifies STAT3 as a critical effector in colitis-associated cancer. It discusses effects on intestinal epithelial cell survival and proliferation, but does not establish the claimed metabolic actions through STAT3. (LLM, conf=0.87)
Experimental — accuracy not yet measured - cites [34] Teoh, 2020, IL6R-STAT3-ADAR1 (P150) interplay promotes oncogenicity in multiple myeloma with 1q21 amplification, Haematologica source
The Introduction (page not provided) describes IL-6 binding to IL6R and activating STAT3, while the Discussion reports resulting growth and proliferation in myeloma cells. Neither passage identifies metabolic actions as one of the responses, so that part of the claim is unsupported by our copy. (LLM, conf=0.85)
Experimental — accuracy not yet measured
- Findingown data
Supplementation with IL-6 or hyIL-6 prior to metabolic phenotyping has no added effect in MIA PaCa-2 cells.
“supplementation with IL-6 or its synthetic fusion protein, hyper-IL-6 (hyIL-6), 24 prior to metabolic phenotyping had no added effect”
Quote in the paperSubstantial claim1 of 1 sources checked- cites [24] Blaszczak, 2021, Cost-Effective Real-Time Metabolic Profiling of Cancer Cell Lines for Plate-Based Assays, Chemosensors source
Section 3.4.3 describes metabolic measurements in MIA-PaCa-2 cells after changing the substrate or adding rotenone. The Appendix figure captions likewise describe substrate and rotenone experiments, but neither these passages nor searches for IL-6 and hyIL-6 address cytokine supplementation or whether it had no added effect. No page number is provided in our copy for these passages. (LLM, conf=0.76)
Experimental — accuracy not yet measured
- Premisecitation
Evidence points to a substantial level of metabolic heterogeneity even in aggressive cancers.
“evidence points to a substantial level of metabolic heterogeneity even in aggressive cancers”
Quote in the paperSubstantial claim2 of 2 sources checked- cites [6] Lawson, 2018, Tumour heterogeneity and metastasis at single-cell resolution, Nat. Cell Biol. source
The Abstract describes pervasive heterogeneity in human cancers, supporting the general point. The section ‘Non-genetic heterogeneity and cellular differentiation’ mentions differences in metabolic state among cells in normal tissues, but does not establish substantial metabolic heterogeneity in aggressive cancers. (LLM, conf=0.83)
Experimental — accuracy not yet measured - cites [7] Kondo, 2021, Single-cell resolved imaging reveals intra-tumor heterogeneity in glycolysis, transitions between metabolic states, and their regulatory mechanisms, Cell Rep. source
- Findingown data
The metabolic contrast between PHLac-sorted sub-populations is unrelated to cell cycling.
“Contrasting phenotypes persist for 4 days and are unrelated to cell cycling or glycolytic/respiratory gene expression;”
- Also stated in: § Sorting by PHLac produces contrasting but short-lived metabolic phenotypes · plain
“Population-level heterogeneity in PHLac was also unrelated to cell-cycle stage, as determined in experiments using GFP-tagged geminin transfected into MIA PaCa-2 cells and nuclear Hoechst fluorescence intensity (Figure S3A).”
Quote in the paperSubstantial claim - Also stated in: § Sorting by PHLac produces contrasting but short-lived metabolic phenotypes · plain
- Findingown data
The metabolic contrast between PHLac-sorted sub-populations is unrelated to glycolytic/respiratory gene expression.
“Contrasting phenotypes persist for 4 days and are unrelated to cell cycling or glycolytic/respiratory gene expression;”
- Also stated in: § Sorting cells by PHLac reveals transcriptionally distinct sub-populations · plain
“Strikingly, canonical glycolytic or respiratory pathways were not enriched in PHLachigh cells (“glycolysis/gluconeogenesis,” p.adj = 0.79; “oxidative phosphorylation,” p.adj = 0.79).”
Quote in the paperSubstantial claim - Also stated in: § Sorting cells by PHLac reveals transcriptionally distinct sub-populations · plain
- Findingown data
Sorting PDAC cells by lactic acid permeability (PHLac) separates cells by fermentative and respiratory rates.
“Sorting by a readout of lactic acid permeability separates cells by fermentative and respiratory rates.”
- Also stated in: § Sorting by PHLac produces contrasting but short-lived metabolic phenotypes · plain
“After 24 h culture, fermentative and respiratory rates were, respectively, 3- and 4-fold higher in PHLachigh cells after controlling for cell density (Figures 2B and 2C).”
Quote in the paperSubstantial claim - Also stated in: § Sorting by PHLac produces contrasting but short-lived metabolic phenotypes · plain
- Findingown data
MIA-PaCa-2 cells display broad heterogeneity of fermentative metabolism among PDAC cell lines.
“Using single-cell metabolic phenotyping of pancreatic ductal adenocarcinoma cells, we identify MIA-PaCa-2 as having broad heterogeneity of fermentative metabolism.”
- Also stated in: § Heterogeneity in fermentative rate varies between PDAC cell lines · plain
“Repeated measurements described the statistical distribution of fermentative rate, which was narrowest in HPAC and broadest in MIA PaCa-2 (Figure 1B).”
Quote in the paperSubstantial claim - Also stated in: § Heterogeneity in fermentative rate varies between PDAC cell lines · plain
- Findingown data
IL-6R/STAT3 knockdowns and sorting by IL-6R status verify the link between IL-6R/STAT3 and metabolic activity.
“We verify this by IL-6R/STAT3 knockdowns and sorting by IL-6R status.”
- Also stated in: § Metabolic heterogeneity is related to the state of IL-6R/STAT3 signaling · plain
“IL6R knockdown reduced fermentation rate (N = 5).”
- Also stated in: § Metabolic heterogeneity is related to the state of IL-6R/STAT3 signaling · plain
“STAT3 knockdown reduced the fermentation rate (N = 5).”
Quote in the paperSubstantial claim - Also stated in: § Metabolic heterogeneity is related to the state of IL-6R/STAT3 signaling · plain
- Findingown data
Transcriptomics links metabolically active cells with IL-6R-STAT3 signaling.
“however, transcriptomics links metabolically active cells with interleukin-6 receptor (IL-6R)-STAT3 signaling.”
- Also stated in: § Sorting cells by PHLac reveals transcriptionally distinct sub-populations · plain
“This highlighted the IL-6R/STAT3 pathway as prominently upregulated in PHLachigh cells (Figure 3E), which is consistent with the role of IL-6 in stimulating metabolism.26,27,28,29”
Quote in the paperSubstantial claim - Also stated in: § Sorting cells by PHLac reveals transcriptionally distinct sub-populations · plain
- Findingown data
The contrasting metabolic phenotypes of PHLac-sorted sub-populations persist for 4 days.
“Contrasting phenotypes persist for 4 days”
- Also stated in: § Sorting by PHLac produces contrasting but short-lived metabolic phenotypes · plain
“The metabolic contrast between PHLaclow and PHLachigh cells decreased with a time constant of ∼30 h and collapsed by day 4 (Figures S2 and 2D).”
Quote in the paperSubstantial claim - Also stated in: § Sorting by PHLac produces contrasting but short-lived metabolic phenotypes · plain
- Findingown data
STAT3 knockdown decreases IL-6R levels in MIA PaCa-2 cells.
“STAT3 knockdown decreased IL-6R levels”
Quote in the paperSubstantial claim - Findingown data
The most prominently upregulated KEGG pathway in PHLachigh cells related to cell adhesion.
“Gene set enrichment analysis (clusterProfiler) identified several KEGG pathways enriched among DEGs; the most prominently upregulated pathway in PHLachigh cells related to cell adhesion (Figures 3D and S4).”
Quote in the paperNot a substantial claim - Findingown data
Ingenuity Pathway Analysis highlighted the IL-6R/STAT3 pathway as prominently upregulated in PHLachigh cells.
“This highlighted the IL-6R/STAT3 pathway as prominently upregulated in PHLachigh cells (Figure 3E), which is consistent with the role of IL-6 in stimulating metabolism.26,27,28,29”
Quote in the paperSubstantial claim - Findingown data
A modest degree of clustering was observed among the 3 nearest neighbors in MIA PaCa-2 xenografts, which dissipated over larger distances.
“A modest degree of clustering was observed among the 3 nearest neighbors, which dissipated over larger distances, suggesting some degree of clustering in STAT3 activation (Figure 5D).”
Quote in the paperSubstantial claim - Findingown data
Positive regulation of tyrosine phosphorylation of STAT protein (but not glycolysis or respiration ontologies) had the lowest bulk expression in MIA PaCa-2.
“Moreover, “positive regulation of tyrosine phosphorylation of STAT protein” (but not glycolysis or respiration ontologies) had the lowest bulk expression in MIA PaCa-2 (Figure S6D).”
Quote in the paperNot a substantial claim - Findingown data
Sorted sub-populations return to the parental heterogeneity within a week of culture, irrespective of whether sorting was by IL-6R status or PHLac.
“sorted sub-populations return to the parental heterogeneity within a week of culture, irrespective of whether sorting was by IL-6R status or PHLac”
Quote in the paperSubstantial claim - Findingown data
IL-6Rhigh cells produced a higher fermentative rate after 24 h culture.
“and produced a higher fermentative rate (Figure 4B, NB: too few cells were collected to measure respiration).”
Quote in the paperSubstantial claim - Findingown data
Cells sorted by a proxy of elevated fermentation are enriched in IL6R mRNA.
“cells sorted by a proxy of elevated fermentation are enriched in IL6R mRNA”
Quote in the paperSubstantial claim - Findingown data
The difference in fermentative rate between 2-NBDG-high and 2-NBDG-low cells did not reach statistical significance.
“Strikingly, the difference in fermentative rate between 2-NBDG-high and 2-NBDG-low cells did not reach statistical significance, indicating that this sorting strategy is inadequate for studying heterogeneity (Figures S1B, NB: 2-NBDG loading did not inhibit glycolysis, and S1C).”
Quote in the paperSubstantial claim - Findingown data
Cells sorted by high surface expression of IL-6R produce a high fermentative rate.
“cells sorted by high surface expression of IL-6R produce a high fermentative rate”
Quote in the paperSubstantial claim - Findingreasoning
The metabolic response to napabucasin was greater in PHLachigh cells.
“Consistent with metabolically active cells being associated with IL-6R/STAT3 signaling, the metabolic response to napabucasin was greater in PHLachigh cells (Figure 4H).”
Quote in the paperSubstantial claim - Findingown data
PHLachigh cells grew 4-fold faster than PHLaclow cells.
“We found that PHLachigh cells grew 4-fold faster than PHLaclow cells, consistent with a matching between metabolic activity and resource-intense biological processes (Figure 2F).”
Quote in the paperSubstantial claim - Findingown data
Neither PHLachigh nor PHLaclow population was enriched in PDAC stemness markers.
“Additionally, neither population was enriched in PDAC stemness markers (Figures S4E and S4F).”
Quote in the paperNot a substantial claim - Findingown data
After 24 h culture, fermentative and respiratory rates were 3- and 4-fold higher in PHLachigh cells after controlling for cell density.
“After 24 h culture, fermentative and respiratory rates were, respectively, 3- and 4-fold higher in PHLachigh cells after controlling for cell density (Figures 2B and 2C).”
Quote in the paperSubstantial claim - Findingown data
IL6R knockdown narrowed the PHLac distribution.
“and the narrowed the PHLac distribution (Figure 4E).”
Quote in the paperSubstantial claim - Findingown data
STAT3 inhibition transiently stimulated respiration.
“Strikingly, the effect of STAT3 inhibition on blocking fermentation transiently stimulated respiration, which may be a compensatory response (Figure S7B).”
Quote in the paperNot a substantial claim - Findingown data
DESeq2 identified differentially expressed genes enriched in PHLachigh (2,156 genes) and PHLaclow cells (1,510 genes).
“Analysis (DESeq2) identified differentially expressed genes (DEGs; adjusted p value [p.adj] < 0.05) enriched in PHLachigh (2,156 genes) and PHLaclow cells (1,510 genes; Figure 3C).”
Quote in the paperSubstantial claim - Findingown data
IL6R knockdown decreased population-averaged fermentative rate.
“This link was verified by small interfering RNA (siRNA) knockdown (Figure 4C), which decreased population-averaged fermentative rate (Figure 4D)”
Quote in the paperSubstantial claim - Findingown data
SOCS3 knockdown increases STAT3 phosphorylation in MIA PaCa-2 cells.
“SOCS3 knockdown increased STAT3 phosphorylation”
Quote in the paperSubstantial claim - Findingown data
The metabolic contrast between PHLaclow and PHLachigh cells decreased with a time constant of ∼30 h and collapsed by day 4.
“The metabolic contrast between PHLaclow and PHLachigh cells decreased with a time constant of ∼30 h and collapsed by day 4 (Figures S2 and 2D).”
Quote in the paperSubstantial claim - Findingown data
SLC16A1 (MCT1) was not differentially expressed between PHLachigh and PHLaclow cells.
“Strikingly, the gene coding for MCT1, SLC16A1 (the activity of which is used for sorting experiments), was not differentially expressed between PHLachigh and PHLaclow cells, which exemplifies the importance of sorting according to functional readouts rather than transcript levels of specific genes or their protein products.”
Quote in the paperSubstantial claim - Findingown data
IL-6Rhigh cells had more polarized mitochondria after 24 h culture.
“After 24 h culture, IL-6Rhigh cells had more polarized mitochondria, imaged with MitoTracker (Figure 4A)”
Quote in the paperSubstantial claim - Findingown data
The transcriptional difference between PHLaclow and PHLachigh sub-populations, in terms of selected DEGs, collapsed after 10 days of culture post-sorting.
“In agreement with the short-lived contrast between metabolic phenotypes, the transcriptional difference between PHLaclow and PHLachigh sub-populations, in terms of selected DEGs, collapsed after 10 days of culture post-sorting (Figure S5).”
Quote in the paperSubstantial claim - Findingown data
STAT3 knockdown decreases SOCS3 levels in MIA PaCa-2 cells.
“STAT3 knockdown decreases SOCS3 levels”
Quote in the paperSubstantial claim - Findingown data
PANC-1 sub-populations sorted by PHLac showed small and non-significant differences in gene expression of these genes.
“In contrast to the stark transcriptional contrasts in MIA PaCa-2 cells, PANC-1 sub-populations sorted by PHLac showed small and non-significant differences in gene expression of these genes (Figure 3F).”
Quote in the paperSubstantial claim - Findingown data
The emergent PHLac-sorted sub-populations did not differ in resting pHi.
“Although the sorting process was based on measuring pHi responses to a lactate maneuver, the emergent sub-population did not differ in resting pHi (Figure 2E).”
Quote in the paperSubstantial claim - Findingown data
Sorting by PHLac was still able to separate cells by fermentative rate after cell-cycle synchronization with hydroxyurea.
“Moreover, sorting by PHLac was still able to separate cells by fermentative rate after cell-cycle synchronization with hydroxyurea, which arrests cells in G1/S phase and prevents entry to G2 (Figures S3B and S3D).”
Quote in the paperSubstantial claim - Findingown data
These pathways did not include the cell cycle.
“Consistent with our earlier findings, these pathways did not include the cell cycle.”
Quote in the paperNot a substantial claim - Findingown data
Population-level heterogeneity in PHLac was unrelated to cell-cycle stage.
“Population-level heterogeneity in PHLac was also unrelated to cell-cycle stage, as determined in experiments using GFP-tagged geminin transfected into MIA PaCa-2 cells and nuclear Hoechst fluorescence intensity (Figure S3A).”
Quote in the paperSubstantial claim - Findingown data
Genes enriched in PHLachigh cells tended to have low bulk expression levels in MIA PaCa-2 cells compared to other PDAC lines.
“Genes enriched in PHLachigh cells tended to have low bulk expression levels in MIA PaCa-2 cells compared to other PDAC lines (Figures S6A and S6B).”
Quote in the paperSubstantial claim - Findingown data
Cells with the highest PHLac produced the most prominent alkaline transients, distinguishing them from PHLaclow cells.
“Cells with the highest PHLac (PHLachigh) produced the most prominent alkaline transients, distinguishing them from PHLaclow cells (Figure 1G).”
Quote in the paperSubstantial claim - Findingown data
Acute treatment with napabucasin (1 μM) reduced STAT3 phosphorylation.
“Knockdown ablated STAT3 expression, and acute treatment with napabucasin (1 μM) reduced STAT3 phosphorylation; both reduced fermentative rate (Figures 4F, 4G, and S7A).”
Quote in the paperSubstantial claim - Findingown data
The most prominent DEGs were assigned a negative correlation coefficient, i.e., had the lowest bulk expression in MIA PaCa-2 cells.
“This analysis showed that the most prominent DEGs were assigned a negative correlation coefficient, i.e., had the lowest bulk expression in MIA PaCa-2 cells (Figure S6C).”
Quote in the paperSubstantial claim - Findingown data
Among the DEGs, there was strong upregulation of the IL6R alpha receptor and its dimerization partner IL6ST.
“Among the DEGs, we identified a strong upregulation of the IL6R alpha receptor and its dimerization partner IL6ST.”
Quote in the paperSubstantial claim - Findingown data
Canonical glycolytic or respiratory pathways were not enriched in PHLachigh cells.
“Strikingly, canonical glycolytic or respiratory pathways were not enriched in PHLachigh cells (“glycolysis/gluconeogenesis,” p.adj = 0.79; “oxidative phosphorylation,” p.adj = 0.79).”
Quote in the paperSubstantial claim - Findingown data
The metabolic contrast between IL-6Rlow and IL-6Rhigh cells disappeared after a week of culture.
“The metabolic contrast between IL-6Rlow and IL-6Rhigh cells disappeared after a week of culture, in agreement with observations from PHLac-sorted cells.”
Quote in the paperSubstantial claim - Findingown data
Metabolically active PHLachigh cells are associated with activated IL-6R/STAT3 signaling.
“we found several lines of evidence associating metabolically active (PHLachigh) cells with activated IL-6R/STAT3 signaling”
Quote in the paperSubstantial claim - Findingown data
The metabolically activated sub-population has faster growth post-sorting.
“the metabolically activated sub-population had faster growth post-sorting”
Quote in the paperSubstantial claim - Findingown data
Genes differentially expressed in sorted sub-populations progress toward equal expression.
“genes that were differentially expressed in sorted sub-populations progressed toward equal expression”
Quote in the paperSubstantial claim - Findingown data
PHLac-sorted sub-populations show no enrichment in cell-cycle markers.
“there was no enrichment in cell-cycle markers”
Quote in the paperSubstantial claim - Findingown data
In a panel of PDAC cell lines, MIA PaCa-2 has the widest distribution of fermentative rate.
“identifying MIA PaCa-2 as having the widest distribution”
Quote in the paperSubstantial claim - Findingown data
SOCS3 knockdown accelerates fermentative rate in MIA PaCa-2 cells.
“SOCS3 knockdown accelerated fermentative and respiratory rates”
Quote in the paperSubstantial claim - Findingreasoning
Intracellular lactate measured with a genetically encoded sensor had inadequate power to resolve sub-populations.
“intracellular [lactate] measured with a genetically encoded sensor was associated with inadequate power to resolve sub-populations”
Quote in the paperSubstantial claim - Findingown data
STAT3 knockdown reduces fermentative rate.
“IL-6R and STAT3 knockdown as well as STAT3 inhibition (napabucasin) reduced fermentative rate”
Quote in the paperSubstantial claim - Findingown data
MIA PaCa-2 cells produce IL-6 in a STAT3-activated manner.
“which is produced by MIA PaCa-2 cells in a STAT3-activated manner”
Quote in the paperSubstantial claim - Findingown data
When extrapolated to the point of sorting, the difference in fermentative and respiratory rates between sub-populations was an order of magnitude.
“When extrapolated to the point of sorting, the difference in fermentative and respiratory rates between sub-populations was an order of magnitude.”
Quote in the paperSubstantial claim - Findingown data
In wild-type MIA PaCa-2 cells, CHC produces a modest left shift in the pHi distribution, indicating that only a minority of cells are highly metabolically active.
“In wild-type cells, CHC produced a modest left shift in the pHi distribution, indicating that only a minority of cells are highly metabolically active.”
Quote in the paperSubstantial claim - Findingown data
PHLac-sorted sub-populations show no significant enrichment in stemness markers.
“Analysis of transcriptomic data from PHLac-sorted cells indicated no significant enrichment in stemness markers in either sub-population.”
Quote in the paperSubstantial claim - Findingown data
SOCS3 knockdown accelerates respiratory rate in MIA PaCa-2 cells.
“SOCS3 knockdown accelerated fermentative and respiratory rates”
Quote in the paperSubstantial claim - Findingown data
In SOCS3 knockout cells, CHC produces a profound left shift in the pHi distribution, indicating that the majority of cells responded strongly to MCT inhibition.
“In SOCS3 knockout cells, however, the shift was very profound, indicating that the majority of cells responded strongly to MCT inhibition”
Quote in the paperSubstantial claim - Findingown data
STAT3 inhibition with napabucasin reduces fermentative rate.
“IL-6R and STAT3 knockdown as well as STAT3 inhibition (napabucasin) reduced fermentative rate”
Quote in the paperSubstantial claim - Findingown data
Cells sorted by metabolic proxies are not enriched in genes of canonical glycolytic and respiratory pathways.
“cells sorted by metabolic proxies were not enriched in genes of canonical glycolytic and respiratory pathways”
Quote in the paperSubstantial claim - Findingown data
Similar metabolic contrast between sub-populations is obtained after synchronizing the cell cycle.
“Similar metabolic contrast between sub-populations was obtained after synchronizing the cell cycle.”
Quote in the paperSubstantial claim - Findingown data
MIA PaCa-2 cells have relatively low levels of the DEGs identified in sub-populations compared with other PDAC cell lines.
“MIA PaCa-2 cells differed from other PDAC cell lines in having relatively low levels of the DEGs identified in sub-populations”
Quote in the paperSubstantial claim - Findingown data
The metabolic contrast between PHLac-sorted sub-populations decays with a time constant of ∼30 h.
“This metabolic contrast decayed with a time constant of ∼30 h”
Quote in the paperSubstantial claim - Findingown data
STAT3 is at the center of gene responses activated in PHLachigh cells.
“pathway analysis of DEGs indicated that STAT3 was at the center of gene responses activated in PHLachigh cells”
Quote in the paperSubstantial claim - Findingown data
PHLac does not differ in cells in different stages of the cycle, as gated by nuclear Hoechst fluorescence or geminin signal.
“PHLac was no different in cells in different stages of the cycle, as gated by nuclear Hoechst fluorescence or geminin signal.”
Quote in the paperSubstantial claim - Findingown data
IL-6R knockdown narrows the PHLac distribution by eliminating cells with the highest metabolic activation.
“IL-6R knockdown also narrowed the PHLac distribution by eliminating cells with the highest metabolic activation”
Quote in the paperSubstantial claim - Findingown data
SOCS3 knockdown increases the abundance of STAT3-positive nuclei in MIA PaCa-2 cells.
“the abundance of STAT3-positive nuclei imaged by immunofluorescence”
Quote in the paperSubstantial claim - Findingown data
IL6R is the most significantly overexpressed gene in metabolically active cells.
“Transcriptomics identified IL6R as the most significantly overexpressed gene in metabolically active cells”
Quote in the paperSubstantial claim - Findingown data
The sub-population with a high fermentative rate also had a high respiratory rate.
“the sub-population with a high fermentative rate also had a high respiratory rate”
Quote in the paperSubstantial claim - Findingown data
The inhibitory effect of napabucasin on fermentative rate transiently stimulates oxygen consumption.
“the inhibitory effect of napabucasin on fermentative rate transiently stimulated oxygen consumption”
Quote in the paperSubstantial claim - Findingnone given
Sub-populations of cells with low fermentative rates overexpress GJA1, the gene coding for Cx43.
“sub-populations of cells with low fermentative rates also overexpress GJA1, the gene coding for Cx43”
Quote in the paperSubstantial claim - Findingown data
IL-6R knockdown reduces fermentative rate.
“IL-6R and STAT3 knockdown as well as STAT3 inhibition (napabucasin) reduced fermentative rate”
Quote in the paperSubstantial claim - Findingown data
SOCS3 knockout cells have higher STAT phosphorylation.
“confirmed that these have higher STAT phosphorylation”
Quote in the paperSubstantial claim - Findingown data
Sorting by intracellular glucose levels did not produce sufficient metabolic contrast between sub-populations.
“Sorting by intracellular glucose levels, inferred using a fluorescent derivative, did not produce sufficient metabolic contrast between sub-populations.”
Quote in the paperSubstantial claim - Findingown data
MIA PaCa-2 cells show the most substantial variation in the nuclear/cytoplasmic STAT3 ratio among PDAC lines.
“MIA PaCa-2 cells showed the most substantial variation in the nuclear/cytoplasmic STAT3 ratio, an indicator of STAT3 activation”
Quote in the paperNot a substantial claim - Findingown data
Within-population variation in PHLac among PDAC cell lines follows the same rank order as variation in fermentative rate.
“within-population variation in PHLac among PDAC cell lines followed the same rank order as variation in fermentative rate”
Quote in the paperSubstantial claim - Interpretationreasoning
Among cells manifesting wide metabolic heterogeneity, dynamic IL-6R/STAT3 signaling may allow cell cohorts to take turns in progressing energy-intense processes without depleting shared resources.
“Among cells manifesting wide metabolic heterogeneity, dynamic IL-6R/STAT3 signaling may allow cell cohorts to take turns in progressing energy-intense processes without depleting shared resources.”
Quote in the paperSubstantial claim - Premisereasoning
Steady-state concentrations cannot predict metabolite fluxes.
“A limitation of this approach is that steady-state concentrations cannot predict metabolite fluxes.”
Quote in the paperSubstantial claim - Premisereasoning
Single-cell methods that measure gene expression may not adequately separate sub-populations by metabolic flux.
“Since metabolism is an ensemble process that depends on a network of proteins and their kinetic and thermodynamic constraints, single-cell methods that measure gene expression may not adequately separate sub-populations by metabolic flux.”
Quote in the paperSubstantial claim - Interpretationreasoning
The rapid onset of the napabucasin effect suggests that STAT3 controls fermentation via a non-transcriptional mechanism.
“The rapid onset of the napabucasin effect suggests that STAT3 controls fermentation via a non-transcriptional mechanism.”
Quote in the paperSubstantial claim - Interpretationreasoning
Metabolically active MIA PaCa-2 cells may represent a small subset of the entire population, which otherwise expresses low levels of the highlighted DEGs.
“This suggests that metabolically active MIA PaCa-2 cells may represent a small subset of the entire population, which otherwise expresses low levels of the highlighted DEGs.”
Quote in the paperSubstantial claim - Interpretationown data
The signal-to-noise ratio of Laconic is inadequate to accurately separate cells by metabolic status.
“This signal-to-noise ratio is inadequate to accurately separate cells by metabolic status.”
Quote in the paperSubstantial claim - Interpretationown data
The short-lived nature of the metabolic contrast argues against an underlying heritable factor.
“The short-lived nature of the metabolic contrast argues against an underlying heritable factor.”
Quote in the paperSubstantial claim - Interpretationown data
These data are consistent with measurements of fermentative rate.
“These data are consistent with measurements of fermentative rate.”
Quote in the paperNot a substantial claim - Premisereasoning
Cells with the highest PHLac can be identified flow cytometrically from the large intracellular alkalinization that is triggered when lactate is rapidly driven out of cells down an experimentally controlled gradient.
“Cells with the highest PHLac can be identified flow cytometrically from the large intracellular alkalinization that is triggered when lactate is rapidly driven out of cells down an experimentally controlled gradient.”
Quote in the paperSubstantial claim - Interpretationown data
The phenotypic differences between PHLachigh and PHLaclow cells could not have been predicted from transcripts related to fermentation and respiration.
“This finding indicates that the phenotypic differences between PHLachigh and PHLaclow cells could not have been predicted from transcripts related to fermentation and respiration.”
Quote in the paperSubstantial claim - Interpretationreasoning
There is no compelling evidence in MIA PaCa-2 cells that the two sub-populations have hardwired, distinct transduction mechanisms.
“for which there is no compelling evidence in MIA PaCa-2 cells”
Quote in the paperSubstantial claim - Interpretationown data
The cell's ability to conduct an efflux of lactic acid is a strong predictor of fermentative as well as respiratory rate.
“Thus, the cell’s ability to conduct an efflux of lactic acid is a strong predictor of fermentative as well as respiratory rate.”
Quote in the paperSubstantial claim - Premisereasoning
Single-point measurements of the abundance of metabolic intermediates cannot quantify flux.
“For the same reasoning, single-point measurements of the abundance of metabolic intermediates cannot quantify flux.”
Quote in the paperSubstantial claim - Study design and conductown data
Cell line authentication excluded contamination as a potential cause of variation.
“Cell line authentication (Table S1) excluded contamination as a potential cause of variation.”
Quote in the paperSubstantial claim - Interpretationreasoning
Metabolic heterogeneity in MIA PaCa-2 cells appears to arise from a dynamic equilibrium between cells of high and low metabolic rates.
“Thus, metabolic heterogeneity in MIA PaCa-2 cells appears to arise from a dynamic equilibrium between cells of high and low metabolic rates.”
Quote in the paperSubstantial claim - Interpretationown data
The metabolic contrast cannot be explained in terms of steady-state pHi or differences in pHi regulators.
“This means that the metabolic contrast cannot be explained in terms of steady-state pHi or differences in pHi regulators.”
Quote in the paperSubstantial claim - Interpretationown data
The clustering of STAT3 activation in MIA PaCa-2 xenografts suggests some degree of clustering in STAT3 activation.
“A modest degree of clustering was observed among the 3 nearest neighbors, which dissipated over larger distances, suggesting some degree of clustering in STAT3 activation (Figure 5D).”
Quote in the paperSubstantial claim - Interpretationown data
The independent observations that sorting by PHLac identified IL-6R positivity and sorting by IL-6R identified metabolically active cells confirms a causal relationship between IL-6R and metabolic heterogeneity.
“The independent observations that sorting by a metabolic proxy (PHLac) identified IL-6R positivity and sorting by IL-6R identified metabolically active cells confirms a causal relationship between IL-6R and metabolic heterogeneity.”
Quote in the paperSubstantial claim - Interpretationreasoning
Extrapolating the time courses to the point of sorting indicates that the initial metabolic contrast may be an order of magnitude.
“However, extrapolating the time courses in Figure 2D to the point of sorting indicates that the initial metabolic contrast may be an order of magnitude.”
Quote in the paperNot a substantial claim - Interpretationown data
The return of sorted sub-populations to parental heterogeneity suggests a dynamic equilibrium between PHLachigh/IL-6Rhigh and PHLaclow/IL-6Rlow cells.
“This finding suggests a dynamic equilibrium between PHLachigh/IL-6Rhigh and PHLaclow/IL-6Rlow cells”
Quote in the paperSubstantial claim - Interpretationreasoning
The observation that PHLac-sorted sub-populations returned symmetrically to a mid-point metabolic phenotype within 4 days indicates that any growth-accelerating trait in PHLachigh cells is transient.
“However, the observation that PHLac-sorted sub-populations returned symmetrically to a mid-point metabolic phenotype within 4 days indicates that any growth-accelerating trait in PHLachigh cells is transient; otherwise, these cells would have dominated the population.”
Quote in the paperSubstantial claim - Interpretationown data
Metabolic differences are not strictly coupled to specific phases of the cell cycle.
“These findings suggest that metabolic differences are not strictly coupled to specific phases of the cell cycle.”
Quote in the paperSubstantial claim - Interpretationown data
SOCS3 exerts an inhibitory effect on fermentative rate via pSTAT3.
“Our results are consistent with SOCS3 overseeing an inhibitory effect on fermentative rate via pSTAT3.”
Quote in the paperSubstantial claim - Interpretationreasoning
Cancers with low IL-6R/STAT3 expression and delayed SOCS3 feedback may alternate metabolic activity similarly to MIA PaCa-2.
“Cancers that have low IL-6R/STAT3 expression and delayed SOCS3 feedback may alternate metabolic activity in a manner similar to MIA PaCa-2.”
Quote in the paperSubstantial claim - Interpretationown data
The lack of enrichment in canonical glycolytic and respiratory pathway genes highlights limitations of making inferences on metabolic activity from gene expression.
“which highlights the limitations of making inferences on metabolic activity from gene expression”
Quote in the paperSubstantial claim - Interpretationreasoning
At least a component of metabolic control is exercised post-translationally or thermodynamically.
“at least a component of metabolic control is exercised post-translationally or thermodynamically”
Quote in the paperSubstantial claim - Interpretationreasoning
A necessary condition for IL-6R/STAT3-driven metabolic heterogeneity is relatively low bulk expression of elements of this pathway, allowing periods of overexpression.
“we propose that a necessary condition is the relatively low expression of elements of this pathway at the bulk level because this allows periods of overexpression”
Quote in the paperSubstantial claim - Interpretationown data
The high fermentative and respiratory rates indicate a general activation of energy-harnessing metabolism rather than a switchover.
“indicating a general activation of energy-harnessing metabolism rather than a switchover”
Quote in the paperSubstantial claim - Interpretationown data
STAT3 inhibition can selectively target fermentative metabolism rather than cause a general rundown of metabolism.
“which argues that STAT3 inhibition can selectively target fermentative metabolism rather than cause a general rundown of metabolism”
Quote in the paperSubstantial claim - Interpretationreasoning
The state of IL-6/STAT3/SOCS signaling would manifest as dynamic, population-level heterogeneity, even among genetically identical cells.
“The state of IL-6/STAT3/SOCS signaling would manifest as dynamic, population-level heterogeneity, even among genetically identical cells.”
Quote in the paperNot a substantial claim - Interpretationown data
The metabolic contrast between PHLac-sorted sub-populations is not because of capturing cells at different stages of their cycle.
“indicating that the metabolic contrast was not because of capturing cells at different stages of their cycle”
Quote in the paperSubstantial claim - Interpretationreasoning
The IL-6R/STAT3/SOCS3 cascade represents a delayed negative feedback circuit.
“the IL-6R/STAT3/SOCS3 cascade represents a delayed negative feedback circuit”
Quote in the paperSubstantial claim- Rests on an assumption: SOCS3 transcription and translation incur a time delay.
- Interpretationreasoning
The delayed negative feedback circuit explains why sorting MIA PaCa-2 cells by a proxy of fermentative rate produced only short-lived contrast in metabolic activity.
“This would also explain why sorting MIA PaCa-2 cells by a proxy of fermentative rate metabolism produced only short-lived contrast in metabolic activity between sub-populations separated at any particular point in time.”
Quote in the paperSubstantial claim - Interpretationreasoning
PHLac measurements are a surrogate of fermentative flux.
“we reasoned that measurements of PHLac are a surrogate of fermentative flux”
Quote in the paperSubstantial claim- Rests on an assumption: Glycolytic lactic acid production must be in balance with its transmembrane excretion.
- Rests on an assumption: Membrane permeability properties are less labile than metabolite concentrations and relate more directly to actual flux.
- Interpretationown data
Endogenous IL-6 secretion likely saturates the minority of IL6R-expressing cells.
“Endogenous IL-6 secretion is likely to saturate the minority of IL6R-expressing cells”
Quote in the paperSubstantial claim - Interpretationreasoning
Cell lines with high population-averaged expression of IL-6R/STAT3/SOCS3 genes may reach saturation that prevents dynamic shifts to a lower metabolic state.
“lines with high population-averaged expression of the aforementioned genes may reach saturation that prevents dynamic shifts to a lower metabolic state”
Quote in the paperSubstantial claim - Premisecitation
SOCS3 inhibits signaling between IL-6R and STAT3.
“Another target is SOCS3, which inhibits the signaling between IL-6R and STAT3.”
Quote in the paperSubstantial claim0 of 1 sources checked- cites [42] Zhang, 2006, IL-6 signaling via the STAT3/SOCS3 pathway: functional analysis of the conserved STAT3 N-domain, Mol. Cell. Biochem. source
- Interpretationreasoning
The SOCS3-dependent loop incurs a delay due to transcription, translation, trafficking out of the nucleus, and inhibition of JAKs before it reduces STAT3 phosphorylation.
“The SOCS3-dependent loop incurs a delay due to transcription, translation, trafficking out of the nucleus, and inhibition of JAKs before it reduces STAT3 phosphorylation.”
Quote in the paperSubstantial claim- Rests on an assumption: SOCS3 transcription and translation incur a time delay.
- Interpretationown data
The symmetrical return of high and low sub-populations toward a mid-point metabolic rate suggests a dynamic equilibrium between cells differing in metabolic state.
“the symmetrical return of the high and low sub-populations toward a mid-point metabolic rate suggests a dynamic equilibrium between cells differing in metabolic state”
Quote in the paperSubstantial claim - Study design and conductnone given
The link between metabolic rate, PHLac, and IL-6R is validated herein.
“Although the link between metabolic rate, PHLac, and IL-6R is validated herein”
Quote in the paperSubstantial claim - Interpretationown data
The decay of metabolic contrast argues against a hardwired metabolic state of PHLac-sorted sub-populations.
“which argues against a hardwired metabolic state of PHLac-sorted sub-populations”
Quote in the paperSubstantial claim - Study design and conductown data
Using PHLac for sorting cells is valid, confirmed by the metabolic contrast in the emergent sub-populations.
“The validity of using PHLac for sorting cells was confirmed by the metabolic contrast in the emergent sub-populations.”
Quote in the paperSubstantial claim
- Classified as probably not a substantial claim. 41
- May combine two claims. 28
- The quote only partly states this claim. 2
Probably not a substantial claim: may not pass S3 (load-bearing).
PremisecitationKRAS mutations lead to sustained activation of MAPK and PI3K-mTOR pathways.
“KRAS mutations lead to sustained activation of MAPK and PI3K-mTOR pathways16,17”
Quote in the paperNot a substantial claim2 of 2 sources checked- cites [16] Ying, 2012, Oncogenic Kras maintains pancreatic tumors through regulation of anabolic glucose metabolism, Cell source
- cites [17] Santana-Codina, 2018, Oncogenic KRAS supports pancreatic cancer through regulation of nucleotide synthesis, Nat. Commun. source
The Results section, “The MAPK-MYC-RPIA pathway mediates KRAS resistance” (page unavailable), supports KRAS-dependent MAPK signaling: KRAS depletion decreased ERK phosphorylation. It does not establish sustained PI3K-mTOR activation by KRAS mutations; it reports only a minor effect of KRAS depletion on AKT and describes PI3K activation as a compensatory response to MEK inhibition. (LLM, conf=0.86)
Experimental — accuracy not yet measured
Probably not a substantial claim: may not pass S3 (load-bearing).
PremisecitationSingle-cell methods applied to cancer cells have described heterogeneity in transcriptomics, epigenomics, metabolomics, and proteomics.
“Indeed, single-cell methods applied to cancer cells have described heterogeneity in terms of transcriptomics, epigenomics, metabolomics, and proteomics,5,6”
Quote in the paperNot a substantial claim1 of 2 sources checked- cites [5] Dagogo-Jack, 2018, Tumour heterogeneity and resistance to cancer therapies, Nat. Rev. Clin. Oncol. source
- cites [6] Lawson, 2018, Tumour heterogeneity and metastasis at single-cell resolution, Nat. Cell Biol. source
The review describes transcriptomic, epigenetic and proteomic differences between cancer cells (opening section, page unavailable), and its diagnostics section reports heterogeneity detected by single-cell RNA-seq and mass cytometry. It does not describe single-cell metabolomic heterogeneity in cancer cells; searches for “metabolomics” and “metabolite” found no supporting passage. (LLM, conf=0.86)
Experimental — accuracy not yet measured
Classified as probably not a substantial claim.
PremisecitationBulk fermentative and respiratory rates in primary tumors are lower than previously postulated.
“Intriguingly, a recent study determined that “bulk” fermentative and respiratory rates in primary tumors are lower than previously postulated,4”
Quote in the paperSubstantial claim1 of 1 sources checked- cites [4] Bartman, 2023, Slow TCA flux and ATP production in primary solid tumours but not metastases, Nature source
The Abstract and Discussion report suppressed TCA flux in primary solid tumour models and lower overall ATP production than the commonly assumed hypermetabolic state. But ‘Tumours make energy slowly’ reports glycolytic flux similar to or higher than that of corresponding healthy tissues; the paper does not establish that fermentative rates are lower than previously postulated. The findings concern the primary tumour models studied, not primary tumours generally. (LLM, conf=0.85)
Experimental — accuracy not yet measured
Classified as probably not a substantial claim. May combine two claims.
PremisecitationThe cell cycle is an example of a rhythmic signaling cascade, but coupling metabolism to it would constrain metabolic activation to specific stages of the cell cycle.
“One example is the cell cycle,8 but this arrangement would constrain metabolic activation to specific stages of the cell cycle, which may not necessarily deliver the best matching between metabolic demand and supply, particularly during longer phases of the cycle.”
Quote in the paperSubstantial claim1 of 1 sources checked- cites [8] Takhaveev, 2023, Temporal segregation of biosynthetic processes is responsible for metabolic oscillations during the budding yeast cell cycle, Nat. Metab. source
Probably not a substantial claim: may not pass S3 (load-bearing).
PremisecitationTP53 mutations disinhibit glucose metabolism.
“mutations in TP53 disinhibit glucose metabolism.18,19”
Quote in the paperNot a substantial claim2 of 2 sources checked- cites [18] Zhang, 2013, Tumour-associated mutant p53 drives the Warburg effect, Nat. Commun. source
- cites [19] Kondoh, 2005, Glycolytic enzymes can modulate cellular life span, Cancer Res. source
In “Immortalization Correlates with Effects on Glycolysis” (page not available), mouse embryonic fibroblasts expressing dominant-negative p53 showed increased glucose detritiation and lactate production, while induced wild-type p53 reduced PGM activity. This supports the direction of the claim, but the experiments do not establish that TP53 mutations generally disinhibit glucose metabolism. (LLM, conf=0.83)
Experimental — accuracy not yet measured
May combine two claims.
PremisecitationProliferation is costly in terms of energy and substrates, and maintaining a persistently raised metabolic rate would be counter-productive if it caused the tumor to become depleted of resources and overloaded with waste.
“However, proliferation is costly in terms of energy and substrates, and maintaining a persistently raised metabolic rate would be counter-productive if it caused the tumor to become depleted of resources and overloaded with waste.3”
Quote in the paperSubstantial claim1 of 1 sources checked- cites [3] Kamphorst, 2015, Human pancreatic cancer tumors are nutrient poor and tumor cells actively scavenge extracellular protein, Cancer Res. source
The Introduction says tumor growth has high metabolic demands and that poor perfusion may limit oxygen and nutrients. The Discussion describes PDAC tumors as nutrient-poor, but the paper does not say that a persistently raised metabolic rate would be counterproductive or that tumors become overloaded with waste. Page numbers are not available in our copy. (LLM, conf=0.85)
Experimental — accuracy not yet measured
May combine two claims.
PremisecitationPancreatic ductal adenocarcinoma (PDAC) lines were chosen because cancers of the pancreas are characterized by rapid progression, invasiveness, and elevated fermentative metabolism.
“Pancreatic ductal adenocarcinoma (PDAC) lines were chosen for our study because cancers of the pancreas are characterized by rapid progression,9,10 invasiveness,11,12 and elevated fermentative metabolism.13,14,15,16”
Quote in the paperSubstantial claim6 of 8 sources checked- cites [9] Nishida, 1999, Doubling time of serum CA 19-9 in the clinical course of patients with pancreatic cancer and its significant association with prognosis, J. Surg. Oncol. source
- cites [10] Yu, 2015, Time to progression of pancreatic ductal adenocarcinoma from low-to-high tumour stages, Gut source
- cites [11] Kleeff, 2016, Pancreatic cancer, Nat. Rev. Dis. Prim. source
- cites [12] Nie, 2020, COX6B2 drives metabolic reprogramming toward oxidative phosphorylation to promote metastasis in pancreatic ductal cancer cells, Oncogenesis source
The Introduction describes PDAC as highly aggressive, with patients often dying within months, and attributes its aggressiveness partly to high metastatic potential. It reports both Warburg and anti-Warburg metabolism in PDAC, however, so it does not support characterizing pancreatic cancers generally by elevated fermentative metabolism. (LLM, conf=0.88)
Experimental — accuracy not yet measured - cites [13] Lunt, 2011, Aerobic glycolysis: meeting the metabolic requirements of cell proliferation, Annu. Rev. Cell Dev. Biol. source
The Introduction (page unavailable) says cancer cells often consume more glucose and produce high levels of lactate, supporting the elevated fermentative-metabolism part of the sentence. It does not identify pancreatic cancer or PDAC lines specifically. The progression and invasiveness claims are attached to other citations. (LLM, conf=0.83)
Experimental — accuracy not yet measured - cites [14] Wang, 2022, Prognostic value of glycolysis markers in pancreatic cancer: A systematic review and meta-analysis, Front. Oncol. source
- cites [15] Yang, 2020, The enhancement of glycolysis regulates pancreatic cancer metastasis, Cell. Mol. Life Sci. source
- cites [16] Ying, 2012, Oncogenic Kras maintains pancreatic tumors through regulation of anabolic glucose metabolism, Cell source
May combine two claims.
FindingcitationCx43 levels are low in MIA PaCa-2 primary tumors but increase in areas of invasion and metastasis.
“we showed that Cx43 levels are low in MIA PaCa-2 primary tumors but increase in areas of invasion and metastasis”
Quote in the paperSubstantial claim1 of 1 sources checked- cites [48] Dovmark, 2017, Connexin-43 channels are a pathway for discharging lactate from glycolytic pancreatic ductal adenocarcinoma cells, Oncogene source
The Results section reports no Cx43 immunoreactivity in the MIA PaCa-2 primary tumor and markedly increased staining in invading cells. It also says Cx43 staining was weak or absent in most lung metastases, although some metastatic lesions were positive; the claim overgeneralizes the metastatic finding. (LLM, conf=0.88)
Experimental — accuracy not yet measured
May combine two claims.
PremisecitationpSTAT3 induces transcription of multiple genes, including IL6 and IL6R, which amplifies IL-6/STAT3 signaling.
“pSTAT3 induces the transcription of multiple genes, including IL6 and IL6R, which has the effect of amplifying IL-6/STAT3 signaling.”
Quote in the paperSubstantial claim1 of 1 sources checked- cites [41] Chang, 2013, The IL-6/JAK/Stat3 feed-forward loop drives tumorigenesis and metastasis, Neoplasia source
In “Stat3–IL-6 Feed-Forward Loop Regulates Mammary Tumorigenesis” (page not specified), the paper reports Stat3 binding to the IL-6 promoter and proposes a transcriptional feed-forward loop. The Discussion (page not specified) reports that disrupting Stat3 reduces IL-6 expression. The copy does not show that pStat3 induces IL6R transcription; it discusses IL-6R as a receptor in the signaling pathway. (LLM, conf=0.87)
Experimental — accuracy not yet measured
May combine two claims.
InterpretationcitationDesynchronized dynamics would ration resources evenly, while maintaining a relatively normal bulk metabolic rate, as shown in primary tumors.
“Desynchronized dynamics would ration resources evenly, while maintaining a relatively “normal” bulk metabolic rate, as shown in primary tumors.”
Quote in the paperSubstantial claim1 of 1 sources checked- cites [6] Lawson, 2018, Tumour heterogeneity and metastasis at single-cell resolution, Nat. Cell Biol. source
The Non-genetic heterogeneity and cellular differentiation section (page unavailable) mentions differences in cellular metabolic state, but does not discuss desynchronized dynamics, even resource allocation, or a normal bulk metabolic rate in primary tumours. Searches for those terms and related concepts found no passage addressing the attributed claim. (LLM, conf=0.76)
Experimental — accuracy not yet measured
Probably not a substantial claim: may not pass S3 (load-bearing). May combine two claims.
PremisecitationIL-6Rα expression is normally associated with hepatocytes and leukocytes but has also been described in cancer cells, including PDAC.
“IL-6Rα expression is normally associated with hepatocytes and leukocytes but has also been described in cancer cells, including PDAC.”
Quote in the paperNot a substantial claim1 of 1 sources checked- cites [40] Heinrich, 2003, Principles of interleukin (IL)-6-type cytokine signalling and its regulation, Biochem. J. source
The Introduction (page not available in our copy) says α-receptor expression is more restricted than gp130 expression, supporting the claim’s general point about limited distribution. It does not identify hepatocytes and leukocytes as the usual IL-6Rα-expressing cells. The PI3K section discusses IL-6 signalling in several cancer cell types, but does not establish IL-6Rα expression in those cells or mention PDAC. (LLM, conf=0.82)
Experimental — accuracy not yet measured
Classified as probably not a substantial claim.
PremisecitationThe cytokine IL-6 triggers multiple downstream responses, including metabolic regulation.
“The cytokine IL-6 triggers multiple downstream responses, including metabolic regulation.”
Quote in the paperSubstantial claim1 of 1 sources checked- cites [40] Heinrich, 2003, Principles of interleukin (IL)-6-type cytokine signalling and its regulation, Biochem. J. source
The Introduction (page not provided) describes multiple IL-6-type cytokine responses and signalling pathways, and the PI3K section specifically discusses effects of IL-6. The passages do not establish metabolic regulation as one of those responses; a search for that term and for glucose metabolism found no supporting passage. (LLM, conf=0.85)
Experimental — accuracy not yet measured
May combine two claims.
PremisecitationPancreatic cancers generate substantial lactic acid fluxes, linked to mutations that promote hyper-proliferation.
“pancreatic cancers generate substantial lactic acid fluxes, linked to mutations that promote hyper-proliferation”
Quote in the paperSubstantial claim4 of 4 sources checked- cites [16] Ying, 2012, Oncogenic Kras maintains pancreatic tumors through regulation of anabolic glucose metabolism, Cell source
- cites [17] Santana-Codina, 2018, Oncogenic KRAS supports pancreatic cancer through regulation of nucleotide synthesis, Nat. Commun. source
The Results section ('Kras dependency correlates with differential metabolic rewiring'; page unavailable) reports that KRAS depletion reduced glycolytic intermediates and extracellular acidification in human pancreatic cancer cell lines, supporting a link between an oncogenic mutation and altered metabolism. The Methods ('Metabolism studies'; page unavailable) describe measuring lactate production, but the retrieved passages do not establish that pancreatic cancers generate substantial lactic acid fluxes or directly link such fluxes to hyper-proliferation. (LLM, conf=0.82)
Experimental — accuracy not yet measured - cites [18] Zhang, 2013, Tumour-associated mutant p53 drives the Warburg effect, Nat. Commun. source
The Results section ('Mutp53 stimulates the Warburg Effect in vitro and in vivo'; page unavailable) reports increased lactate production in mutant-p53 lung and breast cancer cells and links mutant p53 to the Warburg effect. It does not establish substantial lactic acid fluxes in pancreatic cancers specifically, or show that those fluxes are linked to mutations promoting hyper-proliferation there. The only pancreatic-cancer mention found is in a reference title. (LLM, conf=0.88)
Experimental — accuracy not yet measured - cites [19] Kondoh, 2005, Glycolytic enzymes can modulate cellular life span, Cancer Res. source
The Introduction (page unavailable) links enhanced aerobic glycolysis in cancer with expression of oncogenes, and the ‘Immortalization Correlates with Effects on Glycolysis’ section reports increased lactate production relative to glucose consumption in engineered mouse cells. The paper does not establish substantial lactic acid flux specifically in pancreatic cancers or link that flux to mutations promoting hyper-proliferation. (LLM, conf=0.83)
Experimental — accuracy not yet measured
Probably not a substantial claim: may not pass S3 (load-bearing). May combine two claims.
PremisecitationIL-6 signaling facilitates the progression of pre-neoplastic lesions to malignant forms, and negative feedback by SOCS3 proteins decreases primary tumor growth.
“IL-6 signaling facilitates the progression of pre-neoplastic lesions to malignant forms, and negative feedback by SOCS3 proteins was found to decrease primary tumor growth.”
Quote in the paperNot a substantial claim1 of 1 sources checked- cites [45] Lesina, 2011, Stat3/Socs3 activation by IL-6 transsignaling promotes progression of pancreatic intraepithelial neoplasia and development of pancreatic cancer, Cancer Cell source
The Discussion (page unavailable) states that IL-6 transsignaling promotes progression of preneoplastic pancreatic lesions and development of pancreatic cancer. The Results (page unavailable) identify SOCS3 as a negative-feedback inhibitor and show that deleting it accelerates lesion progression and shortens tumor latency. The paper does not establish that SOCS3 feedback decreases the growth of an existing primary tumor. (LLM, conf=0.86)
Experimental — accuracy not yet measured
May combine two claims.
Findingown dataSTAT3 knockdown ablated STAT3 expression and reduced fermentative rate.
“Knockdown ablated STAT3 expression, and acute treatment with napabucasin (1 μM) reduced STAT3 phosphorylation; both reduced fermentative rate (Figures 4F, 4G, and S7A).”
Quote in the paperSubstantial claimMay combine two claims.
Findingown dataIL6R, IL6ST, BAG4, EFNB2, and FOXJ1 were more highly expressed in PANC-1 compared to MIA PaCa-2 cells, consistent with the CCLE analyses.
“Moreover, IL6R, IL6ST, BAG4, EFNB2, and FOXJ1 were more highly expressed in PANC-1 compared to MIA PaCa-2 cells, consistent with the CCLE analyses.”
Quote in the paperNot a substantial claimMay combine two claims.
Findingown dataBxPC-3 and HPAC cells had low STAT3 levels that were distributed uniformly between the nucleus and cytoplasm.
“BxPC-3 and HPAC cells had low STAT3 levels that were distributed uniformly between the nucleus and cytoplasm.”
Quote in the paperSubstantial claimMay combine two claims.
Findingown dataThe highest STAT3 signals were reported in PANC-1 and MIA PaCa-2 cells, of which MIA PaCa-2 also showed evidence for a broader distribution of the nuclear/cytoplasmic STAT3 ratio.
“The highest STAT3 signals were reported in PANC-1 and MIA PaCa-2 cells, of which the latter also showed evidence for a broader distribution of the nuclear/cytoplasmic STAT3 ratio.”
Quote in the paperSubstantial claimThe quote only partly states this claim.
Findingown dataSTAT3 inhibition with napabucasin decreases IL-6 production in MIA PaCa-2 cells.
“STAT3 inhibition with napabucasin decreased IL-6 production”
Quote in the paperSubstantial claimMay combine two claims.
Findingown dataPHLachigh and PHLaclow sub-populations resolved well on principal-component analysis and showed distinct patterns of gene expression.
“PHLachigh and PHLaclow sub-populations resolved well on principal-component analysis (Figure 3A) and showed distinct patterns of gene expression (Figure 3B; Table S2).”
Quote in the paperSubstantial claimMay combine two claims.
Findingown dataLaconic detected a rise in [lactate] when superfusates were switched from galactose containing to lactate containing, but the response was modest and comparable to baseline variation.
“Although Laconic detected a rise in [lactate] when superfusates were switched from galactose containing to lactate containing, the response was modest and comparable to baseline variation (Figure S1D).”
Quote in the paperSubstantial claimMay combine two claims.
Findingown dataThe PHLac distribution was narrowest in HPAC and broadest in MIA PaCa-2, matching the distributions of fermentative rate.
“The PHLac distribution was narrowest in HPAC and broadest in MIA PaCa-2 (Figure 1D), matching the distributions of fermentative rate (Figure 1B).”
Quote in the paperSubstantial claimMay combine two claims.
Findingown dataSTAT3 levels were even lower in AsPC-1 and Colo-357 cells, with some degree of non-uniformity.
“STAT3 levels were even lower in AsPC-1 and Colo-357 cells, with some degree of non-uniformity.”
Quote in the paperSubstantial claimMay combine two claims.
Findingown dataCells from the top and bottom deciles of the PHLac distribution produced lactate-evoked pHi transients of markedly different time courses, providing a window for flow-cytometric sorting using pHi-sensitive fluorescence.
“Cells from the top and bottom deciles of the PHLac distribution produced lactate-evoked pHi transients of markedly different time courses, providing a window for flow-cytometric sorting using pHi-sensitive fluorescence (Figure 1E).”
Quote in the paperSubstantial claimProbably not a substantial claim: may not pass S3 (load-bearing).
Findingown dataThere were major transcriptional differences between sub-populations of contrasting metabolic rates that may relate to pathways other than IL-6R/STAT3/SOCS3.
“there were major transcriptional differences between sub-populations of contrasting metabolic rates that may relate to pathways other than IL-6R/STAT3/SOCS3”
Quote in the paperNot a substantial claimClassified as probably not a substantial claim.
Premisenone givenThe extent and causes of within-population metabolic heterogeneity in PDAC remain unclear.
“However, the extent and causes of within-population metabolic heterogeneity remain unclear.”
Quote in the paperSubstantial claimMay combine two claims.
Interpretationown dataIL-6R/STAT3 activates fermentation and transcription of its inhibitor SOCS3, resulting in delayed negative feedback that underpins transitions between metabolic states.
“IL-6R/STAT3 activates fermentation and transcription of its inhibitor, SOCS3, resulting in delayed negative feedback that underpins transitions between metabolic states.”
Quote in the paperSubstantial claimProbably not a substantial claim: may not pass S2 (checkable), S4 (based).
PremisereasoningOne way of managing resources is through rationing, which could be implemented by alternating the metabolic activity of cells between low and high states, thereby establishing dynamic heterogeneity.
“One way of managing resources is through rationing, which could be implemented by alternating the metabolic activity of cells between “low” and “high” states, thereby establishing dynamic heterogeneity.”
Quote in the paperNot a substantial claimProbably not a substantial claim: may not pass S3 (load-bearing).
PremisecitationMutations enabling rapid proliferation are selected positively in cancers because they accelerate the emergence of aggressive phenotypes through somatic evolution.
“Mutations enabling rapid proliferation are selected positively in cancers because they accelerate the emergence of aggressive phenotypes through somatic evolution.1,2”
Quote in the paperNot a substantial claim0 of 2 sources checkedProbably not a substantial claim: may not pass S4 (based). May combine two claims.
Premisenone givenGenotypes with hard-wired metabolic activation may have an inherent growth advantage and could, with time, overtake the tumor.
“genotypes with hard-wired metabolic activation may have an inherent growth advantage and could, with time, overtake the tumor.”
Quote in the paperNot a substantial claimClassified as probably not a substantial claim.
Premisenone givenMost observations of metabolic heterogeneity have been based on snapshots that describe heterogeneity at the point of measurement but cannot predict dynamics over time.
“However, most observations have been based on “snapshots” that describe heterogeneity at the point of measurement but cannot predict dynamics over time.”
Quote in the paperSubstantial claimProbably not a substantial claim: may not pass S2 (checkable), S3 (load-bearing), S4 (based).
PremisereasoningSuch a system could be implemented by coupling metabolism onto signaling cascades that show rhythm.
“Such a system could be implemented by coupling metabolism onto signaling cascades that show rhythm.”
Quote in the paperNot a substantial claimProbably not a substantial claim: may not pass S2 (checkable), S4 (based).
Premisenone givenMetabolism is an ensemble process that depends on a network of proteins and their kinetic and thermodynamic constraints.
“Since metabolism is an ensemble process that depends on a network of proteins and their kinetic and thermodynamic constraints, single-cell methods that measure gene expression may not adequately separate sub-populations by metabolic flux.”
Quote in the paperNot a substantial claimProbably not a substantial claim: may not pass S2 (checkable), S4 (based).
PremisereasoningA sustainable form of dynamic heterogeneity would require cells to seamlessly alternate between metabolic states.
“A sustainable form of dynamic heterogeneity would require cells to seamlessly alternate between metabolic states.”
Quote in the paperNot a substantial claimClassified as probably not a substantial claim.
PremisecitationA simple cycling process requires delayed negative feedback.
“A minimum requirement for a simple cycling process is to feature delayed negative feedback”
Quote in the paperSubstantial claim0 of 1 sources checked- cites [20] Monk, 2003, Oscillatory expression of Hes1, p53, and NF-kappaB driven by transcriptional time delays, Curr. Biol. source
May combine two claims.
Interpretationown dataPhenotype may be shaped by the state of signaling and contributions from thermodynamic, allosteric, and post-translational factors that are not captured by transcriptomics.
“Instead, phenotype may be shaped by the state of signaling and contributions from thermodynamic, allosteric, and post-translational factors that are not captured by transcriptomics.”
Quote in the paperSubstantial claimClassified as probably not a substantial claim.
Study design and conductnone given2-NBDG loading did not inhibit glycolysis.
“NB: 2-NBDG loading did not inhibit glycolysis”
Quote in the paperSubstantial claimProbably not a substantial claim: may not pass S4 (based).
PremisereasoningCells with high fermentation rates require adequate capacity to conduct an efflux of lactate across the membrane to match their glycolytic production.
“We reasoned that cells with high fermentation rates require adequate capacity to conduct an efflux of lactate across the membrane to match their glycolytic production.”
Quote in the paperNot a substantial claimProbably not a substantial claim: may not pass S4 (based).
PremisereasoningUnder the constraints of flux balance, cells with a higher glycolytic rate are expected to have greater capacity to remove lactic acid across the membrane.
“Under the constraints of flux balance, cells with a higher glycolytic rate are expected to have greater capacity to remove lactic acid across the membrane.”
Quote in the paperNot a substantial claimProbably not a substantial claim: may not pass S3 (load-bearing).
Study design and conductown dataSelected DEGs were verified by RT-qPCR analysis of independently collected MIA PaCa-2 samples.
“Selected DEGs were verified by RT-qPCR analysis of independently collected MIA PaCa-2 samples (Figure 3F).”
Quote in the paperNot a substantial claimClassified as probably not a substantial claim.
InterpretationreasoningA saturation phenomenon may limit the ability of PANC-1 cells to generate heterogeneity.
“A saturation phenomenon may limit the ability of PANC-1 cells to generate heterogeneity.”
Quote in the paperSubstantial claimMay combine two claims.
PremisecitationIn other cell types, activated STAT3 induces SOCS3 expression, and SOCS3 inhibits JAKs responsible for phosphorylating STAT3.
“activated STAT3 induces SOCS3 expression, the protein product of which inhibits Janus kinases (JAKs) responsible for phosphorylating STAT3”
Quote in the paperSubstantial claim0 of 1 sources checked- cites [39] Brender, 2001, STAT3-mediated constitutive expression of SOCS-3 in cutaneous T-cell lymphoma, Blood source
Probably not a substantial claim: may not pass S2 (checkable). May combine two claims.
Premisenone givenGlucose uptake is the first step in metabolism, but its relationship to metabolic flux is less intuitive.
“Although glucose uptake is the first step in metabolism, its relationship to metabolic flux is less intuitive.”
Quote in the paperNot a substantial claimProbably not a substantial claim: may not pass S3 (load-bearing).
Interpretationown dataThe transient stimulation of respiration upon STAT3 inhibition may be a compensatory response.
“Strikingly, the effect of STAT3 inhibition on blocking fermentation transiently stimulated respiration, which may be a compensatory response (Figure S7B).”
Quote in the paperNot a substantial claimProbably not a substantial claim: may not pass S3 (load-bearing). May combine two claims.
InterpretationreasoningThe mechanism described in MIA PaCa-2 cells can explain one aspect of metabolic heterogeneity in this PDAC line, but other mechanisms may be relevant in other cancer cells.
“The mechanism described in MIA PaCa-2 cells can explain one aspect of metabolic heterogeneity in this PDAC line, but other mechanisms may be relevant in other cancer cells.”
Quote in the paperNot a substantial claimProbably not a substantial claim: may not pass S3 (load-bearing).
Study design and conductnone givenThe study's scope was limited by the low yield of cells obtained by FACS because of the short window for sorting.
“The scope of our investigation was limited by the low yield of cells obtained by FACS because of the short window for sorting.”
Quote in the paperNot a substantial claimProbably not a substantial claim: may not pass S2 (checkable), S3 (load-bearing). May combine two claims.
InterpretationreasoningOther genes may contribute to the distinct phenotypes and warrant further testing.
“other genes may contribute to the distinct phenotypes and warrant further testing”
Quote in the paperNot a substantial claimProbably not a substantial claim: may not pass S3 (load-bearing), S4 (based).
InterpretationreasoningMetabolic rate may seamlessly alternate between states, giving cancer cells a time-window for engaging energetically-demanding processes, such as protein synthesis or cell division.
“Metabolic rate may seamlessly alternate between states, giving cancer cells a time-window for engaging energetically-demanding processes, such as protein synthesis or cell division.”
Quote in the paperNot a substantial claimThe quote only partly states this claim.
InterpretationreasoningThe IL-6R/STAT3/SOCS3 cascade drives metabolic heterogeneity.
“A role of the IL-6R/STAT3/SOCS3 cascade in driving metabolic heterogeneity is novel”
Quote in the paperSubstantial claimMay combine two claims.
InterpretationreasoningA delayed negative feedback circuit in IL-6R/STAT3/SOCS3 would cause the metabolism-activating effect of IL-6 to be rhythmic and produce dynamic metabolic heterogeneity at the population level.
“Inherently, such a circuit would cause the metabolism-activating effect of IL-6 to be rhythmic, which—in turn—would produce dynamic metabolic heterogeneity observed at the population level.”
Quote in the paperSubstantial claimMay combine two claims.
InterpretationcitationSOCS3 operates a delayed negative feedback, which is one mechanism for producing rhythmic activity.
“SOCS3 operates a delayed negative feedback, which is one mechanism for producing rhythmic activity.”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [20] Monk, 2003, Oscillatory expression of Hes1, p53, and NF-kappaB driven by transcriptional time delays, Curr. Biol. source
Probably not a substantial claim: may not pass S3 (load-bearing), S4 (based).
Interpretationnone given2D monolayer growth could itself produce metabolic variation.
“which could, per se, produce metabolic variation”
Quote in the paperNot a substantial claimProbably not a substantial claim: may not pass S3 (load-bearing).
Study design and conductnone givenThe study was limited to measurements of cells grown as 2D monolayers.
“this study was limited to measurements of cells grown as 2D monolayers”
Quote in the paperNot a substantial claimProbably not a substantial claim: may not pass S3 (load-bearing).
Study design and conductnone givenThe expression of GAPDH and SNW1 were used for internal calibration.
“The expression of glyceraldehyde-3-phosphate dehydrogenase (GAPDH) and SNW Domain Containing 1 (SNW1) were used for internal calibration.”
Quote in the paperNot a substantial claimProbably not a substantial claim: may not pass S3 (load-bearing), S4 (based).
Interpretationnone givenIn tumors, an additional layer of metabolic heterogeneity will arise because of the immediate environment of cells, such as gradients of signaling molecules.
“In tumors, an additional layer of metabolic heterogeneity will arise because of the immediate environment of cells, such as gradients of signaling molecules.”
Quote in the paperNot a substantial claimProbably not a substantial claim: may not pass S3 (load-bearing). May combine two claims.
Study design and conductnone givenAll animal procedures followed the Animals (Scientific Procedures) Act 1986 and were authorized by Project License no. PPL P01A04016.
“All animal procedures followed the Animals (Scientific Procedures) Act 1986 and were authorized by Project License no. PPL P01A04016.”
Quote in the paperNot a substantial claimProbably not a substantial claim: may not pass S3 (load-bearing).
Study design and conductnone givenPrior to measurements, media were covered with a layer of 150 μL mineral oil to impose a barrier to gas diffusion.
“Prior to measurements, media were covered with a layer of 150 μL mineral oil (M5904, Sigma) to impose a barrier to gas diffusion.”
Quote in the paperNot a substantial claimProbably not a substantial claim: may not pass S3 (load-bearing).
Study design and conductnone givenβ-actin protein was used as a loading control.
“β-actin (1:5000, Proteintech, #HRP-60008) protein was used as a loading control.”
Quote in the paperNot a substantial claimProbably not a substantial claim: may not pass S3 (load-bearing).
Study design and conductcitationThe intracellular pH ratio was calibrated to units of pH using a calibration curve determined in separate experiments using the nigericin technique.
“The ratio was calibrated to units of pH using a calibration curve determined in separate experiments using the nigericin technique.52”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [52] Dovmark, 2018, Normoxic cells remotely regulate the acid-base balance of cells at the hypoxic core of connexin-coupled tumor growths, Faseb. J. source
Probably not a substantial claim: may not pass S3 (load-bearing).
Study design and conductnone givenCell lines authentication based on STR profiling was conducted in the AuthentiCell service provided by the European Collection of Authenticated Cell Cultures.
“Cell lines authentication based on Short Tandem Repeat (STR) profiling was conducted in the AuthentiCell service provided by the European Collection of Authenticated Cell Cultures.”
Quote in the paperNot a substantial claimProbably not a substantial claim: may not pass S4 (based).
Study design and conductnone givenLimiting the sorting period to 10 min adequately distinguishes cells with high and low MCT permeability (alkaline and acidic pHi).
“The sorting period was limited to 10 min, which adequately distinguishes cells with high and low MCT permeability (alkaline and acidic pHi).”
Quote in the paperNot a substantial claimProbably not a substantial claim: may not pass S3 (load-bearing).
Study design and conductnone givenIn flow cytometric sorting, dead, DAPI-stained cells and cell doublets were excluded from the gating.
“The dead, DAPI-stained cells, and cell doublets were excluded from the gating.”
- Also stated in: § Method details · plain
“The dead, DAPI-stained cells, and cell doublets were excluded from the gating.”
Quote in the paperNot a substantial claim- Also stated in: § Method details · plain
Classified as probably not a substantial claim.
Study design and conductown dataSOCS3 knock-out was confirmed by Western blotting.
“SOCS3 knock-out was confirmed by Western blotting.”
Quote in the paperSubstantial claim
The paper relies on this without support.
MIA PaCa-2 cells are a suitable model for studying metabolic heterogeneity in PDAC.
“Among the PDAC lines, we identified MIA PaCa-2 as having the broadest metabolic heterogeneity and used these cells to validate our sorting strategy.”
The paper relies on this without support.
The metabolic phenotype of MIA PaCa-2 cells in culture reflects the behavior of PDAC cells in tumors in vivo.
“Next, we investigated the state of STAT3 signaling in MIA PaCa-2 xenografts.”
The paper relies on this without support.
SOCS3 transcription and translation incur a time delay.
“Since SOCS3 transcription and translation incur a time delay”
The paper relies on this without support.
Glycolytic lactic acid production must be in balance with its transmembrane excretion.
“glycolytic lactic acid production must be in balance with its transmembrane excretion”
The paper relies on this without support.
Membrane permeability properties are less labile than metabolite concentrations and relate more directly to actual flux.
“membrane permeability properties are less labile than metabolite concentrations and relate more directly to actual flux”
The paper relies on this without support.
A point measurement cannot infer flux, and metabolite levels can be labile during sample preparation and sorting.
“a point measurement cannot infer flux, and metabolite levels can be labile during sample preparation and sorting”
The paper relies on this without support.
Upon forming the IL-6 receptor complex, JAKs phosphorylate gp130, triggering STAT3 phosphorylation to its active form.
“Upon forming the receptor complex, JAKs phosphorylate gp130, triggering STAT3 phosphorylation to its active form.”
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
Each contradiction between two passages listed here was confirmed by an independent check.
Nearest-neighbor correlation method is reported as both Pearson and Spearman
MinorThe Figure 5 legend says the nearest-neighbor analysis used Pearson's correlation coefficient, while the methods say it used Spearman's coefficient for the same analysis.
“(D) Nearest-neighbor analysis, correlating STAT3 nuclear/cytoplasmic ratio to the ratio in the nearest 3 cells, next-nearest 10 cells, next-nearest 100 cells, and next-nearest 10,000 cells (Pearson’s correlation coefficient).”
“Nearest neighbors were identified by proximity and correlation was calculated using Spearman’s coefficient for each cell in the field of view.”
Materials statement conflicts with paper-generated constructs
MinorThe materials availability statement says the study generated no unique reagents, but the key resources table identifies lentiCRISPR constructs made in this paper.
“This study did not generate unique reagents.”
“| lentiCRISPR constructs with gRNA insert listed above | This paper | N/A |”
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Self-citationTakhaveev, V., Özsezen, S., Smith, E. N., Zylstra, A., Chaillet, M. L., Chen, H., Papagiannakis, A., Milias-Argeitis, A., & Heinemann, M. (2023) · Nature Metabolism · doi:10.1038/s42255-023-00741-x · Cited by 36 · see citing works
Michl, J., Monterisi, S., White, B., Błaszczak, W., Hulı́ková, A., Abdullayeva, G., Bridges, E., Yin, Z., Bodmer, W. F., & Swietach, P. (2023) · Cell Reports · doi:10.1016/j.celrep.2023.112601 · Cited by 36 · see citing works
Self-citationBlaszczak, W., Williams, H., & Swietach, P. (2022) · British Journal of Cancer · doi:10.1038/s41416-022-01910-7 · Cited by 32 · see citing works
Self-citationFletcher, T. C., DiGiandomenico, A., & Hawiger, J. (2010) · Journal of Biological Chemistry · doi:10.1074/jbc.m109.095216 · Cited by 31 · see citing works
Studying Cell Cycle-regulated Gene Expression by Two Complementary Cell Synchronization Protocols
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Self-citationFerrara, B., Dugnani, E., Sordi, V., Pasquale, V., Pellegrini, S., Reni, M., Balzano, G., & Piemonti, L. (2022) · International Journal of Molecular Sciences · doi:10.3390/ijms231810663 · Cited by 12 · see citing works
Cost-Effective Real-Time Metabolic Profiling of Cancer Cell Lines for Plate-Based Assays
Blaszczak, W., Tan, Z., & Swietach, P. (2021) · Chemosensors · doi:10.3390/chemosensors9060139 · Cited by 10 · see citing works
Self-citationPrognostic value of glycolysis markers in pancreatic cancer: A systematic review and meta-analysis
Wang, C., Xu, R., Song, J., Chen, Y., Yin, X., Ruze, R., & Xu, Q. (2022) · Frontiers in Oncology · doi:10.3389/fonc.2022.1004850 · Cited by 6 · see citing works
Nishida (1999) · doi:10.1002/(sici)1096-9098(199907)71:3
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STAT3 Signaling Pathway in Health and Disease
Samad, M. A., Ahmad, I., Hasan, A., Alhashmi, M. H., Ayub, A., Al-Abbasi, F. A., Kumer, A., & Tabrez, S. S. M. (2025) · MedComm · doi:10.1002/mco2.70152 · Cited by 130 · see citing works
Alver, T. N., Bergholtz, H., Holm, M. B., Dorg, L. T., Skrede, M. L., Kure, E. H., & Verbeke, C. S. (2025) · Modern Pathology · doi:10.1016/j.modpat.2025.100726 · Cited by 28 · see citing works
Ibello, E., Saracino, F., Cave, D. D., Buonaiuto, S., Amoroso, F., Andolfi, G., Corona, M., Guardiola, O., Colonna, V., Sáinz, B., et al. (2024) · Journal of Experimental & Clinical Cancer Research · doi:10.1186/s13046-024-03072-1 · Cited by 13 · see citing works
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Protocol for separating cancer cell subpopulations by metabolic activity using flow cytometry
Błaszczak, W., White, B., & Swietach, P. (2024) · STAR Protocols · doi:10.1016/j.xpro.2024.103105 · Cited by 2 · see citing works
Self-citationKRAS-driven cytokine–metabolic crosstalk shapes immune exclusion in pancreatic ductal adenocarcinoma
Huang, C., Mai, G., Li, Y., Liu, H., & Huang, W. (2026) · Frontiers in Genetics · doi:10.3389/fgene.2026.1899014 · Cited by 1 · see citing works
Ibello, E., Saracino, F., Delle Cave, D., Buonaiuto, S., Amoroso, F., Andolfi, G., Corona, M., Guardiola, O., Colonna, V., Sainz Jr, B., et al. (2024) · Figshare · doi:10.6084/m9.figshare.26043787
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Ibello, E., Saracino, F., Delle Cave, D., Buonaiuto, S., Amoroso, F., Andolfi, G., Corona, M., Guardiola, O., Colonna, V., Sainz Jr, B., et al. (2024) · Figshare · doi:10.6084/m9.figshare.26043710
Mao, Y., Xu, L., & Yao, M. (2026) · Frontiers in Molecular Neuroscience · doi:10.3389/fnmol.2026.1834555
SOCS3 deficiency drives the primed to naive pluripotency transition by sustaining STAT3 activation
Rq, L., Huang, S., Du, M., et al. (2026) · Frontiers in Genetics · doi:10.3389/fgene.2026.1857225
- Authors
- Blaszczak, W., White, B., Monterisi, S., & Swietach, P.
- Affiliations
- University of Oxford (GB)
- Corresponding author
- Swietach, Pawel
- Venue
- Cell Reports
- Publisher
- Elsevier BV
- Published
- 2024-01
- Volume
- 43
- Issue
- 1
- Pages
- 113612
- ISSN
- 2211-1247 (ISSN-L)
- PMC
- PMC11149489
- OpenAlex
- W4390130159
- Semantic Scholar
- 8cd8dd180e059af18e5d80e6b44ad6de8b050395
- Cited by
- 9
- References
- 56
- Citations by year
- 2026: 3 · 2025: 2 · 2024: 4
- FWCI
- 1.07
- Type
- journal article
- Language
- en
- Open access
- gold
- doi.org
- Licence
- Locations
- Cell Reports (publishedVersion, cc-by)
- PubMed (publishedVersion)
- PubMed Central (submittedVersion, cc-by)
- DOAJ (DOAJ: Directory of Open Access Journals) (submittedVersion, cc-by-sa)
- Funders
- Cancer Research UK (100200)
- European Research Council (723997)
- Commission of the European Communities (813834)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Cancer Research › Cancer, Hypoxia, and Metabolism
- Health Sciences › Medicine › Oncology › Pancreatic and Hepatic Oncology Research
- Health Sciences › Medicine › Oncology › Cytokine Signaling Pathways and Interactions
- Keywords
- pancreatic ductal adenocarcinoma, metabolic heterogeneity, fermentative metabolism, glycolysis, SOCS3, negative feedback, MIA PaCa-2 cells, tumor energy metabolism
- MeSH terms
- Humans, Pancreatic Neoplasms, Phenotype, Signal Transduction, Receptors, Interleukin-6, Carcinoma, Pancreatic Ductal, STAT3 Transcription Factor
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Claims read by deepseek-v4.1-flash under definition version 3 (extract-v3) on 2026-10-23.
Classified by jev-1.13-20260917 (gold-guideline-v0.2) on 2026-10-23.
Cited sources are checked by gpt-6-sol.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
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