Boosting power for clinical trials using classifiers based on multiple biomarkers
Open accessAbstract
Machine learning methods pool diverse information to perform computer-assisted diagnosis and predict future clinical decline. We introduce a machine learning method to boost power in clinical trials. We created a Support Vector Machine algorithm that combines brain imaging and other biomarkers to classify 737 Alzheimer's disease Neuroimaging initiative (ADNI) subjects as having Alzheimer's disease (AD), mild cognitive impairment (MCI), or normal controls. We trained our classifiers based on example data including: MRI measures of hippocampal, ventricular, and temporal lobe volumes, a PET-FDG numerical summary, CSF biomarkers (t-tau, p-tau, and Abeta(42)), ApoE genotype, age, sex, and body mass index. MRI measures contributed most to Alzheimer's disease (AD) classification; PET-FDG and CSF biomarkers, particularly Abeta(42), contributed more to MCI classification. Using all biomarkers jointly, we used our classifier to select the one-third of the subjects most likely to decline. In this subsample, fewer than 40 AD and MCI subjects would be needed to detect a 25% slowing in temporal lobe atrophy rates with 80% power--a substantial boosting of power relative to standard imaging measures.
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Kohannim et al. (2010) demonstrated that combining MRI, FDG-PET, and cerebrospinal fluid biomarkers yielded 5-10% accuracy gains over MRI alone.
“Kohannim et al. (2010) demonstrated that combining MRI, FDG-PET, and cerebrospinal fluid (CSF) biomarkers yielded 5–10% accuracy gains over MRI alone”
From Multimodal neuroimaging and AI integration in cognitive disorders: advances, challenges, and future directions for precision medicine (2026) · cites this paper as Kohannim et al., 2010
Results §3.2 reports higher training-set leave-one-out accuracy when both FDG-PET and CSF biomarkers were added: 11.6% for AD versus controls and 4.6% for MCI versus controls. Those gains are not the stated 5–10%, and the baseline classifier included ApoE and age as well as MRI. The section also says the improvement in independent-test ROC AUC was not statistically significant (page not provided). (LLM, conf=0.91)
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Self-citationAlzheimer's disease diagnosis in individual subjects using structural MR images: Validation studies
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InfluentialSelf-citationEcker, C., Rocha-Rego, V., Johnston, P., Mourão-Miranda, J., Marquand, A. F., Daly, E., Brammer, M. J., Murphy, C. M., & Murphy, D. (2009) · NeuroImage · doi:10.1016/j.neuroimage.2009.08.024 · Cited by 387 · cited 4× · see citing works
“…learning algorithm for this report due to its successful performance in the previous AD literature (Davatzikos et al., 2009, Fan et al., 2008, Mesrob et al., 2008, Vemuri et al., 2008), and for other neurobiological applications (Ecker et al., 2010, Koutsouleris et al., 2009, Wilson et al., 2009).”
InfluentialHua, X., Leow, A., Parikshak, N., Lee, S., Chiang, M.-C., Toga, A. W., Jack, C. R., Weiner, M. W., & Thompson, P. M. (2008) · NeuroImage · doi:10.1016/j.neuroimage.2008.07.013 · Cited by 359 · cited 1× · see citing works
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“Brain atrophy rates measured by MRI correlate with the progression of Alzheimer’s disease, and offer baseline and transitional predictive power for diagnosis, making them clinically relevant endpoints for power analysis (Duara et al., 2008, Fox et al., 2000, Jack et al., 2004).”
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InfluentialLerch, J. P., Pruessner, J. C., Zijdenbos, A. P., Collins, D. L., Teipel, S. J., Hampel, H. J., & Evans, A. C. (2006) · Neurobiology of Aging · doi:10.1016/j.neurobiolaging.2006.09.013 · Cited by 281 · cited 2× · see citing works
“Several studies have performed diagnostic classification based on MRI scans, using measures such as whole-brain patterns of atrophy (Davatzikos et al., 2009; Mesrob et al., 2008), tissue densities from voxel-based morphometry (Vemuri et al., 2008) and cortical thickness (Lerch et al., 2008).”
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“By using a multi-modality regression approach to predicting cognitive decline in ADNI subjects, a very recent study found that a linear combination of MRI and PET-FDG was a better predictor of cognitive decline than CSF biomarkers (Walhovd et al., 2010), consistent with our best set of biomarkers.”
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Self-citationMedial temporal lobe atrophy on MRI scans and the diagnosis of Alzheimer disease
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3D comparison of hippocampal atrophy in amnestic mild cognitive impairment and Alzheimer's disease
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“Unexpectedly, however, the MRI hippocampal summaries were not incorporated into our predictive model, which is surprising as hippocampal volume can be useful for prediction of MCI progression to AD (Apostolova et al., 2006a; Apostolova et al., 2006b; Apostolova et al., 2007; Frisoni et al., 2010).”
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“BMI was included as a number of recent studies found that higher BMI is associated with greater brain atrophy in normal elderly subjects (Raji et al., 2009), and in MCI and AD (Ho et al., 2010b).”
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“The hippocampal summaries were volumes generated from an automatic segmentation method that we developed based on machine learning; we recently validated this method against manual gold standards (Morra et al., 2008; Morra et al., 2009; Morra et al., 2010).”
InfluentialSelf-citationIndividual patient diagnosis of AD and FTD via high-dimensional pattern classification of MRI
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“The hippocampal summaries were volumes generated from an automatic segmentation method that we developed based on machine learning; we recently validated this method against manual gold standards (Morra et al., 2008; Morra et al., 2009; Morra et al., 2010).”
Self-citationSex and age differences in atrophic rates: an ADNI study with n=1368 MRI scans
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“As we noted in Hua et al. (2010b), treatments may slow atrophy to different degrees, which may be denoted by k %, for different k .”
InfluentialSelf-citationSpatially augmented LPboosting for AD classification with evaluations on the ADNI dataset
Chris Hinrichs, A., Singh, V., Mukherjee, L., Xu, G., Chung, M. K., & Johnson, S. C. (2009) · NeuroImage · doi:10.1016/j.neuroimage.2009.05.056 · Cited by 226 · cited 1× · see citing works
“PET, for example, offers metabolic or perfusion-based information that complements measures of structural atrophy on MRI (Fan et al., 2008; Hinrichs et al., 2009).”
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“More sensitive and specific markers of early AD progression will help monitor the effectiveness of new treatments, and lessen the time and cost of clinical trials.”
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“When k is less than about 33%, the power estimates for AD subjects are improved compared with the minimal sample size of AD 48 subjects reported by Hua et al. (2009). There is a drop in the sample sizes needed to show a specific slowing effect, as the more AD-like subjects are selected.”
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“It is worth noting that MRI-based machine learning has been used widely for classification not only for AD, but also for predicting changes in patients with brain tumors (Lukas et al., 2004), aphasia (Wilson et al.”
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“We also considered ApoE genotype (coded as 0, 1 or 2 for the number of E4 alleles), age, sex and BMI, as each can influence AD risk (Corder et al., 1993, Lindsay et al., 2002, Azad et al., 2007, Buchman et al., 2005).”
Morra, J. H., Tu, Z., Apostolova, L. G., Green, A. E., Avedissian, C., Madsen, S. K., Parikshak, N., Hua, X., Toga, A. W., Jack, C. R., et al. (2008) · NeuroImage · doi:10.1016/j.neuroimage.2008.07.003 · Cited by 199 · cited 2× · see citing works
“The hippocampal summaries were volumes generated from an automatic segmentation method that we developed based on machine learning; we recently validated this method against manual gold standards (Morra et al., 2008; Morra et al., 2009; Morra et al., 2010).”
Self-citationVolumetric MRI vs clinical predictors of Alzheimer disease in mild cognitive impairment
Fleisher, A., Sun, S., Taylor, C., Ward, C., Gamst, A. C., Petersen, R. C., Jack, C. R., Aisen, P. S. S., & Thal, L. J. (2008) · Neurology · doi:10.1212/01.wnl.0000287091.57376.65 · Cited by 177 · cited 1× · see citing works
“MRI-based temporal and ventricular volumes have also been reported for their predictive power in MCI subjects (Fleisher et al., 2008; Korf et al., 2004).”
Self-citationHua, X., Leow, A., Lee, S., Klunder, A. D., Toga, A. W., Leporé, N., Chou, Y.-Y., Brun, C., Chiang, M. Y.-H., & Marina Barysheva, A. (2008) · NeuroImage · doi:10.1016/j.neuroimage.2008.02.010 · Cited by 169 · see citing works
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“A similar approach to boost the power of imaging biomarkers is voxel-set pre-selection, which substantially boosts power to detect the slowing of atrophy (Hua et al., 2010; Chen et al., 2010).”
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“The few ADNI studies that have assessed the field strength effect (Ho et al., 2009; Kruggel et al., 2010) suggest that 1.”
InfluentialApostolova, L. G., Steiner, C. A., Akopyan, G. G., Dutton, R. A., Hayashi, K. M., Toga, A. W., Cummings, J. L., & Thompson, P. M. (2007) · Archives of Neurology · doi:10.1001/archneur.64.10.1489 · Cited by 150 · cited 1× · see citing works
“Unexpectedly, however, the MRI hippocampal summaries were not incorporated into our predictive model, which is surprising as hippocampal volume can be useful for prediction of MCI progression to AD (Apostolova et al., 2006a; Apostolova et al., 2006b; Apostolova et al., 2007; Frisoni et al., 2010).”
Self-citationSun, D., van Erp, T. G. M., Thompson, P. M., Bearden, C. E., Daley, M., Kushan, L., Hardt, M. E., Nuechterlein, K. H., Toga, A. W., & Cannon, T. D. (2009) · Biological Psychiatry · doi:10.1016/j.biopsych.2009.07.019 · Cited by 148 · cited 2× · see citing works
“We and others have found that a classifier can be given and entire brain image, and from it can derive the voxels whose signals are most promising for group classification (Sun et al., 2009).”
Self-citationStein, J. L., Hua, X., Morra, J. H., Lee, S., Hibar, D. P., Ho, A. J., Leow, A. D., Toga, A. W., Sul, J. H., Kang, H. M., et al. (2010) · NeuroImage · doi:10.1016/j.neuroimage.2010.02.068 · Cited by 145 · cited 1× · see citing works
“Furthermore, machine learning can perhaps be used to discover genetic (Stein et al., 2009; Stein et al., 2010), epidemiological and physiological factors that influence the progression of AD.”
Self-citationHua, X., Lee, S., Yanovsky, I., Leow, A. D., Chou, Y.-Y., Ho, A. J., Gutman, B., Toga, A. W., Jack, C. R., Bernstein, M. A., et al. (2009) · NeuroImage · doi:10.1016/j.neuroimage.2009.07.011 · Cited by 145 · see citing works
Self-citationP1‐196: Dementia in Malta: Experiences of dementia patients and their caregivers
Scerri, C., Abela, S., & Innes, A. (2009) · Alzheimer s & Dementia · doi:10.1016/j.jalz.2009.04.202 · Cited by 130 · see citing works
Chou, Y.-Y., Leporé, N., Avedissian, C., Madsen, S. K., Parikshak, N., Hua, X., Shaw, L. M., Trojanowski, J. Q., Weiner, M. W., Toga, A. W., et al. (2009) · NeuroImage · doi:10.1016/j.neuroimage.2009.02.015 · Cited by 117 · cited 3× · see citing works
“…mild; there is also substantial cross-subject variation in ventricular volume, even in healthy subjects (Chou et al., 2009b), and this may throw off a classifier’s accuracy unless the disease effect outweighs this natural variation (Chou et al., 2008;Chou et al., 2009a;Chou et al., 2009b).”
InfluentialSelf-citationPlaque and tangle imaging and cognition in normal aging and Alzheimer's disease
Braskie, M. N., Klunder, A. D., Hayashi, K. M., Protas, H. D., Kepe, V., Miller, K. J., Huang, S.-C., Barrio, J. R., Ercoli, L. M., Siddarth, P., et al. (2008) · Neurobiology of Aging · doi:10.1016/j.neurobiolaging.2008.09.012 · Cited by 114 · cited 1× · see citing works
“…progression of the disease; in general, markers of amyloid deposition are thought to rise earlier than markers of neurodegeneration detectable on MRI, and these in turn become abnormal before tests of clinical function (Braskie et al., 2008; Jack et al., 2010; Petersen, 2010; Protas et al., 2010).”
Self-citationAutomated MRI-based classification of primary progressive aphasia variants
Wilson, S. M., Ogar, J. M., Laluz, V., Growdon, M. E., Jang, J. Y., Glenn, S., Miller, B. L., Weiner, M. W., & Gorno‐Tempini, M. L. (2009) · NeuroImage · doi:10.1016/j.neuroimage.2009.05.085 · Cited by 91 · cited 4× · see citing works
“…been used widely for classification not only for AD, but also for predicting changes in patients with brain tumors (Lukas et al., 2004), aphasia (Wilson et al., 2009), autism (Ecker et al., 2010), psychosis (Koutsouleris et al., 2009) and even for classifying patterns of brain activation in…”
InfluentialSelf-citationHua, X., Lee, S., Hibar, D. P., Yanovsky, I., Leow, A., Toga, A. W., Jack, C. R., Bernstein, M. A., Reiman, E. M., Harvey, D. J., et al. (2010) · NeuroImage · doi:10.1016/j.neuroimage.2010.01.104 · Cited by 84 · cited 6× · see citing works
“As we noted in Hua et al. (2010b), treatments may slow atrophy to different degrees, which may be denoted by k %, for different k .”
InfluentialSelf-citationHo, A. J., Hua, X., Lee, S., Leow, A., Yanovsky, I., Gutman, B. A., Dinov, I. D., Leporé, N., Stein, J. L., Toga, A. W., et al. (2009) · Human Brain Mapping · doi:10.1002/hbm.20882 · Cited by 75 · cited 3× · see citing works
“BMI was included as a number of recent studies found that higher BMI is associated with greater brain atrophy in normal elderly subjects (Raji et al., 2009), and in MCI and AD (Ho et al., 2010b).”
Self-citationChou, Y.-Y., Leporé, N., de Zubicaray, G. I., Carmichael, O. T., Becker, J. T., Toga, A. W., & Thompson, P. M. (2008) · NeuroImage · doi:10.1016/j.neuroimage.2007.11.047 · Cited by 73 · cited 4× · see citing works
“…mild; there is also substantial cross-subject variation in ventricular volume, even in healthy subjects (Chou et al., 2009b), and this may throw off a classifier’s accuracy unless the disease effect outweighs this natural variation (Chou et al., 2008;Chou et al., 2009a;Chou et al., 2009b).”
InfluentialSelf-citationDisease classification with hippocampal shape invariants
Gutman, B. A., Wang, Y., Morra, J. H., Toga, A. W., & Thompson, P. M. (2009) · Hippocampus · doi:10.1002/hipo.20627 · Cited by 72 · cited 3× · see citing works
“By comparing different imaging measures (voxel-based, ROI-based, or surface-based; Gutman et al., 2008), and different classifiers (SVM versus others), future studies may be able to gauge which aspects of the classifier (its mathematical design or the features used) are most relevant for boosting…”
Self-citationAlzheimer's disease: progress in prediction
Petersen, R. C. (2009) · The Lancet Neurology · doi:10.1016/s1474-4422(09)70330-8 · Cited by 60 · cited 4× · see citing works
“…(Klunk et al., 2004; Protas et al., 2010), metabolic decline or perfusion deficits assessed by fluoro-deoxyglucose PET (PET-FDG), brain atrophy on MRI, and risk factors that influence these measures (e.g. ApoE, cardiovascular risks, etc.) (Frisoni et al., 2010; Jack et al., 2010; Petersen, 2010).”
InfluentialMapping genetic influences on ventricular structure in twins
CHOU, Y., Leporé, N., Chiang, M. Y.-H., Avedissian, C., Marina Barysheva, A., McMahon, K. L., de Zubicaray, G. I., Meredith, M., Wright, M. J., & Toga, A. W. (2008) · NeuroImage · doi:10.1016/j.neuroimage.2008.10.036 · Cited by 38 · cited 3× · see citing works
“…mild; there is also substantial cross-subject variation in ventricular volume, even in healthy subjects (Chou et al., 2009b), and this may throw off a classifier’s accuracy unless the disease effect outweighs this natural variation (Chou et al., 2008;Chou et al., 2009a;Chou et al., 2009b).”
InfluentialSelf-citationMesrob, L., Magnin, B., Olivier Colliot, A., Sarazin, M., Hahn‐Barma, V., Dubois, B., Gallinari, P., Lehéricy, S., Kinkingnéhun, S., & Benali, H. (2008) · Lecture notes in computer science · doi:10.1007/978-3-540-79982-5_14 · Cited by 25 · cited 4× · see citing works
“Several studies have performed diagnostic classification based on MRI scans, using measures such as whole-brain patterns of atrophy (Davatzikos et al., 2009; Mesrob et al., 2008), tissue densities from voxel-based morphometry (Vemuri et al., 2008) and cortical thickness (Lerch et al., 2008).”
InfluentialFDDNP binding using MR derived cortical surface maps
Protas, H. D., Huang, S.-C., Kepe, V., Hayashi, K., Klunder, A. D., Braskie, M. N., Ercoli, L. M., Bookheimer, S. Y., Thompson, P. M., Small, G. W., et al. (2009) · NeuroImage · doi:10.1016/j.neuroimage.2009.08.035 · Cited by 24 · cited 2× · see citing works
“…deposition, measured by Positron Emission Tomography (PET) and radiotracers that bind to the plaques and tangles in the brain (Klunk et al., 2004; Protas et al., 2010), metabolic decline or perfusion deficits assessed by fluoro-deoxyglucose PET (PET-FDG), brain atrophy on MRI, and risk factors…”
Self-citationHampel, H., & Broich, K. (2009) · The Journal of Nutrition, Health & Aging · doi:10.1007/s12603-009-0048-3 · Cited by 23 · cited 1× · see citing works
“This result supports the concept of clinical trial enrichment, which has been previously advocated (Cummings et al., 2007; Frisoni et al., 2010; Hampel and Broich, 2009).”
TOPIRAMATE HELPS ESSENTIAL TREMOR, NEW STUDY REPORTS
Samson, K. (2006) · doi:10.1097/00132985-200602210-00002 · Cited by 5
Ayutyanont, N., Chen, K.-W., Liu, X.-F., Reschke, C., Lee, W., Bandy, D., Alexander, G., Jagust, W., Koeppe, R., Foster, N. L., et al. (2008) · doi:10.1016/j.jalz.2008.05.903 · Cited by 3 · cited 1×
“Specifically, in conference abstracts, Alexander et al. (2008) and Zhang et al. (2008) have advocated a multivariate network analysis in which a very large number of regional brain volumes are jointly used as predictors, in an SVM model.”
Alexander, G., Hanson, K. D., Chen, K.-W., Reiman, E., Bernstein, M. A., Kornak, J., Schuff, N., Fox, N. C., Thompson, P., Weiner, M. S. W., et al. (2008) · doi:10.1016/j.jalz.2008.05.011 · Cited by 2 · cited 1×
“Specifically, in conference abstracts, Alexander et al. (2008) and Zhang et al. (2008) have advocated a multivariate network analysis in which a very large number of regional brain volumes are jointly used as predictors, in an SVM model.”
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- Alzheimer’s Association Alzheimer’s disease facts and figures Alzheimer’s and Dementia 2009 5 3 234 70 19426951
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- Stein JL Hua X Morra JH Lee S Hibar DP Ho AJ Leow AD Toga AW Sul JH Kang H Eskin E Saykin AJ Shen L Foroud T Pankratz N Huentelman MJ Craig DW Gerber JD Allen AN Corneveaux JJ Stephan DA Webster J DeChairo BM Potkin SG Jack CR Jr. Weiner MW Thompson PM Genome-wide association study of temporal lobe structure identifies novel quantitative trait loci for neurodegeneration in Alzheimer’s disease NeuroImage 2010 in press PMC2856746 20197096
- Zhang H Wu T Bae M Reiman EM Alexander GE Jack CR Jr. Thompson PM Chen K Use Of The Support Vector Machine And Sensitivity Of an AD-related Region-of-interest Gray Matter Classifier In Identifying Amnestic MCI Subjects Who Convert To AD: Preliminary Findings From The AD Neuroimaging Initiative 26-31 July Presented at The International Conference on Alzheimer’s Disease Chicago 2008
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The Alzheimer's Disease Neuroimaging Initiative: A review of papers published since its inception
Weiner, M. W., Veitch, D. P., Aisen, P. S. S., Beckett, L. A., Cairns, N. J., Green, R. C., Harvey, D. J., Jack, C. R., Jagust, W. J., Liu, E., et al. (2011) · Alzheimer s & Dementia · doi:10.1016/j.jalz.2011.09.172 · Cited by 477 · see citing works
“Combined modalities The approach of Kohannim et al [86] combined multiple factors, including MRI and FDG-PET measures, CSF biomarkers, APOE genotype, age, sex, and BMI, to enhance machine learning methods for AD diagnosis.”
InfluentialSelf-citationHierarchical Feature Representation and Multimodal Fusion with Deep Learning for AD/MCI Diagnosis
Suk, H.-I., Lee, S.-W., & Shen, D. (2014) · NeuroImage · doi:10.1016/j.neuroimage.2014.06.077 · Cited by 968 · see citing works
“As for the fusion ofmultiplemodalities includingMRI, PET, biological and neurological data for discriminating AD/MCI patients from healthy Normal Control (NC), Kohannim et al. (2010) concatenated features from modalities into a vector and used a Support Vector Machine (SVM) classifier.”
InfluentialSelf-citationRathore, S., Habes, M., Iftikhar, M. A., Shacklett, A., & Davatzikos, C. (2017) · NeuroImage · doi:10.1016/j.neuroimage.2017.03.057 · Cited by 622 · see citing works
“Similarly, Kohannim et al. (2010) combined hippocampal, ventricular, and temporal lobe volumes, FDG-PET numeric summary, CSF biomarkers, APOE genotype, age, sex, and body mass index for SVM-based AD and MCI classification.”
Latent feature representation with stacked auto-encoder for AD/MCI diagnosis
Initiative, T. A. D. N., Suk, H., Lee, S., & Shen, D. G. (2013) · Brain Structure and Function · doi:10.1007/s00429-013-0687-3 · Cited by 523 · see citing works
“Kohannim et al. (2010) concatenated features from modalities into a vector and used a support vector machine (SVM) classifier.”
BackgroundMethodSelf-citationChris Hinrichs, A., Singh, V., Xu, G., & Johnson, S. C. (2010) · NeuroImage · doi:10.1016/j.neuroimage.2010.10.081 · Cited by 405 · see citing works
Islam, J., & Zhang, Y. (2018) · Brain Informatics · doi:10.1186/s40708-018-0080-3 · Cited by 491 · see citing works
AI in Health: State of the Art, Challenges, and Future Directions
Wang, F., & Preininger, A. (2019) · Yearbook of Medical Informatics · doi:10.1055/s-0039-1677908 · Cited by 398 · see citing works
“[90] investigated the usage of a support vector machine to boost the power of clinical trials and reduce the clinical trial sample size.”
BackgroundRegional variability of imaging biomarkers in autosomal dominant Alzheimer's disease
Benzinger, T. L. S., Blazey, T., Jack, C. R., Koeppe, R. A., Su, Y., Xiong, C., Raichle, M. E., Snyder, A. Z., Ances, B. M., Bateman, R. J., et al. (2013) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1317918110 · Cited by 391 · see citing works
Self-citationUpdate on the Magnetic Resonance Imaging core of the Alzheimer's Disease Neuroimaging Initiative
Jack, C. R., Bernstein, M. A., Borowski, B., Gunter, J. L., Fox, N. C., Thompson, P. M., Schuff, N. W., Krüger, G., Killiany, R., DeCarli, C. S., et al. (2010) · Alzheimer s & Dementia · doi:10.1016/j.jalz.2010.03.004 · Cited by 379 · see citing works
“With this method, FDG PET had similar power to detect change as MRI methods [12].”
MethodSelf-citationWeiner, M. W., Veitch, D. P., Aisen, P. S., Beckett, L. A., Cairns, N. J., Cedarbaum, J., Green, R. C., Harvey, D., Jack, C. R., Jagust, W., et al. (2015) · Alzheimer's & Dementia · doi:10.1016/j.jalz.2014.11.001 · Cited by 348 · see citing works
“Kohannim et al [86] investigated the utility of their machine learning classifier, based B) MMSE scores.”
BackgroundMethodInfluentialSelf-citationLin, M., Song, P., Zhou, G., Zuo, X., Aldalbahi, A. K., Lou, X., Shi, J., & Fan, C. (2016) · Nature Protocols · doi:10.1038/nprot.2016.071 · Cited by 390 · see citing works
Diffusion Imaging, White Matter, and Psychopathology
Thomason, M. E., & Thompson, P. M. (2011) · Annual Review of Clinical Psychology · doi:10.1146/annurev-clinpsy-032210-104507 · Cited by 302 · see citing works
“They are also useful for diagnosis and prognosis (Frisoni et al. 2010, Kohannim et al. 2010).”
BackgroundSelf-citationMulti-Method Analysis of MRI Images in Early Diagnostics of Alzheimer's Disease
Wolz, R., Julkunen, V., Koikkalainen, J. R., Niskanen, E. I., Zhang, D. P., Rueckert, D., Soininen, H. S., Lötjönen, J. M. P., & Initiative, T. A. D. N. (2011) · PLoS ONE · doi:10.1371/journal.pone.0025446 · Cited by 282 · see citing works
“In Kohannim et al. [17], the improvement from using multiple biomarkers was not significant and Davatzikos et al. [15] reported marginal improvements which, however, may be related to the fact that results with only one biomarker were not very good to begin with.”
BackgroundArtificial Intelligence in Psychological Practice: Current and Future Applications and Implications
Luxton, D. D. (2014) · Professional Psychology Research and Practice · doi:10.1037/a0034559 · Cited by 297 · see citing works
“…(SVMs; Cortes & Vapnik, 1995), for example, use machine learning to analyze, classify, and recognize patterns in data and have recently been tested in the classification of several diseases including Parkinson’s disease (Gil & Johnson, 2009) and Alzheimer’s disease ( Kohannim et al., 2010).”
MethodWestman, E., Muehlboeck, J., & Simmons, A. (2012) · NeuroImage · doi:10.1016/j.neuroimage.2012.04.056 · Cited by 304 · see citing works
“Kohannim et al. (2010) have also combined MRI, CSF and FDG-PET in a smaller cohort.”
BackgroundResultInfluentialLi, Y., El Habib Daho, M., Conze, P.-H., Zeghlache, R., Le Boité, H., Tadayoni, R., Cochener, B., Lamard, M., & Quellec, G. (2024) · Computers in Biology and Medicine · doi:10.1016/j.compbiomed.2024.108635 · Cited by 274 · see citing works
“…cropping, denoising, resampling, intensity normalization, regions-of-interest (ROI) extraction (Cu-ingnet et al., 2011; Davatzikos et al., 2011; Kohannim et al., 2010), and feature selection (Liu et al., 2012, 2014a; Akha-van Aghdam et al., 2018; Qian et al., 2020), prepare the data for more…”
MethodZhou, T., Thung, K., Zhu, X., & Shen, D. G. (2018) · Human Brain Mapping · doi:10.1002/hbm.24428 · Cited by 270 · see citing works
Multi-modal classification of Alzheimer's disease using nonlinear graph fusion
Tong, T., Gray, K. R., Gao, Q., Chen, L., & Rueckert, D. (2016) · Pattern Recognition · doi:10.1016/j.patcog.2016.10.009 · Cited by 258 · see citing works
“For example, in Kohannim et al. (2010), a support vector machine (SVM) classifier was applied to the concatenated features from multiple modalities for the classification of AD.”
BackgroundMethodBiomarkers of postoperative delirium and cognitive dysfunction
Androsova, G., Krause, R., Winterer, G., & Schneider, R. (2015) · Frontiers in Aging Neuroscience · doi:10.3389/fnagi.2015.00112 · Cited by 255 · see citing works
Automated hippocampal shape analysis predicts the onset of dementia in mild cognitive impairment
Costafreda, S. G., Dinov, I. D., Tu, Z., Shi, Y., Liu, C.-Y., Kłoszewska, I., Mecocci, P., Soininen, H. S., Tsolaki, M., Vellas, B. J., et al. (2011) · NeuroImage · doi:10.1016/j.neuroimage.2011.01.050 · Cited by 213 · see citing works
“This strategy increases the proportion of patients who could benefit from the intervention and optimizes the statistical power of the trial (Kohannim et al., 2010; Frisoni et al., 2010).”
BackgroundSelf-citationZhu, X., Suk, H.-I., Wang, L., Lee, S.-W., & Shen, D. (2017) · Medical Image Analysis · doi:10.1016/j.media.2015.10.008 · Cited by 224 · see citing works
“With respect to multi-modal fusion, it is known that different modalities can provide complementary information, and thus can enhance the diagnostic accuracy (Cui et al., 2011; Hinrichs et al., 2011; Kohannim et al., 2010; Perrin et al., 2009; Suk and Shen, 2013; Walhovd et al., 2010; Westman et al., 2012).”
Self-citationMagnetic resonance imaging in Alzheimer’s disease neuroimaging initiative 2
Jack, C. R., Barnes, J., Bernstein, M. A., Borowski, B. J., Brewer, J., Clegg, S., Dale, A. M., Carmichael, O., Ching, C., DeCarli, C., et al. (2015) · Alzheimer's & Dementia · doi:10.1016/j.jalz.2015.05.002 · Cited by 220 · see citing works
“[36] Kohannim O, Hua X, Hibar DP, Lee S, Chou YY, Toga AW, et al.”
BackgroundSelf-citationFalahati, F., Westman, E., & Simmons, A. (2014) · Journal of Alzheimer s Disease · doi:10.3233/jad-131928 · Cited by 229 · see citing works
“Support vector machines (SVM) [15, 16] are the most commonly used algorithm in AD research for multivariate classification [9, 17–39].”
Yuan, L., Wang, Y., Thompson, P. M., Narayan, V. A., & Ye, J. (2012) · NeuroImage · doi:10.1016/j.neuroimage.2012.03.059 · Cited by 195 · see citing works
Self-citationANALYSIS OF SAMPLING TECHNIQUES FOR IMBALANCED DATA: AN N=648 ADNI STUDY
Dubey, R., Zhou, J.-Y., Wang, Y.-L., Thompson, P., & Ye, J. (2013) · NeuroImage · doi:10.1016/j.neuroimage.2013.10.005 · Cited by 204 · see citing works
“…prior works on the automated disease diagnosis problem, that include partial least square based feature selection on MRI (Zhou et al., 2011), feature extraction methods based onMRI data (Cuingnet et al., 2011), and support vector machines to combine MRI, PET and CSF, etc. (Kohannim et al., 2010).”
Self-citationBraskie, M. N., Jahanshad, N., Stein, J. L., Marina Barysheva, A., McMahon, K. L., de Zubicaray, G. I., Martin, N. G., Wright, M. J., Ringman, J. M., Toga, A. W., et al. (2011) · Journal of Neuroscience · doi:10.1523/jneurosci.5794-10.2011 · Cited by 170 · see citing works
“Targeting subpopulations most likely to show decline also boosts power for prevention and treatment trials (Kohannim et al., 2010).”
BackgroundSelf-citationCerebrospinal fluid biomarkers in trials for Alzheimer and Parkinson diseases
Lleó, A., Cavedo, E., Parnetti, L., Vanderstichele, H., Herukka, S., Andreasen, N., Ghidoni, R., Lewczuk, P., Jeromin, A., Winblad, B. G., et al. (2014) · Nature Reviews Neurology · doi:10.1038/nrneurol.2014.232 · Cited by 159 · see citing works
Bhagwat, N., Viviano, J. D., Voineskos, A. N., Chakravarty, M. M., & Initiative, A. D. N. (2018) · PLOS Computational Biology · doi:10.1371/journal.pcbi.1006376 · Cited by 157 · see citing works
Vounou, M., Janoušová, E., Wolz, R., Stein, J. L., Thompson, P. M., Rueckert, D., & Montana, G. (2011) · NeuroImage · doi:10.1016/j.neuroimage.2011.12.029 · Cited by 147 · see citing works
“In particular, Kohannim et al. (2010) combined multiple biomarkers, including MRI and FDG-PET measures as well as CSF and other biomarkers for disease status classification using SVM classifiers and reported an increase in power to predict future decline.”
Self-citationCharacterizing Alzheimer's disease using a hypometabolic convergence index
Chen, K., Ayutyanont, N., Langbaum, J. B. S., Fleisher, A., Reschke, C., Lee, W., Liu, X., Bandy, D., Alexander, G. E., Thompson, P. M., et al. (2011) · NeuroImage · doi:10.1016/j.neuroimage.2011.01.049 · Cited by 160 · see citing works
“…the detection of AD and the prediction of subsequent clinical decline in MCI patients (Beckett et al., 2010; Chupin et al., 2009; Hua et al., 2008; Kohannim et al., 2010; Landau et al., 2010; Leung et al., 2010; Lorenzi et al., 2010; Morra et al., 2008; Risacher et al., 2009; Schott et al., 2010;…”
BackgroundResultSelf-citationMadsen, S. K., Ho, A. J., Hua, X., Saharan, P., Toga, A. W., Jack, C. R., Weiner, M. W., & Thompson, P. M. (2010) · Neurobiology of Aging · doi:10.1016/j.neurobiolaging.2010.05.002 · Cited by 144 · see citing works
Self-citationDeep sparse multi-task learning for feature selection in Alzheimer’s disease diagnosis
Initiative, T. A. D. N., Suk, H., Lee, S., & Shen, D. G. (2015) · Brain Structure and Function · doi:10.1007/s00429-015-1059-y · Cited by 164 · see citing works
“Recent studies have shown that information fusion of multiple modalities can help enhance the diagnostic performance (Perrin et al. 2009; Kohannim et al. 2010; Walhovd et al. 2010; Cui et al. 2011; Hinrichs et al. 2011; Zhang et al. 2011; Westman et al. 2012; Yuan et al. 2012; Zhang and Shen 2012; Suk et al. 2015).”
BackgroundSelf-citationHypergraph based multi-task feature selection for multimodal classification of Alzheimer's disease
Shao, W., Peng, Y., Zu, C., Wang, M., & Zhang, D. (2019) · Computerized Medical Imaging and Graphics · doi:10.1016/j.compmedimag.2019.101663 · Cited by 167 · see citing works
Surface-based TBM boosts power to detect disease effects on the brain: An N=804 ADNI study
Wang, Y., Song, Y., Rajagopalan, P., An, T., Liu, K., Chou, Y., Gutman, B. A., Toga, A. W., & Thompson, P. M. (2011) · NeuroImage · doi:10.1016/j.neuroimage.2011.03.040 · Cited by 126 · see citing works
“We hypothesized that our proposed multivariate morphometry feature may boost power by reducing sample size estimates required to observe effects, in both morphometry studies and potentially also in clinical trials (Hua et al., 2010; Kohannim et al., 2010).”
Self-citationArtificial Intelligence for Alzheimer’s Disease: Promise or Challenge?
Fabrizio, C., Termine, A., Caltagirone, C., & Sancesario, G. M. (2021) · Diagnostics · doi:10.3390/diagnostics11081473 · Cited by 156 · see citing works
Multi-modal cross-attention network for Alzheimer’s disease diagnosis with multi-modality data
Zhang, J., He, X., Liu, Y., Cai, Q., Chen, H., & Qing, L. (2023) · Computers in Biology and Medicine · doi:10.1016/j.compbiomed.2023.107050 · Cited by 117 · see citing works
A Roadmap for the Development of Applied Computational Psychiatry
Paulus, M., Huys, Q., & Maia, T. (2016) · Biological Psychiatry: Cognitive Neuroscience and Neuroimaging · doi:10.1016/j.bpsc.2016.05.001 · Cited by 108 · see citing works
“ML tools have found their way into the medical fi eld for a number of different applications, ranging from health care services (24) to clinical predictions of the progression of Alzheimer ’ s disease (25,26).”
BackgroundBrain connectivity and novel network measures for Alzheimer’s disease classification
Prasad, G., Joshi, S. H., Nir, T., Toga, A., & Thompson, P. M. (2014) · Neurobiology of Aging · doi:10.1016/j.neurobiolaging.2014.04.037 · Cited by 106 · see citing works
“Current approaches used to classify Alzheimer’s disease (Kohannim et al., 2010; Klöppel et al., 2008) rely on features such as volumetric measures from anatomical regions in magnetic resonance imaging (MRI) images of the brain, CSF biomarkers, ApoE genotype, age, sex, body mass index, and, in some…”
Self-citationShi, J., Thompson, P. M., Gutman, B. A., & Wang, Y. (2013) · NeuroImage · doi:10.1016/j.neuroimage.2013.04.018 · Cited by 90 · see citing works
“With multivariate features, it is natural to apply machine learning methods to perform computer-assisted diagnosis and predict future clinical decline (Kohannim et al., 2010; Sun et al., 2009a;Wang et al., 2010a).”
Self-citationFerreira, L. K., & Busatto, G. F. (2011) · Clinics · doi:10.1590/s1807-59322011001300003 · Cited by 102 · see citing works
“demographic data, structural and functional neuroimaging, genotyping information and laboratory results, such as cerebrospinal fluid biomarkers) in order to improve successful classification.(61)”
Structured sparsity regularized multiple kernel learning for Alzheimer’s disease diagnosis
Peng, J., Zhu, X., Wang, Y., An, L., & Shen, D. G. (2018) · Pattern Recognition · doi:10.1016/j.patcog.2018.11.027 · Cited by 107 · see citing works
“A straightforward way to fusion multimodality data is to pool features from multiple modalities together [33,34], and then feed them to train a classifier.”
BackgroundMachine learning and modeling: Data, validation, communication challenges
Naqa, I. E., Ruan, D., Valdés, G., Dekker, A. L. A. J., McNutt, T., Ge, Y., Wu, Q., Oh, J. H., Thor, M., Smith, W. P., et al. (2018) · Medical Physics · doi:10.1002/mp.12811 · Cited by 104 · see citing works
“• Conducting clinical trials using ML algorithms as a guidance for optimal treatment strategies.(45)”
Rallabandi, V. P. S., & Seetharaman, K. (2022) · Biomedical Signal Processing and Control · doi:10.1016/j.bspc.2022.104312 · Cited by 82 · see citing works
Deep Radiomic Analysis of MRI Related to Alzheimer’s Disease
Chaddad, A., Desrosiers, C., & Niazi, T. M. (2018) · IEEE Access · doi:10.1109/access.2018.2871977 · Cited by 96 · see citing works
“A variety of studies have been proposed to characterize and predict AD [5], [7]–[13] with the most important biomarkers detected as brain volume and thickness.”
BackgroundUnbiased comparison of sample size estimates from longitudinal structural measures in ADNI
Holland, D., McEvoy, L. K., Dale, A. M., & Initiative, T. A. D. N. (2011) · Human Brain Mapping · doi:10.1002/hbm.21386 · Cited by 83 · see citing works
“…for neuroimaging outcome measures make this assumption implicitly [Beckett et al., 2010; Cummings, 2010; Ho et al., 2010; Hua et al., 2009, 2010; Kohannim et al., 2010; Lorenzi et al., 2010; Nestor et al., 2008; Risacher et al., 2010; Schuff et al., 2009; Vemuri et al., 2010], with a few…”
BackgroundMethodInfluentialHormone Replacement Therapy and Risk for Neurodegenerative Diseases
Dye, R. V., Miller, K. J., Singer, E. J., & Levine, A. J. (2012) · International Journal of Alzheimer s Disease · doi:10.1155/2012/258454 · Cited by 96 · see citing works
“The identification of MCI as a possible prodrome to AD, as well as the recent development classifier algorithms that assess later risk for AD based on a variety of clinical factors [10], leaves open the potential for initiating therapies, including HRT, that may prevent progression to AD in those at risk.”
BackgroundPan, Y., Liu, M.-X., Lian, C., Xia, Y., & Shen, D. (2020) · IEEE Transactions on Medical Imaging · doi:10.1109/tmi.2020.2983085 · Cited by 87 · see citing works
“Kohannim et al. [26] verified that directly concatenating multi-modal (MRI, PET, and cerebrospinal fluid) features results in better performance than using solely single-modal features.”
Accurate measurement of brain changes in longitudinal MRI scans using tensor-based morphometry
Hua, X., Gutman, B. A., Boyle, C. P., Rajagopalan, P., Leow, A., Yanovsky, I., Kumar, A., Toga, A. W., Jack, C. R., Schuff, N. W., et al. (2011) · NeuroImage · doi:10.1016/j.neuroimage.2011.01.079 · Cited by 80 · see citing works
“In addition, there is reference to sKL-derived power estimates in Kohannim et al. (2010) and Ho et al.”
InfluentialSelf-citationLista, S., Garaci, F., Ewers, M., Teipel, S. J., Zetterberg, H., Blennow, K., & Hampel, H. J. (2013) · Alzheimer s & Dementia · doi:10.1016/j.jalz.2013.04.506 · Cited by 76 · see citing works
“HC subjects [113] or an MCI subject who converted to AD dementia versus MCI subjects remaining stable [114].”
BackgroundInfluentialLei, B., Chen, S., Ni, D., & Wang, T. (2016) · Frontiers in Aging Neuroscience · doi:10.3389/fnagi.2016.00077 · Cited by 72 · see citing works
Bias in tensor based morphometry Stat-ROI measures may result in unrealistic power estimates
Thompson, W., & Holland, D. (2011) · NeuroImage · doi:10.1016/j.neuroimage.2010.11.092 · Cited by 78 · see citing works
“…publications using tensor based morphometry (TBM) measures of longitudinal change estimated from structural MRI available through the Alzheimer's Disease Neuroimaging Initiative (ADNI): Hua et al. (2008a,b, 2009, 2010); Ho et al. (2010); Kohannim et al. (2010); Beckett et al. (2010); among others.”
MethodAdvancing Alzheimer’s research: a review of big data promises
Zhang, R., Simon, G., & Yu, F. (2017) · International Journal of Medical Informatics · doi:10.1016/j.ijmedinf.2017.07.002 · Cited by 77 · see citing works
“combined brain imaging and other biomarkers to classify ADNI subjects as AD, MCI and NC (27).”
BackgroundGutman, B., Hua, X., Rajagopalan, P., Chou, Y., Wang, Y.-L., Yanovsky, I., Toga, A., Jack, C., Weiner, M., & Thompson, P. (2013) · NeuroImage · doi:10.1016/j.neuroimage.2012.12.052 · Cited by 76 · see citing works
Self-citationApplying tensor-based morphometry to parametric surfaces can improve MRI-based disease diagnosis
Wang, Y., Yuan, L., Shi, J., Greve, A., Ye, J., Toga, A. W., Reiss, A. L., & Thompson, P. M. (2013) · NeuroImage · doi:10.1016/j.neuroimage.2013.02.011 · Cited by 72 · see citing works
“, 2011), single photon emitting computer tomography (SPECT) (Fung and Stoeckel, 2007) or a combination of multi-source datasets (Calhoun and Adali, 2009; Chen et al., 2009; Correa et al., 2010; Groves et al., 2011; Jack et al., 2010; Kohannim et al., 2010; Sui et al., 2011; Yang et al., 2010; Yuan et al., 2012a).”
BackgroundMethodSelf-citationLeveraging Coupled Interaction for Multimodal Alzheimer’s Disease Diagnosis
Shi, Y., Suk, H., Gao, Y., Lee, S., & Shen, D. G. (2019) · IEEE Transactions on Neural Networks and Learning Systems · doi:10.1109/tnnls.2019.2900077 · Cited by 71 · see citing works
“[8] used the support vector machine (SVM) as a classifier on the concatenated features obtained from multiple biomarkers.”
MethodSelf-citationMultimodal learning using convolution neural network and Sparse Autoencoder
Vu, T., Yang, H.-J., Nguyen, V. Q., Oh, A., & Kim, M.-S. (2017) · International Conference on Big Data and Smart Computing · doi:10.1109/bigcomp.2017.7881683 · Cited by 70 · see citing works
“Kohannim et al. [3] concatenated features from multiple modalities including MRI, PET, biological and neurological data into a vector and used a Support Vector Machine (SVM).”
MethodNeuroimaging Measures as Endophenotypes in Alzheimer′s Disease
Braskie, M. N., Ringman, J. M., & Thompson, P. M. (2011) · International Journal of Alzheimer s Disease · doi:10.4061/2011/490140 · Cited by 58 · see citing works
“In addition, the large number of statistical tests involved in a genome-wide and/or image wide search requires special methods to boost power, including gene-based tests [126], ridge regression models [127], multilocus modeling, and meta-analysis.”
BackgroundSelf-citationVu, T. D., Ho, N.-H., Yang, H.-J., Kim, J., & Song, H. (2018) · Soft Computing · doi:10.1007/s00500-018-3421-5 · Cited by 66 · see citing works
“A concatenation of features from multiple modalities including MRI, PET, biological and neurological data into a vector (Kohannim et al. 2010) used an SVM as classifier.”
Nonlinear dimensionality reduction combining MR imaging with non-imaging information
Wolz, R., Aljabar, P., Hajnal, J. V., Lötjönen, J. M. P., & Rueckert, D. (2011) · Medical Image Analysis · doi:10.1016/j.media.2011.12.003 · Cited by 56 · see citing works
Alliance for aging research AD biomarkers work group: structural MRI
Jack, C. R. (2011) · Neurobiology of Aging · doi:10.1016/j.neurobiolaging.2011.09.011 · Cited by 64 · see citing works
“(Kohannim et al., 2010) CN 213, AD 158 Referral sample ADNI Multi voxel classifier AUROC 0.”
InfluentialSelf-citationPrediction of Alzheimer's disease using hybrid machine learning technique
Kumar, M. S., Azath, H., Velmurugan, A. K., Padmanaban, K., & Subbiah, M. (2023) · AIP Conference Proceedings · doi:10.1063/5.0110283 · Cited by 64
Chen, G., Zhang, H., Xie, C., Chen, G., Zhang, Z., Teng, G., & Li, S. (2013) · Frontiers in Human Neuroscience · doi:10.3389/fnhum.2013.00456 · Cited by 63 · see citing works
Early diagnosis of Alzheimer's disease using machine learning techniques: A review paper
Khan, A., & Usman, M. (2015) · International Joint Conference on Knowledge Discovery, Knowledge Engineering and Knowledge Management · doi:10.5220/0005615203800387 · Cited by 60 · see citing works
Ithapu, V. K., Singh, V., Okonkwo, O. C., Chappell, R. J., Dowling, N. M., Johnson, S. C., & Initiative, A. D. N. (2015) · Alzheimer s & Dementia · doi:10.1016/j.jalz.2015.01.010 · Cited by 63 · see citing works
“That is, hippocampal volume has been used extensively in previous AD imaging studies [14,16,25,26], and including it ensures continuity with this literature.”
The Alzheimer's Disease Neuroimaging Initiative: A review of papers published since its inception
Weiner, M. W., Veitch, D. P., Aisen, P. S. S., Beckett, L. A., Cairns, N. J., Green, R. C., Harvey, D. J., Jack, C. R., Jagust, W. J., Liu, E., et al. (2013) · Alzheimer s & Dementia · doi:10.1016/j.jalz.2013.05.1769 · Cited by 1,011 · see citing works
“Subject selection by multiple biomarker classifier ,40 (,40) [86]”
InfluentialSelf-citationGrill, J. D., Di, L., Lu, P. H., Lee, C., Ringman, J., Apostolova, L. G., Chow, N., Kohannim, O., Cummings, J. L., Thompson, P. M., et al. (2013) · Neurobiology of Aging · doi:10.1016/j.neurobiolaging.2012.03.006 · Cited by 58 · see citing works
“Using AD biomarkers as outcome measures in AD trials can similarly improve trial efficiency [9,27,28,31,35,57,59].”
Self-citationImproved Classification of Alzheimer's Disease Data via Removal of Nuisance Variability
Koikkalainen, J., Pölönen, H., Mattila, J., van Gils, M., Soininen, H., & Lötjönen, J. (2012) · PLoS ONE · doi:10.1371/journal.pone.0031112 · Cited by 58 · see citing works
“In some studies, the nuisance features are given as ordinary variables to the classifier, such as support vector machine, and it is assumed that the classifier is able to correct the interactions between nuisance features and classification features [13].”
BackgroundPredicting long‐term clinical stability in amyloid‐positive subjects by FDG‐PET
Iaccarino, L., Sala, A., & Perani, D. (2019) · Annals of Clinical and Translational Neurology · doi:10.1002/acn3.782 · Cited by 56 · see citing works
The power of neuroimaging biomarkers for screening frontotemporal dementia
McMillan, C. T., Avants, B., Cook, P. A., Ungar, L., Trojanowski, J. Q., & Grossman, M. (2014) · Human Brain Mapping · doi:10.1002/hbm.22515 · Cited by 54 · see citing works
Apostolova, L. G., Hwang, K., Omid Kohannim, A., Avila, D., Elashoff, D. A., Jack, C. R., Shaw, L. M. J., Trojanowski, J. Q., Weiner, M. W., & Thompson, P. M. (2014) · NeuroImage Clinical · doi:10.1016/j.nicl.2013.12.012 · Cited by 56 · see citing works
“Many groups including ours have made important strides towards multimodal biomarker diagnostic discrimination (Cui et al., 2011; Davatzikos et al., 2011; Ewers et al., 2012; Kohannim et al., 2010; Vos et al., 2012; Walhovd et al., 2010; Westman et al., 2012).”
MethodSelf-citationMulti-source learning for joint analysis of incomplete multi-modality neuroimaging data
Yuan, L., Wang, Y., Thompson, P. M., Narayan, V. A., & Ye, J. (2012) · ACM SIGKDD Conference on Knowledge Discovery and Data Mining (KDD) · doi:10.1145/2339530.2339710 · Cited by 53 · see citing works
“1.”
Self-citationLiu, Y., Yue, L., Xiao, S., Yang, W., Shen, D. G., & Liu, M. (2021) · Medical Image Analysis · doi:10.1016/j.media.2021.102266 · Cited by 59 · see citing works
Kim, J., & Lee, B. (2018) · Human Brain Mapping · doi:10.1002/hbm.24207 · Cited by 54 · see citing works
“For example, Kohannim et al. (2010) concatenated the features extracted from various modalities into a vector and classified it using support vector machine (SVM) (Kohannim et al., 2010).”
MethodZhang, T., Zhao, Z., Zhang, C., Zhang, J., Jin, Z., & Li, L. (2019) · Frontiers in Psychiatry · doi:10.3389/fpsyt.2019.00572 · Cited by 57 · see citing works
“(1) For signal stabilization and to allow the participants to adapt to the environment, the first 10 EPI volumes of the fMRI images were discarded.”
BackgroundNeuroimaging and the Search for a Cure for Alzheimer Disease
Petrella, J. R. (2013) · Radiology · doi:10.1148/radiol.13122503 · Cited by 47 · see citing works
Thung, K., Chong-yaw Wee, A., Yap, P., & Shen, D. G. (2015) · Brain Structure and Function · doi:10.1007/s00429-015-1140-6 · Cited by 45 · see citing works
Artificial intelligence for dementia drug discovery and trials optimization
Doherty, T., Yao, Z., Khleifat, A. A. L., Tantiangco, H., Tamburin, S., Albertyn, C., Thakur, L., Llewellyn, D. J., Oxtoby, N. P., Lourida, I., et al. (2023) · Alzheimer's & Dementia · doi:10.1002/alz.13428 · Cited by 48 · see citing works
“This 71–73 Enriching cohorts with subjects who are at the correct stage for each individual compound can be achieved by fundamentally categorizing based upon biomarkers that relate to homogenous staging and prospective endpoint declines.”
A Focus on Structural Brain Imaging in the Alzheimer’s Disease Neuroimaging Initiative
Braskie, M. N., & Thompson, P. M. (2013) · Biological Psychiatry · doi:10.1016/j.biopsych.2013.11.020 · Cited by 51 · see citing works
Self-citationNeuroimaging Results Impose New Views on Alzheimer’s Disease—the Role of Amyloid Revised
Fjell, A. M., & Walhovd, K. B. (2011) · Molecular Neurobiology · doi:10.1007/s12035-011-8228-7 · Cited by 47 · see citing works
“Although discrepant findings exist, several studies show that MRI biomarkers are more accurate predictors of cognitive function and clinical change in MCI than CSF measures of amyloid [74, 76, 78–81].”
ResultSanchez-Catasus, C., Stormezand, G., van Laar, P. V., de Deyn, P., Sanchez, M. A., & Dierckx, R. (2017) · Current Alzheimer Research · doi:10.2174/1567205013666160629081956 · Cited by 47 · see citing works
“There are other recent studies that have developed new methodologies to improve prediction accuracy based on machine learning tools combining information from FDG-PET, sMRI and other biomarkers [83, 89-95].”
BackgroundLiu, F., Yuan, S., Li, W., Xu, Q. J., & Sheng, B. (2022) · Biomedical Signal Processing and Control · doi:10.1016/j.bspc.2022.104400 · Cited by 45 · see citing works
A review of brain imaging biomarker genomics in Alzheimer’s disease: implementation and perspectives
Li, L., Yu, X., Sheng, C., Jiang, X., Zhang, Q., Han, Y., & Jiang, J. (2022) · Translational Neurodegeneration · doi:10.1186/s40035-022-00315-z · Cited by 40 · see citing works
“[156] selected a SVM model and performed leave-oneout CV for AD and MCI classification and prediction of future cognitive decline within 1 year, and achieved a maximum of 90% accuracy for AD vs healthy controls.”
MethodUnderstanding cognitive deficits in Alzheimer's disease based on neuroimaging findings
Braskie, M. N., & Thompson, P. M. (2013) · Trends in Cognitive Sciences · doi:10.1016/j.tics.2013.08.007 · Cited by 44 · see citing works
Self-citationStomrud, E., Minthon, L., Zetterberg, H., Blennow, K., & Hansson, O. (2015) · Alzheimer s & Dementia Diagnosis Assessment & Disease Monitoring · doi:10.1016/j.dadm.2015.09.002 · Cited by 43 · see citing works
“The combination with one or preferably several markers that reflects brain dysfunction or neurodegeneration has been suggested [33,34], such as with regional brain atrophy [35,36], regional cerebral hypoperfusion [37,38], decreased regional glucose metabolism [36,39], or altered cortical connectivity (through resting…”
BackgroundSubclass-based multi-task learning for Alzheimer's disease diagnosis
Suk, H., Lee, S., & Shen, D. G. (2014) · Frontiers in Aging Neuroscience · doi:10.3389/fnagi.2014.00168 · Cited by 41 · see citing works
Self-citationEnrichment of clinical trials in MCI due to AD using markers of amyloid and neurodegeneration
Wolz, R., Schwarz, A. J., Gray, K. R., Yu, P., Hill, D., & Initiative, A. D. N. (2016) · Neurology · doi:10.1212/wnl.0000000000003126 · Cited by 45 · see citing works
An, L., Adeli, E., Liu, M., Zhang, J., Lee, S., & Shen, D. G. (2017) · Scientific Reports · doi:10.1038/srep45269 · Cited by 39 · see citing works
“Besides structural MRI, other imaging modalities such as functional MRI can also be used in AD/MCI diagnosis 19–23 , as they provide additional functional information about hypometabolism and specific protein quantification, which can be beneficial in disease diagnosis.”
MethodSelf-citationEscudero, J., Zajicek, J., & Ifeachor, E. (2011) · Annual International Conference of the IEEE Engineering in Medicine and Biology Society · doi:10.1109/iembs.2011.6091962 · Cited by 36 · see citing works
“zp is the value of the standard Gaussian distribution for P[Z < zp] = p [8].”
BackgroundMethodResultInfluentialEarly Indications of Future Cognitive Decline: Stable versus Declining Controls
Rizk‐Jackson, A., Insel, P. S., Petersen, R. C., Aisen, P. S. S., Jack, C. R., & Weiner, M. W. (2013) · PLoS ONE · doi:10.1371/journal.pone.0074062 · Cited by 33 · see citing works
“A variety of measures have proven capable of distinguishing MCI from cognitively normal individuals, including clinical evaluation [9,10], neuroimaging [9,11–19], and biochemical [16,19] measures.”
BackgroundSelf-citationMachine learning algorithms to classify spinal muscular atrophy subtypes
Srivastava, T., Darras, B. T., Wu, J. S., & Rutkove, S. B. (2012) · Neurology · doi:10.1212/wnl.0b013e3182604395 · Cited by 38 · see citing works
Zhang, M., Sun, L., Kong, Z., Zhu, W., Yi, Y., & Yan, F. (2023) · Biomedical Signal Processing and Control · doi:10.1016/j.bspc.2023.105652 · Cited by 30 · see citing works
Singh, N., Wang, A. Y., Sankaranarayanan, P., Fletcher, P., & Joshi, S. (2012) · International Conference on Medical Image Computing and Computer-Assisted Intervention · doi:10.1007/978-3-642-33415-3_17 · Cited by 32 · see citing works
“al [4] combine FDG-PET-derived numerical summaries, MRI-derived volume measures, CSF biomarkers, APOE genotype, and subject demographics for the task of discriminating MCI from AD.”
BackgroundMethodJoint Coupled-Feature Representation and Coupled Boosting for AD Diagnosis
Shi, Y.-H., Suk, H.-I., Gao, Y., & Shen, D. (2014) · 2014 IEEE Conference on Computer Vision and Pattern Recognition · doi:10.1109/cvpr.2014.354 · Cited by 31
“In this paper, we denote matrices as boldface uppercase letters, vectors as boldface lowercase letters, and scalars as normal italic letters, respectively.”
MethodMezzi, R., Yahyaoui, A., Krir, M. W., Boulila, W., & Koubâa, A. (2022) · Sensors · doi:10.3390/s22030846 · Cited by 29 · see citing works
“For example, support vector machines [40] is used for the analysis, classification, and recognition of Parkinson’s [41] and Alzheimer’s diseases [42].”
MethodGuo, S., Lai, C., Wu, C., Cen, G., & Initiative, T. A. D. N. (2017) · Frontiers in Aging Neuroscience · doi:10.3389/fnagi.2017.00146 · Cited by 30 · see citing works
“…the combined role of different biomarkers such as CSF and MRI markers (Davatzikos et al., 2011; Westman et al., 2012), 18 F-FDG and 11C-PIB-PET (Zhang et al., 2012), MRI measures, PET-FDG numerical summary, CSF biomarkers (t-tau, p-tau, and A β 42), and APOE genotype (Kohannim et al., 2010).”
Recent Advances in Imaging Alzheimer's Disease
Braskie, M. N., Toga, A. W., & Thompson, P. M. (2012) · Journal of Alzheimer s Disease · doi:10.3233/jad-2012-129016 · Cited by 25 · see citing works
“healthy elderly controls [78].”
Self-citationDelay and Probability Discounting as Candidate Markers for Dementia: An Initial Investigation
Lindbergh, C. A., Puente, A. N., Gray, J. C., MacKillop, J. M., & Miller, L. S. (2014) · Archives of Clinical Neuropsychology · doi:10.1093/arclin/acu043 · Cited by 27 · see citing works
Empowering Imaging Biomarkers of Alzheimer’s Disease
Gutman, B., Wang, Y.-L., Yanovsky, I., Hua, X., Toga, A., Jack, C., Weiner, M., & Thompson, P. (2014) · Neurobiology of Aging · doi:10.1016/j.neurobiolaging.2014.05.038 · Cited by 28 · see citing works
“Although many studies have used machine learning to predict the progression of neurodegenerative diseases and differentiate diagnostic groups such as AD, MCI, and controls (Kloppel et al., 2012; Kohannim et al., 2010; Vemuri et al., 2008), we found no attempts in the literature that used learning to directly optimize…”
BackgroundSelf-citationMultilocus genetic profiling to empower drug trials and predict brain atrophy
Omid Kohannim, A., Hua, X., Rajagopalan, P., Hibar, D. P., Jahanshad, N., Grill, J. D., Apostolova, L. G., Toga, A. W., Jack, C. R., Weiner, M. W., et al. (2013) · NeuroImage Clinical · doi:10.1016/j.nicl.2013.05.007 · Cited by 23 · see citing works
“Multivariate methods can also combine multiple biomarkers to select subjects more likely to show detectable change in hypothetical AD trials (Kohannim et al., 2010). served.”
InfluentialSelf-citationMultimodal Self-Paced Locality-Preserving Learning for Diagnosis of Alzheimer’s Disease
Hao, X., Wang, R., Guo, Y., Xiao, Y., Yu, M., Wang, M., Chen, W., & Zhang, D. (2022) · IEEE Transactions on Cognitive and Developmental Systems · doi:10.1109/tcds.2022.3189701 · Cited by 33 · see citing works
“[48] directly concatenated features of multimodal data into a long vector and then used SVM for AD classification.”
Method
- Authors
- Kohannim, O., Hua, X., Hibar, D. P., Lee, S., Chou, Y.-Y., Toga, A. W., Jack, C. R., Weiner, M. W., & Thompson, P. M.
- Affiliations
- University of California, Los Angeles (US)
- Mayo Clinic (US)
- University of California, San Francisco (US)
- Corresponding author
- Thompson, Paul M.
- Venue
- Neurobiology of Aging
- Publisher
- Elsevier BV
- Published
- 2010-08
- Volume
- 31
- Issue
- 8
- Pages
- 1429-1442
- ISSN
- 0197-4580 (ISSN-L)
- PMC
- PMC2903199
- OpenAlex
- W2167638846
- Cited by
- 190
- References
- 74
- Citations by year
- 2026: 4 · 2025: 7 · 2024: 6 · 2023: 13 · 2022: 11 · 2021: 6 · 2020: 11 · 2019: 11 · 2018: 11 · 2017: 10 · 2016: 9 · 2015: 13 · 2014: 19 · 2013: 22 · 2012: 10
- FWCI
- 12.31
- Type
- journal article
- Language
- en
- Open access
- green
- www.ncbi.nlm.nih.gov
- Locations
- Neurobiology of Aging (publishedVersion)
- PubMed (publishedVersion)
- PubMed Central (acceptedVersion)
- Funders
- Alzheimer's Drug Discovery Foundation
- Pfizer
- Merck
- University of Pennsylvania
- F. Hoffmann-La Roche
- Medpace
- National Institutes of Health (5u01ag024904-10)
- National Institute on Aging (U01-AG-024904, P30AG010129, K01AG030514, U19AG010483)
- National Institute of Biomedical Imaging and Bioengineering
- Topics
- Health Sciences › Medicine › Psychiatry and Mental health › Dementia and Cognitive Impairment Research
- Health Sciences › Medicine › Physiology › Alzheimer's disease research and treatments
- Health Sciences › Health Professions › Health Information Management › Artificial Intelligence in Healthcare
- Keywords
- Alzheimer's disease, mild cognitive impairment, support vector machine, combined biomarker detection, brain MRI, FDG-PET, cerebrospinal fluid biomarkers, amyloid-beta 42, APOE genotype, temporal lobe atrophy, computer-aided diagnosis, ADNI
- MeSH terms
- Age Factors, Aged, Aged, 80 and over, Alzheimer Disease, Artificial Intelligence, Cognition Disorders, Female, Genotype, Humans, Male, Sex Factors, Biomarkers, Randomized Controlled Trials as Topic, Apolipoprotein E4
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