Microbiota abnormalities in inflammatory airway diseases — Potential for therapy

Structure, function and diversity of the healthy human microbiome

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The human microbiome project

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The gut microbiota shapes intestinal immune responses during health and disease

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Molecular-phylogenetic characterization of microbial community imbalances in human inflammatory bowel diseases

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Induction of Intestinal Th17 Cells by Segmented Filamentous Bacteria

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Unravelling the pathogenesis of inflammatory bowel disease

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Gut Microbiota in Human Adults with Type 2 Diabetes Differs from Non-Diabetic Adults

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An Immunomodulatory Molecule of Symbiotic Bacteria Directs Maturation of the Host Immune System

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Inducible Foxp3 ⁺ regulatory T-cell development by a commensal bacterium of the intestinal microbiota

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Disordered Microbial Communities in Asthmatic Airways

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Exposure to Environmental Microorganisms and Childhood Asthma

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Exposure to farming in early life and development of asthma and allergy: a cross-sectional survey

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Analysis of Intestinal Flora Development in Breast-Fed and Formula-Fed Infants by Using Molecular Identification and Detection Methods

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Reduction in diversity of the colonic mucosa associated bacterial microflora in patients with active inflammatory bowel disease

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Topographical Continuity of Bacterial Populations in the Healthy Human Respiratory Tract

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Systematic review of intestinal microbiota transplantation (fecal bacteriotherapy) for recurrent Clostridium difficile infection

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Analysis of the lung microbiome in the “healthy” smoker and in COPD.

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The intestinal microflora in allergic Estonian and Swedish 2‐year‐old children

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Gut microbiome, obesity, and metabolic dysfunction

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VSL#3 Probiotic-Mixture Induces Remission in Patients with Active Ulcerative Colitis

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Airway microbiota and bronchial hyperresponsiveness in patients with suboptimally controlled asthma

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The Lung Tissue Microbiome in Chronic Obstructive Pulmonary Disease

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Epidemiology of COPD

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Double blind, placebo controlled trial of two probiotic strains in interleukin 10 knockout mice and mechanistic link with cytokine balance

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Airway Microbiota and Pathogen Abundance in Age-Stratified Cystic Fibrosis Patients

Cox, M. J., Allgaier, M., Taylor, B., Baek, M. S., Huang, Y. J., Daly, R. A., Karaöz, U., Andersen, G. L., Brown, R., Fujimura, K. E., et al. (2010) · PLoS ONE · doi:10.1371/journal.pone.0011044 · Cited by 448 · see citing works

Dysregulation of Allergic Airway Inflammation in the Absence of Microbial Colonization

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Collaborative JPEN‐Clinical Nutrition Scientific Publications Role of intestinal bacteria in nutrient metabolism

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The lung microbiome in moderate and severe chronic obstructive pulmonary disease

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Randomized placebo‐controlled trial assessing the effect of bifidobacteria‐fermented milk on active ulcerative colitis

Kato, K., Mizuno, S., Umesaki, Y., Ishii, Y., Sugitani, M., Imaoka, A., Otsuka, M., Hasunuma, O., Kurihara, R., Iwasaki, A., et al. (2004) · Alimentary Pharmacology & Therapeutics · doi:10.1111/j.1365-2036.2004.02268.x · Cited by 397 · see citing works

Treatment of Ulcerative Colitis Using Fecal Bacteriotherapy

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Long Term Prevention of Allergic Lung Inflammation in a Mouse Model of Asthma by CpG Oligodeoxynucleotides

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Lactobacillus plantarum 299V in the treatment and prevention of spontaneous colitis in interleukin-10-deficient mice

Schultz, M., Veltkamp, C., Dieleman, L. A., Grenther, W. B., Wyrick, P. B., Tonkonogy, S. L., & Sartor, R. B. (2002) · Inflammatory Bowel Diseases · doi:10.1097/00054725-200203000-00001 · Cited by 375 · see citing works

Breastfeeding and risk of inflammatory bowel disease: a systematic review with meta-analysis

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Lactobacillus reuteri –induced Regulatory T cells Protect against an Allergic Airway Response in Mice

Karimi, K., Inman, M. D., Bienenstock, J., & Forsythe, P. (2008) · American Journal of Respiratory and Critical Care Medicine · doi:10.1164/rccm.200806-951oc · Cited by 361 · see citing works

Serial Analysis of the Gut and Respiratory Microbiome in Cystic Fibrosis in Infancy: Interaction between Intestinal and Respiratory Tracts and Impact of Nutritional Exposures

Madan, J. C., Koestler, D. C., Stanton, B. A., Davidson, L. E., Moulton, L. A., Housman, M. L., Moore, J. H., Guill, M. F., Morrison, H. G., Sogin, M. L., et al. (2012) · mBio · doi:10.1128/mbio.00251-12 · Cited by 350 · see citing works

Lung-enriched Organisms and Aberrant Bacterial and Fungal Respiratory Microbiota after Lung Transplant

Charlson, E. S., Diamond, J. M., Bittinger, K., Fitzgerald, A. S., Yadav, A., Haas, A. R., Bushman, F. D., & Collman, R. G. (2012) · American Journal of Respiratory and Critical Care Medicine · doi:10.1164/rccm.201204-0693oc · Cited by 348 · see citing works

Probiotic‐induced suppression of allergic sensitization and airway inflammation is associated with an increase of T regulatory‐dependent mechanisms in a murine model of asthma

Feleszko, W., Jaworska, J., Rha, R.-D., Steinhausen, S., Avagyan, A., Jaudszus, A., Ahrens, B., Groneberg, D. A., Wahn, U., & Hamelmann, E. H. (2006) · Clinical & Experimental Allergy · doi:10.1111/j.1365-2222.2006.02629.x · Cited by 339 · see citing works

Oral Treatment with Live Lactobacillus reuteri Inhibits the Allergic Airway Response in Mice

Forsythe, P., Inman, M. D., & Bienenstock, J. (2007) · American Journal of Respiratory and Critical Care Medicine · doi:10.1164/rccm.200606-821oc · Cited by 306 · see citing works

Does the use of antibiotics in early childhood increase the risk of asthma and allergic disease?

Droste, J. H. J., Wieringa, M. H., Weyler, J., Nelen, V., Vermeire, P. A., & Bever, H. P. V. (2000) · Clinical & Experimental Allergy · doi:10.1046/j.1365-2222.2000.00939.x · Cited by 288 · see citing works

Protective effect of fruits, vegetables and the Mediterranean diet on asthma and allergies among children in Crete

Chatzi, L., Apostolaki, G., Bibakis, I., Skypala, I. J., Bibaki‐Liakou, V., Tzanakis, Ν., Kogevinas, M., & Cullinan, P. (2007) · Thorax · doi:10.1136/thx.2006.069419 · Cited by 287 · see citing works

Breast-feeding reduces the risk of asthma during the first 4 years of life

Kull, I., Almqvist, C., Lilja, G., Pershagen, G., & Wickman, M. C. (2004) · Journal of Allergy and Clinical Immunology · doi:10.1016/j.jaci.2004.07.036 · Cited by 280 · see citing works

Probiotic Potential of 3 Lactobacilli Strains Isolated From Breast Milk

Martı́n, R., Olivares, M. M., Marín, M. L., Fernández, L., Xaus, J., & Rodríguez, J. M. (2005) · Journal of Human Lactation · doi:10.1177/0890334404272393 · Cited by 279 · see citing works

Differences in Bifidobacterium flora composition in allergic and healthy infants

Ouwehand, A. C., Isolauri, E., He, F., Hashimoto, H., Benno, Y., & Salminen, S. (2001) · Journal of Allergy and Clinical Immunology · doi:10.1067/mai.2001.115754 · Cited by 277 · see citing works

Breast Milk: A Source of Bifidobacteria for Infant Gut Development and Maturation?

Gueimonde, M., Laitinen, K., Salminen, S., & Isolauri, E. (2007) · Neonatology · doi:10.1159/000100088 · Cited by 273 · see citing works

Breast feeding and allergic diseases in infants--a prospective birth cohort study

Kull, I. (2002) · Archives of Disease in Childhood · doi:10.1136/adc.87.6.478 · Cited by 268 · see citing works

Partitioning core and satellite taxa from within cystic fibrosis lung bacterial communities

Gast, C., Walker, A. W., Stressmann, F. A., Rogers, G. B., Scott, P., Daniels, T. W. V., Carroll, M. P., Parkhill, J., & Bruce, K. D. (2010) · The ISME Journal · doi:10.1038/ismej.2010.175 · Cited by 265 · see citing works

Oral oligofructose‐enriched inulin supplementation in acute ulcerative colitis is well tolerated and associated with lowered faecal calprotectin

Casellas, F., Borruel, N., Torrejón, A., Varela, E., Antolı́n, M., Guarner, F., & Malagelada, J. (2007) · Alimentary Pharmacology & Therapeutics · doi:10.1111/j.1365-2036.2007.03288.x · Cited by 260 · see citing works

Microflora‐associated characteristics in faeces from allergic and nonallergic infants

Böttcher, M. F., Nordin, E. K., Sandin, A., Midtvedt, T., & Björkstén, B. (2000) · Clinical & Experimental Allergy · doi:10.1046/j.1365-2222.2000.00982.x · Cited by 256 · see citing works

Durable Alteration of the Colonic Microbiota by the Administration of Donor Fecal Flora

Grehan, M., Borody, T. J., Leis, S., Campbell, J., Mitchell, H. M., & Wettstein, A. R. (2010) · Journal of Clinical Gastroenterology · doi:10.1097/mcg.0b013e3181e5d06b · Cited by 253 · see citing works

No effect of oral treatment with an intestinal bacterial strain, Lactobacillus rhamnosus (ATCC 53103), on birch‐pollen allergy: a placebo‐controlled double‐blind study

Helin, T., Haahtela, S., & Haahtela, T. (2002) · Allergy · doi:10.1034/j.1398-9995.2002.1s3299.x · Cited by 245 · see citing works

Probiotic Lactobacillus -induced improvement in murine chronic inflammatory bowel disease is associated with the down-regulation of pro-inflammatory cytokines in lamina propria mononuclear cells

Matsumoto, S., Hara, T., Hori, T., Mitsuyama, K., Nagaoka, M., Tomiyasu, N., Suzuki, A., & Sata, M. (2005) · Clinical & Experimental Immunology · doi:10.1111/j.1365-2249.2005.02790.x · Cited by 224 · see citing works

A Randomized Prospective Double Blind Controlled Trial on Effects of Long-Term Consumption of Fermented Milk Containing Lactobacillus casei in Pre-School Children With Allergic Asthma and/or Rhinitis

Giovannini, M., Agostoni, C. V., Riva, E., Salvini, F. M., Ruscitto, A., Zuccotti, G., & Radaelli, G. (2007) · Pediatric Research · doi:10.1203/pdr.0b013e3180a76d94 · Cited by 214 · see citing works

Randomized placebo‐controlled trial of lactobacillus on asthmatic children with allergic rhinitis

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Intestinal inflammation is a frequent feature of cystic fibrosis and is reduced by probiotic administration

Bruzzese, E., Raia, V., Gaudiello, G., Polito, G., Buccigrossi, V., Formicola, V., & Guarino, A. (2004) · Alimentary Pharmacology & Therapeutics · doi:10.1111/j.1365-2036.2004.02174.x · Cited by 195 · see citing works

Treatment of ulcerative colitis by feeding with germinated barley foodstuff: first report of a multicenter open control trial

Kanauchi, O., Suga, T., Tochihara, M., Hibi∥, T., Naganuma, M., Homma, T., Asakura, H., Nakano, H., Takahama, K., Fujiyama, Y., et al. (2002) · Journal of Gastroenterology · doi:10.1007/bf03326417 · Cited by 194 · see citing works

Treatment of perennial allergic rhinitis with lactic acid bacteria

Wang, M. F., Lin, H. C., Wang, Y. Y., & Hsu, C. H. (2004) · Pediatric Allergy and Immunology · doi:10.1111/j.1399-3038.2004.00156.x · Cited by 193 · see citing works

Clinical Effects of Lactobacillus acidophilus Strain L-92 on Perennial Allergic Rhinitis: A Double-Blind, Placebo-Controlled Study

Ishida, Y., Nakamura, F., Kanzato, H., Sawada, D., Hirata, H., Nishimura, A., Kajimoto, O., & Fujiwara, S. (2005) · Journal of Dairy Science · doi:10.3168/jds.s0022-0302(05)72714-4 · Cited by 193 · see citing works

Lung transplant outcomes: a review of survival, graft function, physiology, health-related quality of life and cost-effectiveness

Studer, S. M., Levy, R. D., McNeil, K., & Orens, J. B. (2004) · European Respiratory Journal · doi:10.1183/09031936.04.00065004 · Cited by 188 · see citing works

Effects of a dietary and environmental prevention programme on the incidence of allergic symptoms in high atopic risk infants: three years follow‐up

Marini, A., Agosti, M. A., Motta, G., & Mosca, F. (1996) · Acta Paediatrica · doi:10.1111/j.1651-2227.1996.tb14267.x · Cited by 185 · see citing works

Prevalence of Streptococci and Increased Polymicrobial Diversity Associated with Cystic Fibrosis Patient Stability

Filkins, L., Hampton, T. H., Gifford, A. H., Gross, M. J., Hogan, D. A., Sogin, M. L., Morrison, H. G., Paster, B. J., & O’Toole, G. A. (2012) · Journal of Bacteriology · doi:10.1128/jb.00566-12 · Cited by 182 · see citing works

Germinated barley foodstuff prolongs remission in patients with ulcerative colitis

Hanai, H., Kanauchi, O., Mitsuyama, K., Andoh, A., Takeuchi, K., Iida, T., Araki, Y., Fujiyama, Y., Toyonaga, A., Sata, M., et al. (2004) · International Journal of Molecular Medicine · doi:10.3892/ijmm.13.5.643 · Cited by 166 · see citing works

Effect of Lactobacillus GG supplementation on pulmonary exacerbations in patients with cystic fibrosis: A pilot study

Bruzzese, E., Raia, V., Spagnuolo, M. I., Volpicelli, M., Marco, G. D., Maiuri, L., & Guarino, A. (2007) · Clinical Nutrition · doi:10.1016/j.clnu.2007.01.004 · Cited by 162 · see citing works

Immune and Clinical Impact of Lactobacillus acidophilus on Asthma

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Dietary fibres as “prebiotics”: Implications for colorectal cancer

Lim, C. C., Ferguson, L. R., & Tannock, G. W. (2005) · Molecular Nutrition & Food Research · doi:10.1002/mnfr.200500015 · Cited by 160 · see citing works

Reestablishment of Recipient-associated Microbiota in the Lung Allograft Is Linked to Reduced Risk of Bronchiolitis Obliterans Syndrome

Willner, D. L., Hugenholtz, P., Yerkovich, S. T., Tan, M. E., Daly, J. N., Lachner, N., Hopkins, P. M.-A., & Chambers, D. C. (2013) · American Journal of Respiratory and Critical Care Medicine · doi:10.1164/rccm.201209-1680oc · Cited by 144 · see citing works

Oral delivery of Lactobacillus casei Shirota modifies allergen‐induced immune responses in allergic rhinitis

Ivory, K., Chambers, S. J., Pin, C., Prieto, E., Arqués, J. L., & Nicoletti, C. (2008) · Clinical & Experimental Allergy · doi:10.1111/j.1365-2222.2008.03025.x · Cited by 144 · see citing works

Treatment of ulcerative colitis patients by long-term administration of germinated barley foodstuff: Multi-center open trial

Kanauchi, O., Mitsuyama, K., Homma, T., Takahama, K., Fujiyama, Y., Andoh, A., Araki, Y., Toshihiro, S., Hibi∥, T., Naganuma, M., et al. (2003) · International Journal of Molecular Medicine · doi:10.3892/ijmm.12.5.701 · Cited by 137 · see citing works

Synbiotics reduce allergen-induced T-helper 2 response and improve peak expiratory flow in allergic asthmatics

van de Pol, M. A., Lutter, R., Smids, B., Weersink, E. J. M., & van der Zee, J. S. (2010) · Allergy · doi:10.1111/j.1398-9995.2010.02454.x · Cited by 132 · see citing works

Increased growth of Bifidobacterium and Eubacterium by germinated barley foodstuff, accompanied by enhanced butyrate production in healthy volunteers.

Kanauchi, O., Fujiyama, Y., Mitsuyama, K., Araki, Y., Ishii, T., Nakamura, T., Hitomi, Y., Agata, K., Saiki, T., Andoh-Odoom, A. H., et al. (1999) · International Journal of Molecular Medicine · doi:10.3892/ijmm.3.2.175 · Cited by 124 · see citing works

Galectin‐9 induced by dietary synbiotics is involved in suppression of allergic symptoms in mice and humans

de Kivit, S., Saeland, E., Kraneveld, A. D., van de Kant, H. J. G., Schouten, B., van Esch, B. C. A. M., Knol, J., Sprikkelman, A. B., van der Aa, L. B., Knippels, L. M. J., et al. (2012) · Allergy · doi:10.1111/j.1398-9995.2011.02771.x · Cited by 124 · see citing works

Inulin and fructo-oligosaccharides have divergent effects on colitis and commensal microbiota in HLA-B27 transgenic rats

Koleva, P. T., Valcheva, R. S., Sun, X., Gänzle, M. G., & Dieleman, L. A. (2012) · British Journal Of Nutrition · doi:10.1017/s0007114511007203 · Cited by 121 · see citing works

Germinated barley foodstuff, a prebiotic product, ameliorates inflammation of colitis through modulation of the enteric environment

Kanauchi, O., Serizawa, I., Araki, Y., Suzuki, A., Andoh, A., Fujiyama, Y., Mitsuyama, K., Takaki, K., Toyonaga, A., Sata, M., et al. (2003) · Journal of Gastroenterology · doi:10.1007/s005350300022 · Cited by 114 · see citing works

Asthma Prevention byLactobacillus Rhamnosusin a Mouse Model is Associated With CD4+CD25+Foxp3+T Cells

Jang, S.-O., Kim, H., Kim, Y., Kang, M., Kwon, J., Seo, J., Kim, H. Y., Kim, B., Yu, J., & Hong, S. (2012) · Allergy Asthma and Immunology Research · doi:10.4168/aair.2012.4.3.150 · Cited by 111 · see citing works

The airway microbiome in cystic fibrosis and implications for treatment

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Oral probiotic bacterial administration suppressed allergic responses in an ovalbumin-induced allergy mouse model

Hye-Young, K., Kwack, K., Kim, D. Y., & Ji, G. E. (2005) · FEMS Immunology & Medical Microbiology · doi:10.1016/j.femsim.2005.05.005 · Cited by 88 · see citing works

Longitudinal analysis of the lung microbiome in lung transplantation

Borewicz, K., Pragman, A. A., Kim, H. B., Hertz, M., Wendt, C. H., & Isaacson, R. E. (2012) · FEMS Microbiology Letters · doi:10.1111/1574-6968.12053 · Cited by 86 · see citing works

Components of Streptococcus pneumoniae Suppress Allergic Airways Disease and NKT Cells by Inducing Regulatory T Cells

Thorburn, A. N., Foster, P. S., Gibson, P. G., & Hansbro, P. M. (2012) · The Journal of Immunology · doi:10.4049/jimmunol.1101299 · Cited by 85 · see citing works

Bacterial-induced protection against allergic inflammation through a multicomponent immunoregulatory mechanism

Nembrini, C., Sichelstiel, A., Kisielow, J., Kurrer, M. O., Köpf, M., & Marsland, B. J. (2011) · Thorax · doi:10.1136/thx.2010.152512 · Cited by 84 · see citing works

Prebiotics and Synbiotics in Clinical Medicine

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A Longitudinal Analysis on the Association Between Antibiotic Use, Intestinal Microflora, and Wheezing During the First Year of Life

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Additional file 1 of Longitudinal lung function trajectories in response to azithromycin therapy for chronic lung disease in children with HIV infection: a secondary analysis of the BREATHE trial

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Additional file 2 of Longitudinal lung function trajectories in response to azithromycin therapy for chronic lung disease in children with HIV infection: a secondary analysis of the BREATHE trial

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