Cited by 1,529Asthma and respiratory diseasesIndoor Air Quality and Microbial ExposureAllergic Rhinitis and Sensitization

Exposure to Environmental Microorganisms and Childhood Asthma

Open access
Ege, Markus J., Mayer, Melanie, Normand, Anne-Cécile, Genuneit, Jon, Cookson, William O.C.M., Braun-Fahrländer, Charlotte, Heederik, Dick, Piarroux, Renaud +1 more·2011·New England Journal of Medicine

Abstract

BACKGROUND: Children who grow up in environments that afford them a wide range of microbial exposures, such as traditional farms, are protected from childhood asthma and atopy. In previous studies, markers of microbial exposure have been inversely related to these conditions. METHODS: In two cross-sectional studies, we compared children living on farms with those in a reference group with respect to the prevalence of asthma and atopy and to the diversity of microbial exposure. In one study--PARSIFAL (Prevention of Allergy-Risk Factors for Sensitization in Children Related to Farming and Anthroposophic Lifestyle)--samples of mattress dust were screened for bacterial DNA with the use of single-strand conformation polymorphism (SSCP) analyses to detect environmental bacteria that cannot be measured by means of culture techniques. In the other study--GABRIELA (Multidisciplinary Study to Identify the Genetic and Environmental Causes of Asthma in the European Community [GABRIEL] Advanced Study)--samples of settled dust from children's rooms were evaluated for bacterial and fungal taxa with the use of culture techniques. RESULTS: In both studies, children who lived on farms had lower prevalences of asthma and atopy and were exposed to a greater variety of environmental microorganisms than the children in the reference group. In turn, diversity of microbial exposure was inversely related to the risk of asthma (odds ratio for PARSIFAL, 0.62; 95% confidence interval [CI], 0.44 to 0.89; odds ratio for GABRIELA, 0.86; 95% CI, 0.75 to 0.99). In addition, the presence of certain more circumscribed exposures was also inversely related to the risk of asthma; this included exposure to species in the fungal taxon eurotium (adjusted odds ratio, 0.37; 95% CI, 0.18 to 0.76) and to a variety of bacterial species, including Listeria monocytogenes, bacillus species, corynebacterium species, and others (adjusted odds ratio, 0.57; 95% CI, 0.38 to 0.86). CONCLUSIONS: Children living on farms were exposed to a wider range of microbes than were children in the reference group, and this exposure explains a substantial fraction of the inverse relation between asthma and growing up on a farm. (Funded by the Deutsche Forschungsgemeinschaft and the European Commission.).

The claims and statistics of this paper haven’t been checked yet.

Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.

A few free checks a day · papers already verified open instantly · results are public

Integrity signals

Registry

Crossref · 10.1056/nejmoa1007302

Cites

1 of 1 references verified0 citation errors · 0 not checkable

Statistics

Claims the paper makes

The claims and statistics of this paper haven’t been checked yet.

Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.

A few free checks a day · papers already verified open instantly · results are public

Claims other papers make about this one

Each is checked against this paper’s own text: does it say what the citing paper says it does?

  • The biodiversity hypothesis highlights the role of natural environments in shaping the human microbiome, enhancing immune balance, and reducing inflammation-related diseases.

    “Similarly, the biodiversity hypothesis highlights the role of natural environments in shaping the human microbiome [38], enhancing immune balance, and reducing inflammation-related diseases [38,39,40].”

    From The Power of Environment: A Comprehensive Review of the Exposome's Role in Healthy Aging, Longevity, and Preventive Medicine-Lessons from Blue Zones and Cilento (2025) · cites this paper as [39]

    The Results and Discussion report that children on farms encountered more diverse environmental microorganisms and that this exposure was associated with lower asthma risk. The Discussion proposes immune regulation and altered airway colonization as possible mechanisms, but it does not establish that natural environments reshape the human microbiome or reduce inflammation-related diseases generally. (LLM, conf=0.86)

    Experimental — accuracy not yet measured
  • Mechanistically, farming and rural exposures are thought to exert effects on immune regulatory pathways essentially via microbial taxa, microbial metabolites and specific carrier-proteins like beta-lactoglobulin present in the stable environment and milk.

    “Mechanistically, these exposures are thought to exert effects on the immune regulatory pathways essentially via microbial taxa, microbial metabolites [22, 23, 24] and specific carrier‐proteins like beta‐lactoglobulin present in the stable environment and milk [25, 26].”

    From <scp>EAACI</scp> Guidelines on the Importance of Green Space in Urban Environments for Allergy and Asthma Prevention (2026) · cites this paper as [22]

    The Discussion (page not available in our copy) proposes that diverse farm-associated microorganisms may affect immune signaling pathways, including those leading to regulatory T cells. It does not identify microbial metabolites as mediators. The beta-lactoglobulin clause has separate citations [25, 26] and is not attributed to this paper. (LLM, conf=0.86)

    Experimental — accuracy not yet measured
  • The increased use of antibiotics and changes in dietary patterns in developed countries may lead to alterations in the composition of the intestinal microbiota and a higher risk of bronchial asthma.

    “Also, the increased use of antibiotics and changes in dietary patterns in developed countries, may lead to alterations in the composition of the intestinal microbiota and a higher risk of bronchial asthma [80][81][82] .”

Self-check

Percentages, sums and reported differences re-computed from the paper’s own numbers.

The self-check needs the paper’s full text.

Cites

Flagged first, then by citations

Research works printed but not linked: 26

  1. Vartiainen E, Petays T, Haahtela T, Jousilahti P, Pekkanen J. Allergic diseases, skin prick test responses, and IgE levels in North Karelia, Finland, and the Republic of Karelia, Russia. J Allergy Clin Immunol 2002;109:643-8.
  2. von Mutius E, Radon K. Living on a farm: impact on asthma induction and clinical course. Immunol Allergy Clin North Am 2008;28:631-47.
  3. Braun-Fahrländer C, Riedler J, Herz U, et al. Environmental exposure to endo- toxin and its relation to asthma in school- age children. N Engl J Med 2002;347:869- 77.
  4. van Strien RT, Engel R, Holst O, et al. Microbial exposure of rural school chil- dren, as assessed by levels of N-acetyl- muramic acid in mattress dust, and its as- sociation with respiratory health. J Allergy Clin Immunol 2004;113:860-7.
  5. Sordillo JE, Hoffman EB, Celedón JC, Litonjua AA, Milton DK, Gold DR. Multi- ple microbial exposures in the home may protect against asthma or allergy in child- hood. Clin Exp Allergy 2010;40:902-10.
  6. Alfvén T, Braun-Fahrländer C, Brune- kreef B, et al. Allergic diseases and atopic sensitization in children related to farm- ing and anthroposophic lifestyle -the PARSIFAL study. Allergy 2006;61:414-21.
  7. Schram-Bijkerk D, Doekes G, Douwes J, et al. Bacterial and fungal agents in house dust and wheeze in children: the PARSIFAL study. Clin Exp Allergy 2005; 35:1272-8.
  8. Korthals M, Ege M, Lick S, von Mutius E, Bauer J. Occurrence of Listeria spp. in mattress dust of farm children in Bavaria. Environ Res 2008;107:299-304.
  9. Korthals M, Ege MJ, Tebbe CC, von Mutius E, Bauer J. Application of PCR- SSCP for molecular epidemiological stud- ies on the exposure of farm children to bacteria in environmental dust. J Micro- biol Methods 2008;73:49-56.
  10. Noss I, Wouters IM, Visser M, et al. Evaluation of a low-cost electrostatic dust fall collector for indoor air endotoxin expo- sure assessment. Appl Environ Microbiol 2008;74:5621-7.
  11. Normand AC, Vacheyrou M, Sudre B, Heederik DJ, Piarroux R. Assessment of dust sampling methods for the study of cultivable-microorganism exposure in sta- bles. Appl Environ Microbiol 2009;75: 7617-23.
  12. Kaiser H. The varimax criterion for analytic rotation in factor analysis. Psy- chometrika 1958;23:187-200.
  13. Vogel K, Blümer N, Korthals M, et al. Animal shed Bacillus licheniformis spores possess allergy-protective as well as in- flammatory properties. J Allergy Clin Im- munol 2008;122:307-12.
  14. Ege MJ, Bieli C, Frei R, et al. Prenatal farm exposure is related to the expression of receptors of the innate immunity and to atopic sensitization in school-age chil- dren. J Allergy Clin Immunol 2006;117: 817-23.
  15. Ege MJ, Frei R, Bieli C, et al. Not all farming environments protect against the development of asthma and wheeze in children. J Allergy Clin Immunol 2007; 119:1140-7.
  16. Schaub B, Liu J, Höppler S, et al. Ma- ternal farm exposure modulates neonatal immune mechanisms through regulatory T cells. J Allergy Clin Immunol 2009; 123:774-82.
  17. Debarry J, Garn H, Hanuszkiewicz A, et al. Acinetobacter lwoffii and Lactococ- cus lactis strains isolated from farm cow- sheds possess strong allergy-protective properties. J Allergy Clin Immunol 2007; 119:1514-21.
  18. Smits HH, Gloudemans AK, van Nim- wegen M, et al. Cholera toxin B suppresses allergic inflammation through induction of secretory IgA. Mucosal Immunol 2009; 2:331-9.
  19. Bisgaard H, Hermansen MN, Buch- vald F, et al. Childhood asthma after bac- terial colonization of the airway in neo- nates. N Engl J Med 2007;357:1487-95.
  20. Hilty M, Burke C, Pedro H, et al. Dis- ordered microbial communities in asth- matic airways. PLoS One 2010;5(1):e8578.
  21. Kalliomaki M, Salminen S, Isolauri E. Positive interactions with the microbiota: probiotics. Adv Exp Med Biol 2008;635:57- 66.
  22. Pakarinen J, Hyvärinen A, Salkinoja- Salonen M, et al. Predominance of gram- positive bacteria in house dust in the low- allergy risk Russian Karelia. Environ Microbiol 2008;10:3317-25.
  23. Hansen G, Yeung VP, Berry G, Umetsu DT, DeKruyff RH. Vaccination with heat- killed Listeria as adjuvant reverses estab- lished allergen-induced airway hyper- reactivity and inflammation: role of CD8+ T cells and IL-18. J Immunol 2000;164: 223-30.
  24. Sahakian NM, Park JH, Cox-Ganser JM. Dampness and mold in the indoor environment: implications for asthma. Immunol Allergy Clin North Am 2008; 28:485-505.
  25. Williams LK, Ownby DR, Maliarik MJ, Johnson CC. The role of endotoxin and its receptors in allergic disease. Ann Allergy Asthma Immunol 2005;94:323-32.
  26. Moffatt MF, Gut IG, Demenais F, et al. A large-scale, consortium-based genome- wide association study of asthma. N Engl J Med 2010;363:1211-21.

Cited by

Sorted by citations

Authors
Ege, M. J., Mayer, M., Normand, A.-C., Genuneit, J., Cookson, W. O. C. M., Braun-Fahrländer, C., Heederik, D., Piarroux, R., & von Mutius, E.
Affiliations
  • Technical University of Munich (DE)
  • Laboratoire Chrono-Environnement (FR)
  • Universität Ulm (DE)
  • Imperial College London (GB)
  • Utrecht University (NL)
  • Aix-Marseille Université (FR)
Venue
New England Journal of Medicine
Published
2011-02-24
Volume
364
Issue
8
Pages
701-709
ISSN
  • 0028-4793 (ISSN-L)
  • 1533-4406
OpenAlex
W2152259491
Cited by
1,529
References
1
Citations by year
2026: 54 · 2025: 64 · 2024: 72 · 2023: 91 · 2022: 99 · 2021: 110 · 2020: 133 · 2019: 102 · 2018: 93 · 2017: 122 · 2016: 107 · 2015: 119 · 2014: 119 · 2013: 99 · 2012: 95
FWCI
78.73
Type
journal article
Language
en
Open access
Locations
  • New England Journal of Medicine (publishedVersion)
  • PubMed (publishedVersion)
  • Zurich Open Repository and Archive (University of Zurich) (acceptedVersion, other-oa)
  • Bern Open Repository and Information System (University of Bern) (submittedVersion)
  • Utrecht University Repository (Utrecht University) (submittedVersion, other-oa)
  • Zurich Open Repository and Archive (University of Zurich) (submittedVersion, other-oa)
  • Zurich Open Repository and Archive (University of Zurich)
Funders
  • Koch Institute for Integrative Cancer Research, Massachusetts Institute of Technology
  • National Institute for Health and Care Research (NF-SI-0508-10212)
  • European Commission (LSH-2004-1.2.5-1)
  • Deutsche Forschungsgemeinschaft
  • Robert Koch Institut
Topics
  • Health Sciences › Medicine › Physiology › Asthma and respiratory diseases
  • Physical Sciences › Environmental Science › Health, Toxicology and Mutagenesis › Indoor Air Quality and Microbial Exposure
  • Health Sciences › Medicine › Immunology and Allergy › Allergic Rhinitis and Sensitization
Keywords
childhood asthma, atopy, farm children, microbial exposure, microbial diversity, mattress dust, settled dust, environmental bacteria, environmental fungi, Eurotium, Listeria monocytogenes, Corynebacterium, Bacillus, allergy prevention, hygiene hypothesis
MeSH terms
Adolescent, Agriculture, Asthma, Bacteria, Child, Cross-Sectional Studies, Dust, Environmental Exposure, Female, Fungi, Humans, Hypersensitivity, Immunoglobulin E, Male, Surveys and Questionnaires, Risk Factors, Prevalence, Logistic Models, Polymorphism, Single-Stranded Conformational, Biodiversity

About these checks

Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.

Statistics and arithmetic are recomputed, not judged.

Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.

What counts as a claim ›How we measure confidence ›How we check this ›

Are you an author, or do you see a problem with this page? Request a review