Cited by 626Genetics and Neurodevelopmental DisordersChromosomal and Genetic VariationsEpigenetics and DNA Methylation

L1 retrotransposition in neurons is modulated by MeCP2

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Muotri, Alysson R., Marchetto, Maria C. N., Coufal, Nicole G., Oefner, Ruth, Yeo, Gene, Nakashima, Kinichi, Gage, Fred H.·2010·Nature

Abstract

Long interspersed nuclear elements-1 (LINE-1 or L1s) are abundant retrotransposons that comprise approximately 20% of mammalian genomes. Active L1 retrotransposons can impact the genome in a variety of ways, creating insertions, deletions, new splice sites or gene expression fine-tuning. We have shown previously that L1 retrotransposons are capable of mobilization in neuronal progenitor cells from rodents and humans and evidence of massive L1 insertions was observed in adult brain tissues but not in other somatic tissues. In addition, L1 mobility in the adult hippocampus can be influenced by the environment. The neuronal specificity of somatic L1 retrotransposition in neural progenitors is partially due to the transition of a Sox2/HDAC1 repressor complex to a Wnt-mediated T-cell factor/lymphoid enhancer factor (TCF/LEF) transcriptional activator. The transcriptional switch accompanies chromatin remodelling during neuronal differentiation, allowing a transient stimulation of L1 transcription. The activity of L1 retrotransposons during brain development can have an impact on gene expression and neuronal function, thereby increasing brain-specific genetic mosaicism. Further understanding of the molecular mechanisms that regulate L1 expression should provide new insights into the role of L1 retrotransposition during brain development. Here we show that L1 neuronal transcription and retrotransposition in rodents are increased in the absence of methyl-CpG-binding protein 2 (MeCP2), a protein involved in global DNA methylation and human neurodevelopmental diseases. Using neuronal progenitor cells derived from human induced pluripotent stem cells and human tissues, we revealed that patients with Rett syndrome (RTT), carrying MeCP2 mutations, have increased susceptibility for L1 retrotransposition. Our data demonstrate that L1 retrotransposition can be controlled in a tissue-specific manner and that disease-related genetic mutations can influence the frequency of neuronal L1 retrotransposition. Our findings add a new level of complexity to the molecular events that can lead to neurological disorders.

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  • Several neurological disorders, including Rhett Syndrome, Smith-Magenis syndrome and schizophrenia, are characterized by dysregulation of L1 activity.

    “several neurological disorders, including Rhett Syndrome, Smith–Magenis syndrome and schizophrenia are characterized by dysregulation of L1 activity27,45,47.”

    From SIRT6 represses LINE1 retrotransposons by ribosylating KAP1 but this repression fails with stress and age (2014) · cites this paper as [27]

    The paper’s main text (page unavailable) reports increased L1 retrotransposition in Rett syndrome neuronal progenitor cells and brain tissue compared with controls. It does not address Smith–Magenis syndrome or schizophrenia, so it supports only the Rett syndrome part of the sentence. (LLM, conf=0.88)

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Research works printed but not linked: 28

  1. [1]Lander ES Initial sequencing and analysis of the human genome Nature 409 6822 860 921 2001 11237011
  2. [2]Gibbs RA Genome sequence of the Brown Norway rat yields insights into mammalian evolution Nature 428 6982 493 521 2004 15057822
  3. [3]Waterston RH Initial sequencing and comparative analysis of the mouse genome Nature 420 6915 520 562 2002 12466850
  4. [4]Kazazian HH Jr Mobile elements and disease Curr Opin Genet Dev 8 3 343 350 1998 9690999
  5. [6]Perepelitsa-Belancio V Deininger P RNA truncation by premature polyadenylation attenuates human mobile element activity Nat Genet 35 4 363 366 2003 14625551
  6. [7]Muotri AR Somatic mosaicism in neuronal precursor cells mediated by L1 retrotransposition Nature 435 7044 903 910 2005 15959507
  7. [8]Coufal NG L1 retrotransposition in human neural progenitor cells Nature 460 7259 1127 1131 2009 19657334 PMC2909034
  8. [9]Muotri AR Zhao C Marchetto MC Gage FH Environmental influence on L1 retrotransposons in the adult hippocampus Hippocampus 19 10 1002 1007 2009 19771587 PMC2758700
  9. [10]Kuwabara T Wnt-mediated activation of NeuroD1 and retro-elements during adult neurogenesis Nat Neurosci 12 9 1097 1105 2009 19701198 PMC2764260
  10. [11]Muotri AR Gage FH Generation of neuronal variability and complexity Nature 441 7097 1087 1093 2006 16810244
  11. [12]Singer T McConnell MJ Marchetto MC Coufal NG Gage FH LINE-1 retrotransposons: mediators of somatic variation in neuronal genomes? Trends Neurosci 33 8 345 354 20471112 PMC2916067
  12. [13]Nan X Transcriptional repression by the methyl-CpG-binding protein MeCP2 involves a histone deacetylase complex Nature 393 6683 386 389 1998 9620804
  13. [14]Jones PL Methylated DNA and MeCP2 recruit histone deacetylase to repress transcription Nat Genet 19 2 187 191 1998 9620779
  14. [15]Yu F Zingler N Schumann G Stratling WH Methyl-CpG-binding protein 2 represses LINE-1 expression and retrotransposition but not Alu transcription Nucleic Acids Res 29 21 4493 4501 2001 11691937 PMC60185
  15. [16]Zhao X Mice lacking methyl-CpG binding protein 1 have deficits in adult neurogenesis and hippocampal function Proc Natl Acad Sci U S A 100 11 6777 6782 2003 12748381 PMC164523
  16. [17]Klose RJ DNA binding selectivity of MeCP2 due to a requirement for A/T sequences adjacent to methyl-CpG Mol Cell 19 5 667 678 2005 16137622
  17. [18]Rowe HM KAP1 controls endogenous retroviruses in embryonic stem cells Nature 463 7278 237 240 20075919
  18. [19]Grimaldi G Skowronski J Singer MF Defining the beginning and end of KpnI family segments Embo J 3 8 1753 1759 1984 6090124 PMC557592
  19. [20]Moran JV Gilbert N Mammalian LINE-1 retrotransposons and related elements ASM Press Washington, DC 2002
  20. [21]Amir RE Rett syndrome is caused by mutations in X-linked MECP2, encoding methyl-CpG-binding protein 2 Nat Genet 23 2 185 188 1999 10508514
  21. [22]Moran JV High frequency retrotransposition in cultured mammalian cells Cell 87 5 917 927 1996 8945518
  22. [24]Esnault C Maestre J Heidmann T Human LINE retrotransposons generate processed pseudogenes Nat Genet 24 4 363 367 2000 10742098
  23. [25]Dewannieux M Esnault C Heidmann T LINE-mediated retrotransposition of marked Alu sequences Nat Genet 35 1 41 48 2003 12897783
  24. [26]Wei W Human L1 retrotransposition: cis preference versus trans complementation Mol Cell Biol 21 4 1429 1439 2001 11158327 PMC99594
  25. [27]Guy J Gan J Selfridge J Cobb S Bird A Reversal of neurological defects in a mouse model of Rett syndrome Science 315 5815 1143 1147 2007 17289941 PMC7610836
  26. [28]Palmer TD Takahashi J Gage FH The adult rat hippocampus contains primordial neural stem cells Mol Cell Neurosci 8 6 389 404 1997 9143557
  27. [29]Nakashima K Synergistic signaling in fetal brain by STAT3-Smad1 complex bridged by p300 Science 284 5413 479 482 1999 10205054
  28. [30]Takahashi K Induction of pluripotent stem cells from adult human fibroblasts by defined factors Cell 131 5 861 872 2007 18035408

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Authors
Muotri, A. R., Marchetto, M. C. N., Coufal, N. G., Oefner, R., Yeo, G., Nakashima, K., & Gage, F. H.
Affiliations
  • University of California San Diego (US)
  • Salk Institute for Biological Studies (US)
  • Nara Institute of Science and Technology (JP)
Corresponding author
  • Muotri, Alysson R.
  • Gage, Fred H.
Venue
Nature
Published
2010-11
Volume
468
Issue
7322
Pages
443-446
ISSN
  • 0028-0836 (ISSN-L)
  • 1476-4687
OpenAlex
W2015734897
Cited by
626
References
2
Citations by year
2026: 20 · 2025: 29 · 2024: 28 · 2023: 7 · 2022: 30 · 2021: 28 · 2020: 36 · 2019: 31 · 2018: 45 · 2017: 47 · 2016: 52 · 2015: 44 · 2014: 51 · 2013: 67 · 2012: 56
FWCI
29.23
Type
journal article
Language
en
Open access
Locations
  • Nature (publishedVersion)
  • PubMed (publishedVersion)
  • Europe PMC (PubMed Central) (acceptedVersion)
  • PubMed Central (acceptedVersion)
  • RePEc: Research Papers in Economics (submittedVersion)
  • eScholarship (California Digital Library) (submittedVersion)
Funders
  • National Institutes of Health (1dp2od006495-01)
  • National Institute of Mental Health (R01MH088485)
Topics
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Genetics and Neurodevelopmental Disorders
  • Life Sciences › Agricultural and Biological Sciences › Plant Science › Chromosomal and Genetic Variations
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Epigenetics and DNA Methylation
Keywords
LINE-1 retrotransposons, MeCP2, Rett syndrome, DNA methylation, neuronal differentiation, induced pluripotent stem cells, brain development, neurodevelopmental disorders, transposable elements, chromatin remodeling, TCF/LEF transcription
MeSH terms
Animals, Brain, Humans, Male, Methylation, Neurons, Organ Specificity, Promoter Regions, Genetic, Recombination, Genetic, Transcription, Genetic, Rett Syndrome, DNA Methylation, Long Interspersed Nucleotide Elements, 5' Untranslated Regions, Gene Silencing, Neuroepithelial Cells, Mice, Rats, Methyl-CpG-Binding Protein 2, Induced Pluripotent Stem Cells

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