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Rational design of cationic lipids for siRNA delivery
Abstract
We adopted a rational approach to design cationic lipids for use in formulations to deliver small interfering RNA (siRNA). Starting with the ionizable cationic lipid 1,2-dilinoleyloxy-3-dimethylaminopropane (DLinDMA), a key lipid component of stable nucleic acid lipid particles (SNALP) as a benchmark, we used the proposed in vivo mechanism of action of ionizable cationic lipids to guide the design of DLinDMA-based lipids with superior delivery capacity. The best-performing lipid recovered after screening (DLin-KC2-DMA) was formulated and characterized in SNALP and demonstrated to have in vivo activity at siRNA doses as low as 0.01 mg/kg in rodents and 0.1 mg/kg in nonhuman primates. To our knowledge, this represents a substantial improvement over previous reports of in vivo endogenous hepatic gene silencing.
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“There are limited published data on the in vivo delivery of self-amplifying RNA using nonviral delivery strategies (3,14,18), and none has taken advantage of the recently developed, clinically suitable delivery systems for siRNA (19,20).”
From Nonviral delivery of self-amplifying RNA vaccines (2012) · cites this paper as [19]
In the citing paper
“Recently, there has been an exponential growth in the development of clinically suitable nonviral delivery systems for siRNA (19,20); we have taken advantage of these innovations to develop the LNP/RNA formulation and have now embarked on a more extensive evaluation of other nonviral delivery systems.”
From Nonviral delivery of self-amplifying RNA vaccines (2012) · cites this paper as [19]
In the citing paper
“They can also increase the transport efficiency of siRNA by lowering toxicity and enhancing biological dispersion.319”
From Smart nanoparticles for cancer therapy (2023) · cites this paper as [319]
In the citing paper
“considerable effort has been made to reduce the siRNA payload by developing different lipid formulations for delivery, which has so far led to a tenfold or even 100-fold reduction in the dose of siRNA administered to different models77,78.”
From Perspectives and opportunities for nanomedicine in the management of atherosclerosis (2011) · cites this paper as [77]
In the citing paper
“Semple et al. reported that DLin-KC2-DMA containing stable nucleic acid lipid particles (SNALPs) exhibited in vivo activity at siRNA doses of 0.01 mg/kg in the mouse model and was capable of silencing the TTR gene in nonhuman primates with ED50 around 0.3 mg/kg.[63]”
From RNA delivery biomaterials for the treatment of genetic and rare diseases (2019) · cites this paper as [63]
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“Four samples were studied here: native empty LNP (1); LNP containing 50% phosphorothioated siRNA strand (2) or at 100% phosphorothioated (3) and LNP containing mRNA (4).”
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“A variety of siRNA-based therapeutics have been developed, showing great promise in disease treatments [5,6].”
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“However, the application of lipid-based nanoparticle delivery systems, initially developed for the in vivo delivery of siRNA, has enabled systemic administration of modified mRNA.(22)”
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“Two particularly potent ionizable cationic lipids were identified, 2,2-dilinoleyl-4-(2-dimethylaminoethyl)-[1,3]-dioxolane (DLin-KC2-DMA) [89] and heptatriaconta-6,9,28,31-tetraen19-yl 4-(dimethylamino)butanoate (DLinMC3-DMA) [88] (for lipid structures, see Fig.”
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Chang, H., Lv, J., Gao, X., Wang, X. M., Wang, H., Chen, H., Xu, H., Li, L., & Cheng, Y. (2017) · Nano Letters · doi:10.1021/acs.nanolett.6b04955 · Cited by 194
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Khare, P., Edgecomb, S. X., Hamadani, C. M., Tanner, E. E. L., & S Manickam, D. (2023) · Advanced Drug Delivery Reviews · doi:10.1016/j.addr.2023.114861 · Cited by 187
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“Short interfering RNA (siRNA) is double stranded, non-coding RNA, which binds to complementary mRNA to direct gene silencing through argonaute, an endonuclease within the RNA-induced silencing complex (RISC) [1,2].”
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“Generally, two important factors are considered in the rational design of ionizable lipids: (1) the pKa value of the head group which determines the pH condition at which the lipid gets protonated or deprotonated; and (2) the lipid capacity to induce the hexagonal HII phase structure when the ionized lipid interacts w…”
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“We evaluated dendrimers for their ability to silence Factor VII (FVII) in hepatocytes because this blood-clotting factor can be readily quantified from a small serum sample (3, 4).”
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Self-citationLipid Nanoparticles for Gene Delivery
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“Oligonucleotides were recovered by methanol chloroform extraction [19].”
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BackgroundDrug delivery systems for CRISPR-based genome editors
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“This ApoE–LDLR ‘endogenous targeting’ has resulted in efficient hepatocyte delivery in NHPs 162,171,173 and humans 16,174 .”
BackgroundInfluentialIn vivo delivery of RNAi with lipid-based nanoparticles
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“…group, such as IL-ECFP 160, combined with two relatively large dilinoleyloxy tails (IL-ECFP 162 and 171) may behave in a “cone” shape and facilitate the formation of hexagonal H II phase when contacting with endosomal membrane, disrupting the bilayer structure and release the RNA therapeutics 29 .”
BackgroundLeveraging Physiology for Precision Drug Delivery
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BackgroundLipid Nanoparticle Delivery of siRNA to Silence Neuronal Gene Expression in the Brain
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Kulkarni, J. A., Witzigmann, D., Leung, J., van der Meel, R., Zaifman, J., Darjuan, M. M., Grisch-Chan, H. M., Thöny, B., Tam, Y. Y. C., & Cullis, P. R. (2019) · Nanoscale · doi:10.1039/c9nr02004g · Cited by 161
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“NPs in general can be assembled in vitro to encapsulate a variety of substances, which makes them a valuable tool to cargo immunomodulatory sequences such as siRNA, adjuvants such as immunostimulatory sequences (ISS) [5], and drugs such as antibiotics [5,10].”
BackgroundInfluentialDelivery of RNA Therapeutics: The Great Endosomal Escape!
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“Therefore, ionized cationic lipids are thought to ion-pair with endosomal anionic lipids to form a cone structure that destabilizes lipid bilayers by driving transition into an inverted hexagonal H II phase, resulting in endosomal escape of the LNP into the cytoplasm [48].”
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“…efficacious mRNA silencing in hepatocytes at siRNA doses of ~1 mg/kg 6,7 and more recent reports show similar efficacy at doses of ~0.01 mg/kg. 4,5 Importantly, not only has progress been made in the potency and mechanistic understanding of how these LNP mediate siRNA delivery, 8 but also in…”
InfluentialSelf-citation
Metadata
- Authors
- Semple, S. C., Akinc, A., Chen, J., Sandhu, A. P., Mui, B. L., Cho, C. K., Sah, D. W. Y., Stebbing, D., Crosley, E. J., Yaworski, E., Hafez, I. M., Dorkin, J. R., Qin, J., Lam, K., Rajeev, K. G., Wong, K. F., Jeffs, L. B., Nechev, L., Eisenhardt, M. L., Jayaraman, M., Kazem, M., Maier, M. A., Srinivasulu, M., Weinstein, M. J., Chen, Q., Alvarez, R., Barros, S. A., De, S., Klimuk, S. K., Borland, T., Kosovrasti, V., Cantley, W. L., Tam, Y. K., Manoharan, M., Ciufolini, M. A., Tracy, M. A., de Fougerolles, A., MacLachlan, I., Cullis, P. R., Madden, T. D., & Hope, M. J.
- Affiliations
- Arbutus Biopharma (Canada) (CA)
- Alnylam Pharmaceuticals (United States) (US)
- University of British Columbia (CA)
- Corresponding author
- Semple, Sean C
- Akinc, Akin
- ORCID
- Venue
- Nature Biotechnology
- Published
- 2010-01-17
- Volume
- 28
- Issue
- 2
- Pages
- 172-176
- ISSN
- 0733-222X (ISSN-L)
- 1087-0156
- 1546-1696
- OpenAlex
- W2083249633
- Cited by
- 1,822
- References
- 24
- Citations by year
- 2026: 124 · 2025: 165 · 2024: 175 · 2023: 145 · 2022: 145 · 2021: 119 · 2020: 90 · 2019: 102 · 2018: 83 · 2017: 85 · 2016: 95 · 2015: 85 · 2014: 105 · 2013: 103 · 2012: 98
- FWCI
- 39.32
- Type
- journal article
- Language
- en
- Open access
- closed
- Licence
- www.springer.com/tdm (tdm)
- Locations
- Nature Biotechnology (publishedVersion)
- PubMed (publishedVersion)
- Funders
- Alnylam Pharmaceuticals
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › RNA Interference and Gene Delivery
- Physical Sciences › Materials Science › Biomaterials › Nanoparticle-Based Drug Delivery
- Life Sciences › Pharmacology, Toxicology and Pharmaceutics › Pharmaceutical Science › Advancements in Transdermal Drug Delivery
- Keywords
- siRNA delivery, lipid nanoparticles, RNAi therapeutics, ionizable cationic lipids
- MeSH terms
- Cations, Drug Carriers, Drug Compounding, Lipids, Transfection, Drug Design, RNA, Small Interfering
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