Functional engraftment of colon epithelium expanded in vitro from a single adult Lgr5+ stem cell
Abstract
Adult stem-cell therapy holds promise for the treatment of gastrointestinal diseases. Here we describe methods for long-term expansion of colonic stem cells positive for leucine-rich repeat containing G protein-coupled receptor 5 (Lgr5(+) cells) in culture. To test the transplantability of these cells, we reintroduced cultured GFP(+) colon organoids into superficially damaged mouse colon. The transplanted donor cells readily integrated into the mouse colon, covering the area that lacked epithelium as a result of the introduced damage in recipient mice. At 4 weeks after transplantation, the donor-derived cells constituted a single-layered epithelium, which formed self-renewing crypts that were functionally and histologically normal. Moreover, we observed long-term (>6 months) engraftment with transplantation of organoids derived from a single Lgr5(+) colon stem cell after extensive in vitro expansion. These data show the feasibility of colon stem-cell therapy based on the in vitro expansion of a single adult colonic stem cell.
Integrity signals
Registry
Cites
Statistics
Claims the paper makes
Claims other papers make about this one
Each is checked against this paper’s own text: does it say what the citing paper says it does?
Tissues including small intestine, colon, stomach, esophagus, tongue, liver, lung, pancreas, heart, ear, and skin have been obtained from iPSCs, adult or fetal cells, either stem/progenitor cells or differentiated cells.
“Under defined physicochemical conditions, tissues such as small intestine7, colon30,31, stomach32,33, esophagus30, tongue34, liver35–38, lung15, pancreas39–41, heart42, ear43, and skin44 have been obtained from iPSCs, adult or fetal cells, either stem/progenitor cells or differentiated cells.”
From Organoids (2022) · cites this paper as [30]
Organoids can arise either from round colonies generated by single cells or from initial multicellular structures such as intestinal crypts, cell aggregates, or micropatterned cells.
“Organoids can arise either from round colonies generated by single cells7,35 or, from initial multicellular structures such as intestinal crypts30,63, cell aggregates24 or micropatterned cells26.”
From Organoids (2022) · cites this paper as [30]
Intestinal organoids were one of the earliest organoid types to be successfully cultured in vitro.
“Intestinal organoids are among the first organoid types successfully established in vitro7,30.”
From Organoids (2022) · cites this paper as [30]
Embedding intact murine colonic crypts and isolated Lgr5+ progenitor cells in collagen I with hepatocyte growth factor, R-spondin 1, EGF, and Noggin generated organoids that were able to engraft onto damaged mouse intestinal epithelia upon transplantation.
“Yui and colleagues showed that embedding intact murine colonic crypts and isolated Lgr5+ progenitor cells in collagen I with hepatocyte growth factor, R-spondin 1, EGF, and Noggin generated organoids that were able to engraft onto damaged mouse intestinal epithelia upon transplantation.”
From Towards organoid culture without Matrigel (2021) · cites this paper as [89]
Ex vivo cultured colon organoids were successfully transplanted into mice colons and formed functionally and histologically normal crypts.
“The clinical translatability of this study gets support from previous study 34 in which ex vivo cultured colon organoids were successfully transplanted into mice colons and formed functionally and histologically normal crypts.”
From CRISPR-Cas9: a new and promising player in gene therapy (2015) · cites this paper as [34]
Cites
The serial cultivation of human diploid cell strains
Hayflick, L., & Moorhead, P. S. (1961) · Experimental Cell Research · doi:10.1016/0014-4827(61)90192-6 · Cited by 8,508 · see citing works
Single Lgr5 stem cells build crypt-villus structures in vitro without a mesenchymal niche
Sato, T., Vries, R. G., Snippert, H. J., van de Wetering, M., Barker, N., Stange, D. E., van Es, J. H., Abo, A., Kujala, P., Peters, P. J., et al. (2009) · Nature · doi:10.1038/nature07935 · Cited by 7,204 · see citing works
Self-citationIdentification of stem cells in small intestine and colon by marker gene Lgr5
Barker, N., van Es, J. H., Kuipers, J., Kujala, P., van den Born, M., Cozijnsen, M., Haegebarth, A., Korving, J., Begthel, H., Peters, P. J., et al. (2007) · Nature · doi:10.1038/nature06196 · Cited by 5,687 · see citing works
Self-citationSato, T., Stange, D. E., Ferrante, M., Vries, R. G. J., van Es, J. H., van den Brink, S., van Houdt, W. J., Pronk, A., van Gorp, J., Siersema, P. D., et al. (2011) · Gastroenterology · doi:10.1053/j.gastro.2011.07.050 · Cited by 3,753 · see citing works
Self-citation‘Green mice’ as a source of ubiquitous green cells
Okabe, M., Ikawa, M., Kominami, K., Nakanishi, T., & Nishimune, Y. (1997) · FEBS Letters · doi:10.1016/s0014-5793(97)00313-x · Cited by 2,581 · see citing works
Paneth cells constitute the niche for Lgr5 stem cells in intestinal crypts
Sato, T., van Es, J. H., Snippert, H. J., Stange, D. E., Vries, R. G., van den Born, M., Barker, N., Shroyer, N. F., van de Wetering, M., & Clevers, H. (2011) · Nature · doi:10.1038/nature09637 · Cited by 2,510 · see citing works
Self-citationA ROCK inhibitor permits survival of dissociated human embryonic stem cells
Watanabe, K., Ueno, M., Kamiya, D., Nishiyama, A., Matsumura, M., Wataya, T., Takahashi, J. B., Nishikawa, S., Nishikawa, S.-I., Muguruma, K., et al. (2007) · Nature Biotechnology · doi:10.1038/nbt1310 · Cited by 2,055 · see citing works
Snippert, H. J., van der Flier, L. G., Sato, T., van Es, J. H., van den Born, M., Kroon-Veenboer, C., Barker, N., Klein, A. M., van Rheenen, J., Simons, B. D., et al. (2010) · Cell · doi:10.1016/j.cell.2010.09.016 · Cited by 1,951 · see citing works
Self-citationChemically induced mouse models of intestinal inflammation
Wirtz, S., Neufert, C., Weigmann, B., & Neurath, M. F. (2007) · Nature Protocols · doi:10.1038/nprot.2007.41 · Cited by 1,567 · see citing works
Lgr5+ve Stem Cells Drive Self-Renewal in the Stomach and Build Long-Lived Gastric Units In Vitro
Barker, N., Huch, M., Kujala, P., van de Wetering, M., Snippert, H. J., van Es, J. H., Sato, T., Stange, D. E., Begthel, H., van den Born, M., et al. (2010) · Cell Stem Cell · doi:10.1016/j.stem.2009.11.013 · Cited by 1,547 · see citing works
Self-citationvan Es, J. H., van Gijn, M. E., Riccio, O., van den Born, M., Vooijs, M., Begthel, H., Cozijnsen, M., Robine, S., Winton, D. J., Radtke, F., et al. (2005) · Nature · doi:10.1038/nature03659 · Cited by 1,541 · see citing works
Self-citationLgr5 homologues associate with Wnt receptors and mediate R-spondin signalling
de Lau, W., Barker, N., Low, T. Y., Koo, B., Li, V. S. W., Teunissen, H., Kujala, P., Haegebarth, A., Peters, P. J., van de Wetering, M., et al. (2011) · Nature · doi:10.1038/nature10337 · Cited by 1,267 · see citing works
Self-citationBmi1 is expressed in vivo in intestinal stem cells
Sangiorgi, E., & Capecchi, M. R. (2008) · Nature Genetics · doi:10.1038/ng.165 · Cited by 1,192 · see citing works
Notch signals control the fate of immature progenitor cells in the intestine
Fré, S., Huyghe, M., Mourikis, P., Robine, S., Louvard, D., & Artavanis‐Tsakonas, S. (2005) · Nature · doi:10.1038/nature03589 · Cited by 936 · see citing works
Carmon, K. S., Gong, X. W., Lin, Q., Thomas, A., & Liu, Q. (2011) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1106083108 · Cited by 857 · see citing works
De Novo Crypt Formation and Juvenile Polyposis on BMP Inhibition in Mouse Intestine
Haramis, A.-P. G., Begthel, H., van den Born, M., van Es, J. H., Jonkheer, S. M., Offerhaus, G. J. A., & Clevers, H. C. (2004) · Science · doi:10.1126/science.1093587 · Cited by 796 · see citing works
Self-citationOrganizing cell renewal in the intestine: stem cells, signals and combinatorial control
Crosnier, C., Stamataki, D., & Lewis, J. H. (2006) · Nature Reviews Genetics · doi:10.1038/nrg1840 · Cited by 756 · see citing works
Wong, G. T., Manfra, D. J., Poulet, F. M., Zhang, Q., Josien, H. B., Bara, T. A., Engstrom, L., Pinzon-Ortiz, M. C., Fine, J. S., Lee, H.-J. J., et al. (2004) · Journal of Biological Chemistry · doi:10.1074/jbc.m311652200 · Cited by 715 · see citing works
Self-Renewal and Cancer of the Gut: Two Sides of a Coin
Radtke, F., & Clevers, H. (2005) · Science · doi:10.1126/science.1104815 · Cited by 690 · see citing works
Self-citationBarker, N., van de Wetering, M., & Clevers, H. (2008) · Genes & Development · doi:10.1101/gad.1674008 · Cited by 629 · see citing works
Self-citationMitogenic Influence of Human R-Spondin1 on the Intestinal Epithelium
Kim, K., Kakitani, M., Zhao, J., Oshima, T., Tang, T., Binnerts, M. E., Liu, Y., Boyle, B., Park, E., Emtage, P. C. R., et al. (2005) · Science · doi:10.1126/science.1112521 · Cited by 587 · see citing works
The intestinal epithelial stem cell: the mucosal governor
Potten, C. S., Booth, C., & Pritchard, D. M. (1997) · International Journal of Experimental Pathology · doi:10.1046/j.1365-2613.1997.280362.x · Cited by 490 · see citing works
Gerbe, F., van Es, J. H., Makrini, L., Brulin, B., Mellitzer, G., Robine, S., Romagnolo, B., Shroyer, N. F., Bourgaux, J., Pignodel, C., et al. (2011) · The Journal of Cell Biology · doi:10.1083/jcb.201010127 · Cited by 430 · see citing works
Self-citationR-Spondin1 regulates Wnt signaling by inhibiting internalization of LRP6
Binnerts, M. E., Kim, K.-A., Bright, J. M., Patel, S. M., Tran, K., Zhou, M., Leung, J., Liu, Y., Lomas, W. E., Dixon, M., et al. (2007) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0702305104 · Cited by 282 · see citing works
Wei, Q., Yokota, C., Semënov, M. V., Doble, B. W., Woodgett, J. R., & He, X. (2007) · Journal of Biological Chemistry · doi:10.1074/jbc.m701927200 · Cited by 182 · see citing works
Requirement of Notch activation during regeneration of the intestinal epithelia
Okamoto, R., Tsuchiya, K., Nemoto, Y., Akiyama, J., Nakamura, T., Kanai∥, T., & Watanabe, M. (2008) · American Journal of Physiology-Gastrointestinal and Liver Physiology · doi:10.1152/ajpgi.90225.2008 · Cited by 182 · see citing works
Self-citationIntestinal stem cells lacking the Math1 tumour suppressor are refractory to Notch inhibitors
van Es, J. H., Geest, N. D., van den Born, M., Clevers, H. C., & Hassan, B. A. (2010) · Nature Communications · doi:10.1038/ncomms1017 · Cited by 139 · see citing works
Self-citationIntestinal Epithelial Stem Cells and Progenitors
Bjerknes, M., & Cheng, H. (2006) · Methods in enzymology on CD-ROM/Methods in enzymology · doi:10.1016/s0076-6879(06)19014-x · Cited by 112 · see citing works
Tahara, Y., Ido, A., Yamamoto, S., Miyata, Y., Uto, H., Hori, T., Hayashi, K., & Tsubouchi, H. (2003) · Journal of Pharmacology and Experimental Therapeutics · doi:10.1124/jpet.103.054106 · Cited by 102 · see citing works
Clonogenic growth of epithelial cells from normal colonic mucosa from both mice and humans
Whitehead, R. H., Demmler, K., Rockman, S. P., & Watson, N. (1999) · Gastroenterology · doi:10.1016/s0016-5085(99)70344-6 · Cited by 96 · see citing works
The isolation and culture of adult mouse colonic epithelium.
Booth, C. E., Patel, S. C., Bennion, G., & Potten, C. S. (1995) · PubMed · Cited by 61 · see citing works
Colonic mucosal replacement by syngeneic small intestinal stem cell transplantation
Tait, I. S., EVANS, G. S., Flint, N., & Campbell, F. C. (1994) · The American Journal of Surgery · doi:10.1016/0002-9610(94)90055-8 · Cited by 36 · see citing works
Hepatocyte growth factor promotes colonic epithelial regeneration via Akt signaling
Kanayama, M., Takahara, T., Yata, Y., Xue, F., Shinno, E., Nonome, K., Kudo, H., Kawai, K., Kudo, T., Tabuchi, Y., et al. (2007) · American Journal of Physiology-Gastrointestinal and Liver Physiology · doi:10.1152/ajpgi.00068.2007 · Cited by 30 · see citing works
Engraftment of Mucosal Stem Cells into Murine Jejunum is Dependent on Optimal Dose of Cells
Avansino, J. R., Chen, D. C., Woolman, J. D., Hoagland, V. D., & Stelzner, M. G. (2005) · Journal of Surgical Research · doi:10.1016/j.jss.2005.09.009 · Cited by 19 · see citing works
Flagged first, then by citations
Cited by
Sorted by citations
Wnt/β-Catenin Signaling, Disease, and Emerging Therapeutic Modalities
Nusse, R., & Clevers, H. (2017) · Cell · doi:10.1016/j.cell.2017.05.016 · Cited by 4,342 · see citing works
Self-citationOrganoid Models and Applications in Biomedical Research
Xinaris, C., Brizi, V., & Remuzzi, G. (2015) · The Nephron journals/Nephron journals · doi:10.1159/000433566 · Cited by 3,517 · see citing works
Modeling Development and Disease with Organoids
Clevers, H. (2016) · Cell · doi:10.1016/j.cell.2016.05.082 · Cited by 3,196 · see citing works
Self-citationOrganogenesis in a dish: Modeling development and disease using organoid technologies
Lancaster, M. A., & Knoblich, J. A. (2014) · Science · doi:10.1126/science.1247125 · Cited by 2,931 · see citing works
In vitro expansion of single Lgr5+ liver stem cells induced by Wnt-driven regeneration
Huch, M., Dorrell, C., Boj, S. F., van Es, J. H., Li, V. S. W., van de Wetering, M., Sato, T., Hamer, K., Sasaki, N., Finegold, M. J., et al. (2013) · Nature · doi:10.1038/nature11826 · Cited by 1,555 · see citing works
Self-citationOrganoids as an in vitro model of human development and disease
Fatehullah, A., Tan, S. H., & Barker, N. (2016) · Nature Cell Biology · doi:10.1038/ncb3312 · Cited by 1,508 · see citing works
Designer matrices for intestinal stem cell and organoid culture
Gjorevski, N., Sachs, N., Manfrin, A., Giger, S., Bragina, M. E., Ordóñez-Morán, P., Clevers, H., & Lutolf, M. P. (2016) · Nature · doi:10.1038/nature20168 · Cited by 1,426 · see citing works
Self-citationSchwank, G., Koo, B.-K., Sasselli, V., Dekkers, J. F., Heo, I., Demircan, T., Sasaki, N., Boymans, S., Cuppen, E., van der Ent, C. K., et al. (2013) · Cell Stem Cell · doi:10.1016/j.stem.2013.11.002 · Cited by 1,424 · see citing works
Self-citationAn integral program for tissue renewal and regeneration: Wnt signaling and stem cell control
Clevers, H. C., Loh, K. M., & Nusse, R. (2014) · Science · doi:10.1126/science.1248012 · Cited by 1,351 · see citing works
Self-citationAdult intestinal stem cells: critical drivers of epithelial homeostasis and regeneration
Barker, N. (2013) · Nature Reviews Molecular Cell Biology · doi:10.1038/nrm3721 · Cited by 1,334 · see citing works
The intestinal epithelial barrier: a therapeutic target?
Odenwald, M. A., & Turner, J. R. (2017) · Nature Reviews Gastroenterology & Hepatology · doi:10.1038/nrgastro.2016.169 · Cited by 1,288 · see citing works
The intestinal crypt, a prototype stem cell compartment
Clevers, H. (2013) · Cell · doi:10.1016/j.cell.2013.07.004 · Cited by 1,223 · see citing works
Self-citationAn in vivo model of functional and vascularized human brain organoids
Mansour, A. A., Gonçalves, J. T., Bloyd, C. W., Li, H., Fernandes, S., Quang, D., Johnston, S., Parylak, S. L., Jin, X., & Gage, F. H. (2018) · Nature Biotechnology · doi:10.1038/nbt.4127 · Cited by 1,211 · see citing works
Progress and potential in organoid research
Rossi, G., Manfrin, A., & Lutolf, M. P. (2018) · Nature Reviews Genetics · doi:10.1038/s41576-018-0051-9 · Cited by 1,182 · see citing works
Growing Self-Organizing Mini-Guts from a Single Intestinal Stem Cell: Mechanism and Applications
Sato, T., & Clevers, H. (2013) · Science · doi:10.1126/science.1234852 · Cited by 1,170 · see citing works
Self-citationTales from the crypt: new insights into intestinal stem cells
Gehart, H., & Clevers, H. C. (2018) · Nature Reviews Gastroenterology & Hepatology · doi:10.1038/s41575-018-0081-y · Cited by 984 · see citing works
Self-citationZhao, Z., Chen, X., Dowbaj, A. M., Sljukic, A., Bratlie, K., Lin, L., Fong, E. L. S., Balachander, G. M., Chen, Z., Soragni, A., et al. (2022) · Nature Reviews Methods Primers · doi:10.1038/s43586-022-00174-y · Cited by 1,001 · see citing works
Tumour suppressor RNF43 is a stem-cell E3 ligase that induces endocytosis of Wnt receptors
Koo, B., Spit, M., Jordens, I., Low, T. Y., Stange, D. E., van de Wetering, M., van Es, J. H., Mohammed, S., Heck, A. J. R., Maurice, M. M., et al. (2012) · Nature · doi:10.1038/nature11308 · Cited by 991 · see citing works
Self-citationEngineering Stem Cell Organoids
Yin, X., Mead, B. E., Safaee, H., Langer, R., Karp, J. M., & Levy, O. (2016) · Cell Stem Cell · doi:10.1016/j.stem.2015.12.005 · Cited by 866 · see citing works
Three-Dimensional Cell Cultures in Drug Discovery and Development
Fang, Y., & Eglen, R. M. (2017) · SLAS Discovery · doi:10.1177/1087057117696795 · Cited by 849 · see citing works
Disease modeling in stem cell-derived 3D organoid systems
Dutta, D., Heo, I., & Clevers, H. (2017) · Trends in Molecular Medicine · doi:10.1016/j.molmed.2017.02.007 · Cited by 838 · see citing works
Self-citationThe Impact of Food Bioactives on Health
Verhoeckx, K. C. M., Cotter, P., López-Expósito, I., Kleiveland, C., Lea, T., Mackie, A. R., Requena, T., Swiatecka, D., & Wichers, H. J. (2015) · Springer eBooks · doi:10.1007/978-3-319-16104-4 · Cited by 816 · see citing works
The Lgr5 intestinal stem cell signature: robust expression of proposed quiescent ‘+4’ cell markers
Muñoz, J., Stange, D. E., Schepers, A. G., van de Wetering, M., Koo, B., Itzkovitz, S., Volckmann, R., Kung, K. S., Köster, J., Radulescu, S., et al. (2012) · The EMBO Journal · doi:10.1038/emboj.2012.166 · Cited by 758 · see citing works
Self-citationIdentification of Multipotent Luminal Progenitor Cells in Human Prostate Organoid Cultures
Karthaus, W. R., Iaquinta, P. J., Drost, J., Gracanin, A., van Boxtel, R., Wongvipat, J., Dowling, C., Gao, D., Begthel, H., Sachs, N., et al. (2014) · Cell · doi:10.1016/j.cell.2014.08.017 · Cited by 720 · see citing works
Self-citationThree-dimensional organotypic culture: experimental models of mammalian biology and disease
Shamir, E. R., & Ewald, A. J. (2014) · Nature Reviews Molecular Cell Biology · doi:10.1038/nrm3873 · Cited by 719 · see citing works
Paneth Cells: Maestros of the Small Intestinal Crypts
Clevers, H. C., & Bevins, C. L. (2013) · Annual Review of Physiology · doi:10.1146/annurev-physiol-030212-183744 · Cited by 698 · see citing works
Self-citationYAP/TAZ-Dependent Reprogramming of Colonic Epithelium Links ECM Remodeling to Tissue Regeneration
Yui, S., Azzolin, L., Maimets, M., Pedersen, M. T., Fordham, R. P., Hansen, S. L., Larsen, H. L., Guiu, J., Alves, M. R. P., Rundsten, C. F., et al. (2017) · Cell stem cell · doi:10.1016/j.stem.2017.11.001 · Cited by 678 · see citing works
Self-citationTreatment of Inflammatory Bowel Disease: A Comprehensive Review
Cai, Z., Wang, S., & Li, J. (2021) · Frontiers in Medicine · doi:10.3389/fmed.2021.765474 · Cited by 697 · see citing works
Spermidine improves gut barrier integrity and gut microbiota function in diet-induced obese mice
Ma, L., Ni, Y., Wang, Z., Tu, W., Ni, L., Zhuge, F., Zheng, A., Hu, L., Zhao, Y., Zheng, L., et al. (2020) · Gut Microbes · doi:10.1080/19490976.2020.1832857 · Cited by 596 · see citing works
Preparing the ground for tissue regeneration: from mechanism to therapy
Forbes, S. J., & Rosenthal, N. A. (2014) · Nature Medicine · doi:10.1038/nm.3653 · Cited by 585 · see citing works
An in vivo model of human small intestine using pluripotent stem cells
Watson, C. L., Mahe, M. M., Múnera, J., Howell, J., Sundaram, N., Poling, H. M., Schweitzer, J. I., Vallance, J. E., Mayhew, C., Sun, Y., et al. (2014) · Nature Medicine · doi:10.1038/nm.3737 · Cited by 550 · see citing works
Corrò, C., Novellasdemunt, L., & Li, V. S. W. (2020) · American Journal of Physiology-Cell Physiology · doi:10.1152/ajpcell.00120.2020 · Cited by 561 · see citing works
Synthetic hydrogels for human intestinal organoid generation and colonic wound repair
Cruz-Acuña, R., Quirós, M., Farkas, A. E., Dedhia, P. H., Huang, S., Siuda, D., García-Hernández, V., Miller, A. J., Spence, J. R., Nusrat, A., et al. (2017) · Nature Cell Biology · doi:10.1038/ncb3632 · Cited by 558 · see citing works
An evolutionary perspective on field cancerization
Curtius, K., Wright, N. A., & Graham, T. A. (2017) · Nature reviews. Cancer · doi:10.1038/nrc.2017.102 · Cited by 533 · see citing works
Human Organoids: Tools for Understanding Biology and Treating Diseases
Schutgens, F., & Clevers, H. C. (2019) · Annual Review of Pathology Mechanisms of Disease · doi:10.1146/annurev-pathmechdis-012419-032611 · Cited by 506 · see citing works
Self-citationWnt signaling in stem and cancer stem cells
Holland, J. D., Klaus‐Bergmann, A., Garratt, A. N., & Birchmeier, W. (2013) · Current Opinion in Cell Biology · doi:10.1016/j.ceb.2013.01.004 · Cited by 504 · see citing works
Human organoids in basic research and clinical applications
Tang, X.-Y., Wu, S., Wang, D., Chu, C., Hong, Y., Tao, M., Hu, H., Xu, M., Guo, X. L., & Liu, Y. (2022) · Signal Transduction and Targeted Therapy · doi:10.1038/s41392-022-01024-9 · Cited by 509 · see citing works
Organoids: Modeling Development and the Stem Cell Niche in a Dish
Kretzschmar, K., & Clevers, H. C. (2016) · Developmental Cell · doi:10.1016/j.devcel.2016.08.014 · Cited by 480 · see citing works
Self-citationLukovac, S., Belzer, C., Pellis, L., Keijser, B. J. F., de Vos, W. M., Montijn, R. C., & Roeselers, G. (2014) · mBio · doi:10.1128/mbio.01438-14 · Cited by 476 · see citing works
The Intestinal Barrier and Current Techniques for the Assessment of Gut Permeability
Schoultz, I., & Keita, Å. V. (2020) · Cells · doi:10.3390/cells9081909 · Cited by 479 · see citing works
Boretto, M., Cox, B., Noben, M., Hendriks, N., Fassbender, A., Roose, H., Amant, F., Timmerman, D., Tomassetti, C., Vanhie, A., et al. (2017) · Development · doi:10.1242/dev.148478 · Cited by 459 · see citing works
Towards organoid culture without Matrigel
Kozlowski, M. T., Crook, C. J., & Ku, H. T. (2021) · Communications Biology · doi:10.1038/s42003-021-02910-8 · Cited by 409 · see citing works
Next-generation regenerative medicine: organogenesis from stem cells in 3D culture.
Sasai, Y. (2013) · Cell Stem Cell · doi:10.1016/j.stem.2013.04.009 · Cited by 388 · see citing works
Fordham, R. P., Yui, S., Hannan, N. R. F., Soendergaard, C., Madgwick, A., Schweiger, P. J., Nielsen, O. H., Vallier, L., Pedersen, R. A., Nakamura, T., et al. (2013) · Cell stem cell · doi:10.1016/j.stem.2013.09.015 · Cited by 397 · see citing works
Self-citationVascularized human cortical organoids (vOrganoids) model cortical development in vivo
Shi, Y., Sun, L., Liu, J., Zhong, S., Wang, M., Li, R., Li, P., Guo, L., Fang, A., Chen, R., et al. (2020) · PLoS Biology · doi:10.1371/journal.pbio.3000705 · Cited by 401 · see citing works
Long-lived intestinal tuft cells serve as colon cancer–initiating cells
Westphalen, C. B., Asfaha, S., Hayakawa, Y., Takemoto, Y., Lukin, D. J., Nuber, A. H., Brandtner, A. K., Setlik, W., Remotti, H. E., Muley, A., et al. (2014) · Journal of Clinical Investigation · doi:10.1172/jci73434 · Cited by 383 · see citing works
Testa, U., Pelosi, E., & Castelli, G. (2018) · Medical Sciences · doi:10.3390/medsci6020031 · Cited by 380 · see citing works
Kim, S., Min, S., Choi, Y. S., Jo, S.-H., Jung, J. H., Han, K., Kim, J., An, S., Ji, Y. W., Kim, Y.-G., et al. (2022) · Nature Communications · doi:10.1038/s41467-022-29279-4 · Cited by 375 · see citing works
Colorectal Cancer Stem Cells: From the Crypt to the Clinic
Zeuner, A., Todaro, M., Stassi, G., & Maria, R. D. (2014) · Cell stem cell · doi:10.1016/j.stem.2014.11.012 · Cited by 370 · see citing works
Organoids — Preclinical Models of Human Disease
Li, M., & Belmonte, J. C. I. (2019) · New England Journal of Medicine · doi:10.1056/nejmra1806175 · Cited by 360 · see citing works
Wnt signaling in adult intestinal stem cells and cancer
Krausová, M., & Kořínek, V. (2013) · Cellular Signalling · doi:10.1016/j.cellsig.2013.11.032 · Cited by 362 · see citing works
Generation of functional thyroid from embryonic stem cells
Antonica, F., Kasprzyk, D. F., Opitz, R., Iacovino, M., Liao, X.-H., Dumitrescu, A. M., Refetoff, S., Peremans, K., Manto, M., Kyba, M., et al. (2012) · Nature · doi:10.1038/nature11525 · Cited by 359 · see citing works
Single luminal epithelial progenitors can generate prostate organoids in culture
Chua, C. W., Shibata, M., Lei, M., Toivanen, R., Barlow, L. J., Bergren, S. K., Badani, K. K., McKiernan, J. M., Benson, M. C., Hibshoosh, H. H., et al. (2014) · Nature Cell Biology · doi:10.1038/ncb3047 · Cited by 352 · see citing works
In vivo genome editing and organoid transplantation models of colorectal cancer and metastasis
Roper, J., Tammela, T., Cetinbas, N. M., Akkad, A., Roghanian, A., Rickelt, S., Almeqdadi, M., Wu, K., Oberli, M. A., Rivera, F. J. S., et al. (2017) · Nature Biotechnology · doi:10.1038/nbt.3836 · Cited by 350 · see citing works
Human tissues in a dish: The research and ethical implications of organoid technology
Bredenoord, A. L., Clevers, H., & Knoblich, J. A. (2017) · Science · doi:10.1126/science.aaf9414 · Cited by 334 · see citing works
Self-citationCritical Role for the DNA Sensor AIM2 in Stem Cell Proliferation and Cancer
Man, S. M., Zhu, Q., Zhu, L., Liu, Z., Karki, R., Malik, A., Sharma, D., Li, L., Malireddi, R. K. S., Gurung, P., et al. (2015) · Cell · doi:10.1016/j.cell.2015.06.001 · Cited by 331 · see citing works
Identifying the Stem Cell of the Intestinal Crypt: Strategies and Pitfalls
Barker, N., van Oudenaarden, A., & Clevers, H. C. (2012) · Cell stem cell · doi:10.1016/j.stem.2012.09.009 · Cited by 320 · see citing works
Self-citationZhang, Y., Tu, S., Ji, X., Wu, J., Meng, J., Gao, J., Shao, X., Shi, S., Gan, W., Qiu, J., et al. (2024) · Nature Communications · doi:10.1038/s41467-024-45636-x · Cited by 319 · see citing works
Establishment of Gastrointestinal Epithelial Organoids
Mahé, M. M., Aihara, E., Schumacher, M. A., Zavros, Y. L., Montrose, M. H., Helmrath, M. A., Sato, T., & Shroyer, N. F. (2013) · Current Protocols in Mouse Biology · doi:10.1002/9780470942390.mo130179 · Cited by 308 · see citing works
Self-citationThe intestinal epithelium tuft cells: specification and function
Gerbe, F., Legraverend, C., & Jay, P. (2012) · Cellular and Molecular Life Sciences · doi:10.1007/s00018-012-0984-7 · Cited by 299 · see citing works
WNT Signaling and Colorectal Cancer
Schatoff, E. M., Leach, B. I., & Dow, L. E. (2017) · Current Colorectal Cancer Reports · doi:10.1007/s11888-017-0354-9 · Cited by 291 · see citing works
Autophagy protein ATG16L1 prevents necroptosis in the intestinal epithelium
Matsuzawa, Y., Shono, Y., Gomez, L. E., Hubbard-Lucey, V. M., Cammer, M., Neil, J. A., Dewan, M. Z., Lieberman, S. R., Lazrak, A., Marinis, J. M., et al. (2017) · The Journal of Experimental Medicine · doi:10.1084/jem.20170558 · Cited by 289 · see citing works
Porcine models of digestive disease: the future of large animal translational research
Gonzalez, L. M., Moeser, A. J., & Blikslager, A. T. (2015) · Translational research · doi:10.1016/j.trsl.2015.01.004 · Cited by 278 · see citing works
Dissecting Engineered Cell Types and Enhancing Cell Fate Conversion via CellNet
Morris, S. A., Cahan, P., Li, H., Zhao, A., Roman, A. K. S., Shivdasani, R. A., Collins, J. J., & Daley, G. Q. (2014) · Cell · doi:10.1016/j.cell.2014.07.021 · Cited by 267 · see citing works
Mechanisms of mucosal healing: treating inflammatory bowel disease without immunosuppression?
Villablanca, E. J., Selin, K., & Hedin, C. R. H. (2022) · Nature Reviews Gastroenterology & Hepatology · doi:10.1038/s41575-022-00604-y · Cited by 258 · see citing works
Wnt some lose some: transcriptional governance of stem cells by Wnt/β-catenin signalingPreprint
Lien, W., & Fuchs, E. V. (2014) · Genes & Development · doi:10.1101/gad.244772.114 · Cited by 252 · see citing works
Adult mammalian stem cells: the role of Wnt, Lgr5 and R‐spondins
Schuijers, J., & Clevers, H. C. (2012) · The EMBO Journal · doi:10.1038/emboj.2012.149 · Cited by 247 · see citing works
Self-citationOrganoid Models of Human Gastrointestinal Development and Disease
Dedhia, P. H., Bertaux‐Skeirik, N., Zavros, Y. L., & Spence, J. R. (2016) · Gastroenterology · doi:10.1053/j.gastro.2015.12.042 · Cited by 246 · see citing works
O’Rourke, K. P., Loizou, E., Livshits, G., Schatoff, E. M., Baslan, T., Manchado, E., Simon, J. M., Romesser, P. B., Leach, B. I., Han, T., et al. (2017) · Nature Biotechnology · doi:10.1038/nbt.3837 · Cited by 237 · see citing works
Human Salivary Gland Stem Cells Functionally Restore Radiation Damaged Salivary Glands
Pringle, S. A., Maimets, M., van der Zwaag, M., Stokman, M. A., van Gosliga, D., Zwart, E., Witjes, M. J. H., de Haan, G., van Os, R. P., & Coppes, R. P. (2016) · Stem Cells · doi:10.1002/stem.2278 · Cited by 225 · see citing works
Organ-on-a-Chip for Cancer and Immune Organs Modeling
Sun, W., Luo, Z., Lee, J., Kim, H., Lee, K., Tebon, P., Feng, Y., Dokmeci, M. R., Sengupta, S., & Khademhosseini, A. (2019) · Advanced Healthcare Materials · doi:10.1002/adhm.201801363 · Cited by 221 · see citing works
Zhu, P., Zhu, X., Wu, J., He, L., Lu, T., Wang, Y., Liu, B., Ye, B., Sun, L., Fan, D., et al. (2019) · Nature Immunology · doi:10.1038/s41590-018-0297-6 · Cited by 217 · see citing works
Stem cell-derived organoids and their application for medical research and patient treatment
Bartfeld, S., & Clevers, H. C. (2017) · Journal of Molecular Medicine · doi:10.1007/s00109-017-1531-7 · Cited by 219 · see citing works
Self-citationA matter of life and death: self‐renewal in stem cells
Fuchs, E. V., & Chen, T. (2012) · EMBO Reports · doi:10.1038/embor.2012.197 · Cited by 210 · see citing works
Mini-Gut Organoids: Reconstitution of the Stem Cell Niche
Date, S., & Sato, T. (2015) · Annual Review of Cell and Developmental Biology · doi:10.1146/annurev-cellbio-100814-125218 · Cited by 205 · see citing works
Self-citationRole of epithelial cells in the pathogenesis and treatment of inflammatory bowel disease
Okamoto, R., & Watanabe, M. (2015) · Journal of Gastroenterology · doi:10.1007/s00535-015-1098-4 · Cited by 203 · see citing works
Self-citationIn vitro organogenesis in three dimensions: self-organising stem cells
Sasai, Y., Eiraku, M., & Suga, H. (2012) · Development · doi:10.1242/dev.079590 · Cited by 201 · see citing works
CRISPR-Cas9: a new and promising player in gene therapy
Xiao-Jie, L., Hui-Ying, X., Zun-Ping, K., Jin-Lian, C., & Li-Juan, J. (2015) · Journal of Medical Genetics · doi:10.1136/jmedgenet-2014-102968 · Cited by 200 · see citing works
Clonal evolution of colorectal cancer in IBD
Choi, C.-H. R., Bakir, I. A., Hart, A. L., & Graham, T. A. (2017) · Nature Reviews Gastroenterology & Hepatology · doi:10.1038/nrgastro.2017.1 · Cited by 197 · see citing works
Reconstruction of the Human Colon Epithelium In Vivo
Sugimoto, S., Ohta, Y., Fujii, M., Matano, M., Shimokawa, M., Nanki, K., Date, S., Nishikori, S., Nakazato, Y., Nakamura, T., et al. (2018) · Cell Stem Cell · doi:10.1016/j.stem.2017.11.012 · Cited by 196 · see citing works
Self-citationUse and application of 3D-organoid technology
Artegiani, B., & Clevers, H. C. (2018) · Human Molecular Genetics · doi:10.1093/hmg/ddy187 · Cited by 190 · see citing works
Self-citationHuman airway organoid engineering as a step toward lung regeneration and disease modeling
Tan, Q., Choi, K. M., Sicard, D., & Tschumperlin, D. J. (2017) · Biomaterials · doi:10.1016/j.biomaterials.2016.10.046 · Cited by 191 · see citing works
Cloning and variation of ground state intestinal stem cells
Wang, X., Yamamoto, Y., Wilson, L., Zhang, T., Howitt, B. E., Farrow, M. A., Kern, F., Ning, G., Yue, H., Khor, C. C., et al. (2015) · Nature · doi:10.1038/nature14484 · Cited by 187 · see citing works
Nozaki, K., Mochizuki, W., Matsumoto, Y., Matsumoto, T., Fukuda, M., Mizutani, T., Watanabe, M., & Nakamura, T. (2016) · Journal of Gastroenterology · doi:10.1007/s00535-016-1170-8 · Cited by 188 · see citing works
Self-citationFecal Transplants: What Is Being Transferred?
Bojanova, D. P., & Bordenstein, S. R. (2016) · PLoS Biology · doi:10.1371/journal.pbio.1002503 · Cited by 190 · see citing works
Wang, Y., Kim, R., Gunasekara, D. B., Reed, M. I., DiSalvo, M., Nguyen, D. L., Bultman, S. J., Sims, C. E., Magness, S. T., & Allbritton, N. L. (2017) · Cellular and Molecular Gastroenterology and Hepatology · doi:10.1016/j.jcmgh.2017.10.007 · Cited by 184 · see citing works
Bittel, M., Reichert, P., Sarfati, I., Dressel, A., Leikam, S., Uderhardt, S., Stolzer, I., Phu, T. A., Ng, M., Vu, N. K., et al. (2021) · Journal of Extracellular Vesicles · doi:10.1002/jev2.12159 · Cited by 180 · see citing works
福田, 将., Mizutani, T., Mochizuki, W., Matsumoto, T., Nozaki, K., Sakamaki, Y., Ichinose, S., Okada, Y., Tanaka, T., Watanabe, M., et al. (2014) · Genes & Development · doi:10.1101/gad.245233.114 · Cited by 178 · see citing works
Self-citationDevelopment and Characterization of a Human and Mouse Intestinal Epithelial Cell Monolayer Platform
Kozuka, K., He, Y., Koo-McCoy, S., Kumaraswamy, P., Nie, B., Shaw, K., Chan, P., Leadbetter, M., He, L., Lewis, J. G., et al. (2017) · Stem Cell Reports · doi:10.1016/j.stemcr.2017.10.013 · Cited by 179 · see citing works
Wells, J. M., & Spence, J. (2014) · Development · doi:10.1242/dev.097386 · Cited by 168 · see citing works
Stem cells versus plasticity in liver and pancreas regeneration
Kopp, J. L., Grompe, M., & Sander, M. (2016) · Nature Cell Biology · doi:10.1038/ncb3309 · Cited by 176 · see citing works
An organoid-based organ-repurposing approach to treat short bowel syndrome
Sugimoto, S., Kobayashi, E., Fujii, M., Ohta, Y., Arai, K., Matano, M., Ishikawa, K., Miyamoto, K., Toshimitsu, K., Takahashi, S., et al. (2021) · Nature · doi:10.1038/s41586-021-03247-2 · Cited by 175 · see citing works
Self-citationIntestinal organoids for assessing nutrient transport, sensing and incretin secretion
Zietek, T., Rath, E., Haller, D., & Daniel, H. (2015) · Scientific Reports · doi:10.1038/srep16831 · Cited by 167 · see citing works
Imaging organoids: a bright future ahead
Rios, A. C., & Clevers, H. C. (2018) · Nature Methods · doi:10.1038/nmeth.4537 · Cited by 165 · see citing works
Self-citationStem Cells Marked by the R-Spondin Receptor LGR5
Koo, B., & Clevers, H. C. (2014) · Gastroenterology · doi:10.1053/j.gastro.2014.05.007 · Cited by 169 · see citing works
Self-citationGrassi, L., Alfonsi, R., Francescangeli, F., Signore, M., Angelis, M. L. D., Addario, A., Costantini, M., Flex, E., Ciolfi, A., Pizzi, S., et al. (2019) · Cell Death and Disease · doi:10.1038/s41419-019-1453-0 · Cited by 160 · see citing works
Concise Review: Current Status of Three-Dimensional Organoids as Preclinical Models
Kaushik, G., Ponnusamy, M. P., & Batra, S. K. (2018) · Stem Cells · doi:10.1002/stem.2852 · Cited by 156 · see citing works
Tissue Tapes—Phenolic Hyaluronic Acid Hydrogel Patches for Off‐the‐Shelf Therapy
Shin, J., Choi, S., Kim, J. H., Cho, J. H., Jin, Y., Kim, S., Min, S., Kim, S. K., Choi, D., & Cho, S. (2019) · Advanced Functional Materials · doi:10.1002/adfm.201903863 · Cited by 156 · see citing works
Lgr proteins in epithelial stem cell biology
Barker, N., Tan, S., & Clevers, H. C. (2013) · Development · doi:10.1242/dev.083113 · Cited by 153 · see citing works
Self-citationTracing the origin of adult intestinal stem cells
Guiu, J., Hannezo, É., Yui, S., Demharter, S., Ulyanchenko, S., Maimets, M., Jørgensen, A., Perlman, S., Lundvall, L., Mamsen, L., et al. (2019) · Nature · doi:10.1038/s41586-019-1212-5 · Cited by 149 · see citing works
Self-citation
- Authors
- Yui, S., Nakamura, T., Sato, T., Nemoto, Y., Mizutani, T., Zheng, X., Ichinose, S., Nagaishi, T., Okamoto, R., Tsuchiya, K., Clevers, H., & Watanabe, M.
- Affiliations
- Tokyo Medical and Dental University (JP)
- Keio University (JP)
- University Medical Center Utrecht (NL)
- Corresponding author
- Clevers, Hans
- Watanabe, Mamoru
- ORCID
- Venue
- Nature Medicine
- Published
- 2012-03-11
- Volume
- 18
- Issue
- 4
- Pages
- 618-623
- ISSN
- 1078-8956 (ISSN-L)
- 1546-170X
- OpenAlex
- W2143149122
- Cited by
- 805
- References
- 34
- Citations by year
- 2026: 35 · 2025: 47 · 2024: 54 · 2023: 43 · 2022: 67 · 2021: 57 · 2020: 57 · 2019: 57 · 2018: 56 · 2017: 100 · 2016: 58 · 2015: 58 · 2014: 44 · 2013: 50 · 2012: 21
- FWCI
- 27.36
- Type
- journal article
- Language
- en
- Open access
- closed
- Locations
- Nature Medicine (publishedVersion)
- PubMed (publishedVersion)
- KNAW Research Portal (The Royal Netherlands Academy of Arts and Sciences) (publishedVersion)
- Data Archiving and Networked Services (DANS) (submittedVersion)
- Funders
- Japan Society for the Promotion of Science (24590937, 22590694, 22590696, 21590805, 21590806, 23659394, 24590936, 24390186, 21590803, 23790777, 23590934, 23890204, 24790684, 22590695, 22229005)
- Topics
- Health Sciences › Medicine › Oncology › Cancer Cells and Metastasis
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Pluripotent Stem Cells Research
- Health Sciences › Medicine › Surgery › Tissue Engineering and Regenerative Medicine
- Keywords
- Lgr5+ stem cells, colonic stem cells, colon organoids, stem cell therapy, in vitro expansion, DSS-induced colitis, acute colitis, epithelial repair, gastrointestinal diseases
- MeSH terms
- Animals, Body Weight, Cells, Cultured, Colon, DNA-Binding Proteins, Epithelium, Membrane Proteins, Mice, Transgenic, Organoids, Rhodamines, Time Factors, Ki-67 Antigen, Transplants, Receptors, G-Protein-Coupled, Green Fluorescent Proteins, Mice, Cyclooxygenase 1, Chromogranin A, Adult Stem Cells, In Vitro Techniques
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review