The genomics of selection in dogs and the parallel evolution between dogs and humans

The Sequence Alignment/Map format and SAMtools

Li, H., Handsaker, B., Wysoker, A., Fennell, T., Ruan, J., Homer, N., Marth, G., Abecasis, G., Durbin, R., & 1000 Genome Project Data Processing Subgroup (2009) · Bioinformatics · doi:10.1093/bioinformatics/btp352 · Cited by 62,041

Fast and accurate short read alignment with Burrows-Wheeler transform

Li, H., & Durbin, R. (2009) · Bioinformatics · doi:10.1093/bioinformatics/btp324 · Cited by 58,607

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

Huang, D. W., Sherman, B. T., & Lempicki, R. A. (2009) · Nature Protocols · doi:10.1038/nprot.2008.211 · Cited by 35,890

Inference of Population Structure Using Multilocus Genotype Data

Pritchard, J. K., Stephens, M., & Donnelly, P. (2000) · Genetics · doi:10.1093/genetics/155.2.945 · Cited by 33,871

ESTIMATING F -STATISTICS FOR THE ANALYSIS OF POPULATION STRUCTURE

Weir, B. S., & Cockerham, C. C. (1984) · Evolution · doi:10.1111/j.1558-5646.1984.tb05657.x · Cited by 18,909

Fast and accurate long-read alignment with Burrows-Wheeler transform.

Li, H., & Durbin, R. (2010) · Bioinformatics · doi:10.1093/bioinformatics/btp698 · Cited by 12,063

Estimating F-Statistics for the Analysis of Population Structure

Weir, B. S., & Cockerham, C. C. (1984) · Evolution · doi:10.2307/2408641 · Cited by 11,023

Principal components analysis corrects for stratification in genome-wide association studies

Price, A. L., Patterson, N. J., Plenge, R. M., Weinblatt, M. E., Shadick, N. A., & Reich, D. (2006) · Nature Genetics · doi:10.1038/ng1847 · Cited by 10,248

Stress and the brain: from adaptation to disease

de Kloet, E. R., Joëls, M., & Holsboer, F. (2005) · Nature Reviews Neuroscience · doi:10.1038/nrn1683 · Cited by 4,621

Pleiotropy, natural selection, and the evolution of senescence.

Williams, G. C. (1957) · Evolution · doi:10.1111/j.1558-5646.1957.tb02911.x · Cited by 4,279

Genome sequencing highlights the dynamic early history of dogs

Freedman, A. H., Gronau, I., Schweizer, R. M., Ortega-Del Vecchyo, D., Han, E., Silva, P. M., Galaverni, M., Fan, Z., Marx, P., Lorente-Galdos, B., et al. (2014) · PLoS Genetics · doi:10.1371/journal.pgen.1004016 · Cited by 624

Complete Mitochondrial Genomes of Ancient Canids Suggest a European Origin of Domestic Dogs

Thalmann, O., Shapiro, B., Cui, P., Schuenemann, V. J., Sawyer, S., Greenfield, D., Germonpré, M., Sablin, M., López‐Giráldez, F., Domingo‐Roura, X., et al. (2013) · Science · doi:10.1126/science.1243650 · Cited by 554

The BIG Data Center: from deposition to integration to translation

BIG Data Center Members (2016) · Nucleic Acids Research · doi:10.1093/nar/gkw1060 · Cited by 516

Genomic and archaeological evidence suggest a dual origin of domestic dogs

Frantz, L. A. F., Mullin, V. E., Pionnier-Capitan, M., Lebrasseur, O., Ollivier, M., Perri, A., Linderholm, A., Mattiangeli, V., Teasdale, M. D., Dimopoulos, E. A., et al. (2016) · Science · doi:10.1126/science.aaf3161 · Cited by 430

Bottlenecks and Selective Sweeps during Domestication Have Increased Deleterious Genetic Variation in Dogs

Marsden, C. D., Ortega-Del Vecchyo, D., O’Brien, D. P., Taylor, J. F., Ramirez, O., Vilà, C., Marques-Bonet, T., Schnabel, R. D., Wayne, R. K., & Lohmueller, K. E. (2016) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1512501113 · Cited by 333

Ancient Wolf Genome Reveals an Early Divergence of Domestic Dog Ancestors and Admixture into High-Latitude Breeds

Skoglund, P., Ersmark, E., Palkopoulou, E., & Dalén, L. (2015) · Current Biology · doi:10.1016/j.cub.2015.04.019 · Cited by 310

Similarity of the dog and human gut microbiomes in gene content and response to diet

Coelho, L. P., Kultima, J. R., Costea, P. I., Fournier, C., Pan, Y., Czarnecki-Maulden, G. L., Hayward, M. R., Forslund, S. K., Schmidt, T., Descombes, P., et al. (2018) · Microbiome · doi:10.1186/s40168-018-0450-3 · Cited by 380

Out of southern East Asia: the natural history of domestic dogs across the world

Wang, G., Zhai, W., Yang, H., Wang, L., Li, Z., Yan-hu, L., Fan, R., Yin, T., Zhu, C., Poyarkov, A. D., et al. (2015) · Cell Research · doi:10.1038/cr.2015.147 · Cited by 363

Origins and genetic legacy of prehistoric dogs

Bergström, A., Frantz, L., Schmidt, R., Ersmark, E., Lebrasseur, O., Girdland-Flink, L., Lin, A. T., Storå, J., Sjögren, K.-G., Anthony, D., et al. (2020) · Science · doi:10.1126/science.aba9572 · Cited by 297

863 genomes reveal the origin and domestication of chicken

Wang, M.-S., Thakur, M., Peng, M.-S., Jiang, Y., Frantz, L. A. F., Li, M., Zhang, J.-J., Wang, S., Peters, J., Otecko, N. O., et al. (2020) · Cell Research · doi:10.1038/s41422-020-0349-y · Cited by 286

Ancient European dog genomes reveal continuity since the Early Neolithic

Botigué, L. R., Song, S., Scheu, A., Gopalan, S., Pendleton, A. L., Oetjens, M. T., Oill, A. M. T., Seregély, T., Zeeb‐Lanz, A., Arbogast, R., et al. (2017) · Nature Communications · doi:10.1038/ncomms16082 · Cited by 275

Pervasive introgression facilitated domestication and adaptation in the Bos species complex

Wu, D., Ding, X., Wang, S., Wójcik, J. M., Zhang, Y., Tokarska, M., Li, Y., Wang, M.-S., Faruque, O., Nielsen, R., et al. (2018) · Nature Ecology & Evolution · doi:10.1038/s41559-018-0562-y · Cited by 249

Worldwide patterns of genomic variation and admixture in gray wolves

Fan, Z., Silva, P., Gronau, I., Wang, S., Armero, A. S., Schweizer, R. M., Ramirez, O., Pollinger, J., Galaverni, M., Ortega Del-Vecchyo, D., et al. (2016) · Genome Research · doi:10.1101/gr.197517.115 · Cited by 209

Genetic structure in village dogs reveals a Central Asian domestication origin

Shannon, L. M., Boyko, R. H., Castelhano, M. G., Corey, E. E., Hayward, J. J., McLean, C., White, M. E., Said, M. A., Anita, B. A., Ikombe, N. B., et al. (2015) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1516215112 · Cited by 242

Whole-genome sequencing of six dog breeds from continuous altitudes reveals adaptation to high-altitude hypoxiaPreprint

Gou, X., Wang, Z., Li, N., Qiu, F., Xu, Z., Yan, D., Yang, S., Jia, J., Kong, X., Wei, Z., et al. (2014) · Genome Research · doi:10.1101/gr.171876.113 · Cited by 216

The taming of the neural crest: a developmental perspective on the origins of morphological covariation in domesticated mammals.

Sánchez-Villagra, M. R., Geiger, M., & Schneider, R. A. (2016) · Royal Society Open Science · doi:10.1098/rsos.160107 · Cited by 195

The Genome Landscape of Tibetan Sheep Reveals Adaptive Introgression from Argali and the History of Early Human Settlements on the Qinghai–Tibetan Plateau

Hu, X., Yang, J. H., Xie, X.-L., Lv, F., Cao, Y.-H., Li, W., Liu, M., Wang, Y., Li, J., Liu, Y., et al. (2018) · Molecular Biology and Evolution · doi:10.1093/molbev/msy208 · Cited by 193

Comparison of village dog and wolf genomes highlights the role of the neural crest in dog domestication

Pendleton, A. L., Shen, F., Taravella, A. M., Emery, S., Veeramah, K. R., Boyko, A. R., & Kidd, J. M. (2018) · BMC Biology · doi:10.1186/s12915-018-0535-2 · Cited by 156

Self-domestication in Homo sapiens: Insights from comparative genomics

Theofanopoulou, C., Gastaldon, S., O’Rourke, T., Samuels, B. D., Messner, A., Martins, P. T., Delogu, F., Alamri, S., & Boeckx, C. (2017) · PLOS ONE · doi:10.1371/journal.pone.0185306 · Cited by 174

Concise Review: Stem Cell Trials Using Companion Animal Disease Models

Hoffman, A. M., & DOW, S. W. (2016) · Stem Cells · doi:10.1002/stem.2377 · Cited by 167

A Systematic Review of Research on Pet Ownership and Animal Interactions among Older Adults

Gee, N. R., & Mueller, M. K. (2019) · Anthrozoös · doi:10.1080/08927936.2019.1569903 · Cited by 185

Interspecific Gene Flow Shaped the Evolution of the Genus Canis

Gopalakrishnan, S., Sinding, M. S., Ramos‐Madrigal, J., Niemann, J., Castruita, J. A. S., Vieira, F. G., Carøe, C., de Manuel, M., Kuderna, L. F. K., Serres, A., et al. (2018) · Current Biology · doi:10.1016/j.cub.2018.08.041 · Cited by 157

Red fox genome assembly identifies genomic regions associated with tame and aggressive behaviours

Kukekova, A. V., Johnson, J. L., Xiang, X., Feng, S., Liu, S., Rando, H. M., Kharlamova, A. V., Herbeck, Y., Serdyukova, N. A., Xiong, Z., et al. (2018) · Nature Ecology & Evolution · doi:10.1038/s41559-018-0611-6 · Cited by 145

Genetic Convergence in the Adaptation of Dogs and Humans to the High-Altitude Environment of the Tibetan Plateau

Wang, G., Fan, R., Zhai, W., Liu, F., Wang, L., Li, Z., Wu, H., Yang, H., Wu, S., Zhu, C., et al. (2014) · Genome Biology and Evolution · doi:10.1093/gbe/evu162 · Cited by 149

Highly heritable and functionally relevant breed differences in dog behaviour

MacLean, E. L., Snyder-Mackler, N., vonHoldt, B. M., & Serpell, J. A. (2019) · Proceedings of the Royal Society B: Biological Sciences · doi:10.1098/rspb.2019.0716 · Cited by 144

The Emotional Lives of Companion Animals: Attachment and Subjective Claims by Owners of Cats and Dogs

Martens, P., Enders‐Slegers, M., & Walker, J. K. (2016) · Anthrozoös · doi:10.1080/08927936.2015.1075299 · Cited by 128

Genomic regions under selection in the feralization of the dingoes

Zhang, S., Wang, G., Ma, P., Zhang, L., Yin, T., Yan-hu, L., Otecko, N. O., Wang, M., Ma, Y., Wang, L., et al. (2020) · Nature Communications · doi:10.1038/s41467-020-14515-6 · Cited by 130

3D morphometric analysis of fossil canid skulls contradicts the suggested domestication of dogs during the late Paleolithic

Drake, A. G., Coquerelle, M., & Colombeau, G. (2015) · Scientific Reports · doi:10.1038/srep08299 · Cited by 122

Diet adaptation in dog reflects spread of prehistoric agriculture

Arendt, M. L., Cairns, K. M., Ballard, J. W. O., Savolainen, P., & Axelsson, E. (2016) · Heredity · doi:10.1038/hdy.2016.48 · Cited by 124

Domestication Genomics: Evidence from Animals

Wang, G., Xie, H., Peng, M., Irwin, D. M., & Zhang, Y. (2013) · Annual Review of Animal Biosciences · doi:10.1146/annurev-animal-022513-114129 · Cited by 122

Deciphering the Origin of Dogs: From Fossils to Genomes

Freedman, A. H., & Wayne, R. K. (2016) · Annual Review of Animal Biosciences · doi:10.1146/annurev-animal-022114-110937 · Cited by 129

A new look at an old dog: Bonn-Oberkassel reconsidered

Janssens, L., Giemsch, L., Schmitz, R. W., Street, M., Dongen, S. V., & Crombé, P. (2018) · Journal of Archaeological Science · doi:10.1016/j.jas.2018.01.004 · Cited by 124

The Wayward Dog: Is the Australian native dog or Dingo a distinct species?

Jackson, S., Groves, C. P., Fleming, P. J. S., Aplin, K. P., Eldridge, M. D. B., GONZALEZ, A., & Helgen, K. M. (2017) · Zootaxa · doi:10.11646/zootaxa.4317.2.1 · Cited by 114

Dog10K: an international sequencing effort to advance studies of canine domestication, phenotypes and health

Ostrander, E. A., Wang, G., Larson, G., vonHoldt, B. M., Davis, B. W., Jagannathan, V., Hitte, C., Wayne, R. K., Zhang, Y.-P., André, C., et al. (2019) · National Science Review · doi:10.1093/nsr/nwz049 · Cited by 121

Joint estimates of heterozygosity and runs of homozygosity for modern and ancient samples

Renaud, G., Hanghøj, K., Korneliussen, T. S., Willerslev, E., & Orlando, L. (2019) · Genetics · doi:10.1534/genetics.119.302057 · Cited by 101

Demographically-based evaluation of genomic regions under selection in domestic dogs

Freedman, A. H., Schweizer, R. M., Ortega-Del Vecchyo, D., Han, E., Davis, B. W., Gronau, I., Silva, P. M., Galaverni, M., Fan, Z., Marx, P., et al. (2016) · PLoS Genetics · doi:10.1371/journal.pgen.1005851 · Cited by 104

Arctic-adapted dogs emerged at the Pleistocene–Holocene transition

Sinding, M.-H. S., Gopalakrishnan, S., Ramos-Madrigal, J., de Manuel, M., Pitulko, V. V., Kuderna, L., Feuerborn, T. R., Frantz, L. A. F., Vieira, F. G., Niemann, J., et al. (2020) · Science · doi:10.1126/science.aaz8599 · Cited by 103

Dogs’ comprehension of referential emotional expressions: familiar people and familiar emotions are easier

Merola, I., Prato‐Previde, E., Lazzaroni, M., & Marshall‐Pescini, S. (2013) · Animal Cognition · doi:10.1007/s10071-013-0668-1 · Cited by 111

Population genomics of grey wolves and wolf-like canids in North America

Sinding, M. S., Gopalakrishan, S., Vieira, F. G., Castruita, J. A. S., Raundrup, K., Jørgensen, M. P. H., Meldgaard, M., Petersen, B., Sicheritz‐Pontén, T., Mikkelsen, J. B., et al. (2018) · PLoS Genetics · doi:10.1371/journal.pgen.1007745 · Cited by 103

Nutritional ecology of obesity: from humans to companion animals

Raubenheimer, D., Machovsky‐Capuska, G. E., Gosby, A. K., & Simpson, S. J. (2014) · British Journal Of Nutrition · doi:10.1017/s0007114514002323 · Cited by 95

Archaeological dogs from the Early Holocene Zhokhov site in the Eastern Siberian Arctic

Питулько, В. В., & Kasparov, A. (2017) · Journal of Archaeological Science Reports · doi:10.1016/j.jasrep.2017.04.003 · Cited by 93

DoGSD: the dog and wolf genome SNP database

Bai, B., Zhao, W., Tang, B., Wang, Y.-Q., Wang, L., Zhang, Z., Yang, H., Yan-hu, L., Zhu, J., Irwin, D. M., et al. (2014) · Nucleic Acids Research · doi:10.1093/nar/gku1174 · Cited by 86

Insights into Morphology and Disease from the Dog Genome Project

Schoenebeck, J. J., & Ostrander, E. A. (2014) · Annual Review of Cell and Developmental Biology · doi:10.1146/annurev-cellbio-100913-012927 · Cited by 89

The wolf reference genome sequence (Canis lupus lupus) and its implications for Canis spp. population genomics

Gopalakrishnan, S., Castruita, J. A. S., Sinding, M. S., Kuderna, L. F. K., Räikkönen, J., Petersen, B., Sicheritz‐Pontén, T., Larson, G., Orlando, L., Marquès‐Bonet, T., et al. (2017) · BMC Genomics · doi:10.1186/s12864-017-3883-3 · Cited by 95

Monogamy: Cause, Consequence, or Corollary of Success in Wild Canids?

Macdonald, D. W., Campbell, L., Kamler, J. F., Mariño, J., Werhahn, G., & Sillero‐Zubiri, C. (2019) · Frontiers in Ecology and Evolution · doi:10.3389/fevo.2019.00341 · Cited by 86

Storytelling and story testing in domestication

Gerbault, P., Allaby, R. G., Boivin, N. L., Rudzinski, A., Grimaldi, I. M., Pires, J. C., Vigueira, C. C., Dobney, K. M., Gremillion, K. J., Barton, L., et al. (2014) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1400425111 · Cited by 85

Large canids at the Gravettian Předmostí site, the Czech Republic: The mandible

Germonpré, M., Lázničková‐Galetová, M., Losey, R. J., Räikkönen, J., & Sablin, M. (2014) · Quaternary International · doi:10.1016/j.quaint.2014.07.012 · Cited by 86

Positive selection rather than relaxation of functional constraint drives the evolution of vision during chicken domestication

Wang, M.-S., Zhang, R.-W., Su, L.-Y., Li, Y., Peng, M.-S., Liu, H.-Q., Zeng, L., Irwin, D. M., Du, J.-L., Yao, Y.-G., et al. (2016) · Cell Research · doi:10.1038/cr.2016.44 · Cited by 85

The concerted impact of domestication and transposon insertions on methylation patterns between dogs and grey wolves

Koch, I. J., Clark, M. M., Thompson, M. J., Deere, K. A., Wang, J., Duarte, L., Gnanadesikan, G. E., McCoy, E. L., Rubbi, L., Stahler, D. R., et al. (2015) · Molecular Ecology · doi:10.1111/mec.13480 · Cited by 88

Paleomedicine and the Evolutionary Context of Medicinal Plant Use

Hardy, K. (2020) · Revista Brasileira de Farmacognosia · doi:10.1007/s43450-020-00107-4 · Cited by 83

Feline low-grade alimentary lymphoma: an emerging entity and a potential animal model for human disease

Paulin, M. V., Couronné, L., Béguin, J., Poder, S. L., Delverdier, M. E., Semin, M., Bruneau, J., Cerf–Bensussan, N., Malamut, G., Cellier, C., et al. (2018) · BMC Veterinary Research · doi:10.1186/s12917-018-1635-5 · Cited by 101

Attachment security in companion dogs: adaptation of Ainsworth’s strange situation and classification procedures to dogs and their human caregivers

Solomon, J., Beetz, A., Schöberl, I., Gee, N. R., & Kotrschal, K. M. (2018) · Attachment & Human Development · doi:10.1080/14616734.2018.1517812 · Cited by 92

Genomic Analysis Reveals Hypoxia Adaptation in the Tibetan Mastiff by Introgression of the Grey Wolf from the Tibetan Plateau

Miao, B., Wang, Z., & Li, Y. (2016) · Molecular Biology and Evolution · doi:10.1093/molbev/msw274 · Cited by 83

Amy2Bcopy number variation reveals starch diet adaptations in ancient European dogs

Ollivier, M., Tresset, A., Bastián, F., Lagoutte, L., Axelsson, E., Arendt, M. L., Bălăşescu, A., Marjan, M., Sablin, M., Salanova, L., et al. (2016) · Royal Society Open Science · doi:10.1098/rsos.160449 · Cited by 86

Gut microbiome structure and adrenocortical activity in dogs with aggressive and phobic behavioral disorders

Mondo, E., Barone, M., Soverini, M., D’Amico, F., Cocchi, M., Petrulli, C. A., Mattioli, M., Marliani, G., Candela, M., & Accorsi, P. A. (2020) · Heliyon · doi:10.1016/j.heliyon.2020.e03311 · Cited by 82

The Dogma of Dingoes—Taxonomic status of the dingo: A reply to Smith et al.

Jackson, S., Fleming, P. J. S., Eldridge, M. D. B., Ingleby, S., Flannery, T., Johnson, R. N., Cooper, S. J., Mitchell, K. J., Souilmi, Y., Cooper, A., et al. (2019) · Zootaxa · doi:10.11646/zootaxa.4564.1.7 · Cited by 75

Ancient Hybridization with an Unknown Population Facilitated High-Altitude Adaptation of Canids

Wang, M., Wang, S., Li, Y., Jhala, Y. V., Thakur, M. K., Otecko, N. O., Si, J., Chen, H.-M., Shapiro, B., Nielsen, R., et al. (2020) · Molecular Biology and Evolution · doi:10.1093/molbev/msaa113 · Cited by 80

Genome-wide analysis of UDP-glycosyltransferase super family in Brassica rapa and Brassica oleracea reveals its evolutionary history and functional characterization

Yu, J., Hu, F., Dossa, K., Wang, Z., & Ke, T. (2017) · BMC Genomics · doi:10.1186/s12864-017-3844-x · Cited by 76

Catching a glimpse of the bacterial gut community of companion animals: a canine and feline perspective

Alessandri, G., Argentini, C., Milani, C., Turroni, F., Ossiprandi, M. C., van Sinderen, D., & Ventura, M. (2020) · Microbial Biotechnology · doi:10.1111/1751-7915.13656 · Cited by 76

Recovery of paralyzed limb motor function in canine with complete spinal cord injury following implantation of MSC-derived neural network tissue

Wu, G., Shi, H., Che, M., Huang, M., Wei, Q.-S., Feng, B., Ma, Y., Wang, L., Jiang, B., Wang, Y., et al. (2018) · Biomaterials · doi:10.1016/j.biomaterials.2018.07.010 · Cited by 74

Population genomic analysis reveals that homoploid hybrid speciation can be a lengthy process

Ru, D., Sun, Y., Wang, D., Chen, Y., Wang, T., Hu, Q., Abbott, R. J., & Liu, J. (2018) · Molecular Ecology · doi:10.1111/mec.14909 · Cited by 73

A genome-wide scan for signatures of directional selection in domesticated pigs

Moon, S., Kim, T. H., Lee, K., Kwak, W., Lee, T., Lee, S.-W., Kim, M.-J., Cho, K., Kim, N., Chung, W.-H., et al. (2015) · BMC Genomics · doi:10.1186/s12864-015-1330-x · Cited by 71

On the origin of mongrels: evolutionary history of free-breeding dogs in Eurasia

Pilot, M., Malewski, T., Moura, A. E., Grzybowski, T., Oleński, K., Ruść, A., Kamiński, S., Fadel, F. R., Mills, D. S., Alagaili, A. N., et al. (2015) · Proceedings of the Royal Society B Biological Sciences · doi:10.1098/rspb.2015.2189 · Cited by 70

Identification of genomic variants putatively targeted by selection during dog domestication

Cagan, A., & Blass, T. (2016) · BMC Evolutionary Biology · doi:10.1186/s12862-015-0579-7 · Cited by 69

Reconstructing the history of founder events using genome-wide patterns of allele sharing across individuals

Tournebize, R., Chu, G., & Moorjani, P. (2022) · PLoS Genetics · doi:10.1371/journal.pgen.1010243 · Cited by 71

On the path to extinction: Inbreeding and admixture in a declining grey wolf population

Gómez‐Sánchez, D., Olalde, Í., Sastre, N., Enseñat, C., Carrasco, R., Marquès‐Bonet, T., Lalueza‐Fox, C., Leonard, J. A., Vilà, C., & Ramírez, Ó. (2018) · Molecular Ecology · doi:10.1111/mec.14824 · Cited by 72

Taxonomic status of the Australian dingo: the case for Canis dingo Meyer, 1793

Smith, B. P., Cairns, K. M., Adams, J. W., Newsome, T. M., Fillios, M. A., Déaux, É. C., Parr, W. C., Letnic, M., van Eeden, L. M., Appleby, R. G., et al. (2019) · Zootaxa · doi:10.11646/zootaxa.4564.1.6 · Cited by 68

Genomes of Pleistocene Siberian Wolves Uncover Multiple Extinct Wolf Lineages

Ramos‐Madrigal, J., Sinding, M. S., Carøe, C., Mak, S. S. T., Niemann, J., Castruita, J. A. S., Fedorov, S., Kandyba, A. V., Germonpré, M., Bocherens, H., et al. (2020) · Current Biology · doi:10.1016/j.cub.2020.10.002 · Cited by 69

Elucidating biogeographical patterns in Australian native canids using genome wide SNPs

Cairns, K. M., Shannon, L. M., Koler‐Matznick, J., Ballard, J. W. O., & Boyko, A. R. (2018) · PLoS ONE · doi:10.1371/journal.pone.0198754 · Cited by 67

De Novo Mutation Rate Estimation in Wolves of Known Pedigree

Koch, E. M., Schweizer, R. M., Schweizer, T. M., Stahler, D. R., Smith, D. W., Wayne, R. K., & Novembre, J. (2019) · Molecular Biology and Evolution · doi:10.1093/molbev/msz159 · Cited by 66

How Much Is That in Dog Years? The Advent of Canine Population Genomics

Larson, G., & Bradley, D. G. (2014) · PLoS Genetics · doi:10.1371/journal.pgen.1004093 · Cited by 70

In search of Paleolithic dogs: a quest with mixed results

Morey, D. F. (2014) · Journal of Archaeological Science · doi:10.1016/j.jas.2014.08.015 · Cited by 63

Paleogenomic Inferences of Dog Domestication

Thalmann, O., & Perri, A. R. (2018) · Population genomics · doi:10.1007/13836_2018_27 · Cited by 64

Adaptive Changes in Hemoglobin Function in High-Altitude Tibetan Canids Were Derived via Gene Conversion and Introgression

Signore, A. V., Yang, Y., Yang, Q., Ga, Q., Moriyama, H., Ge, R., & Storz, J. F. (2019) · Molecular Biology and Evolution · doi:10.1093/molbev/msz097 · Cited by 64

New insights on the history of canids in Oceania based on mitochondrial and nuclear data

Cairns, K. M., & Wilton, A. N. (2016) · Genetica · doi:10.1007/s10709-016-9924-z · Cited by 61

The Social Dog

Marshall-Pescini, S., & Kaminski, J. (2014) · The Social Dog · doi:10.1016/b978-0-12-407818-5.00001-2 · Cited by 55

Whole genome sequence, SNP chips and pedigree structure: building demographic profiles in domestic dog breeds to optimize genetic trait mapping

Dreger, D. L., Rimbault, M., Davis, B. W., Bhatnagar, A., Parker, H. G., & Ostrander, E. A. (2016) · Disease Models & Mechanisms · doi:10.1242/dmm.027037 · Cited by 62

Palaeolithic and prehistoric dogs and Pleistocene wolves from Yakutia: Identification of isolated skulls

Germonpré, M., Fedorov, S., Петрович, Д. П., Galeta, P., Jimenez, E., Sablin, M., & Losey, R. J. (2016) · Journal of Archaeological Science · doi:10.1016/j.jas.2016.11.008 · Cited by 58

The canine era: the rise of a biomedical model

van Steenbeek, F. G., Hytönen, M. K., Leegwater, P. A. J., & Lohi, H. (2016) · Animal Genetics · doi:10.1111/age.12460 · Cited by 62

The companion dog as a unique translational model for aging

Mazzatenta, A., Carluccio, A., Robbe, D., Giulio, C. D., & Cellerino, A. (2017) · Seminars in Cell and Developmental Biology · doi:10.1016/j.semcdb.2017.08.024 · Cited by 59

Decrease of gene expression diversity during domestication of animals and plants

Liu, W., Chen, L., Zhang, S., Hu, F., Wang, Z., Lyu, J., Wang, B., Xiang, H., Zhao, R., Tian, Z., et al. (2019) · BMC Evolutionary Biology · doi:10.1186/s12862-018-1340-9 · Cited by 62

Egg genotyping reveals the possibility of patent Ancylostoma caninum infection in human intestine

Furtado, L. F. V., Dias, L. T. D. O., Rodrigues, T. D. O., da Silva, V. J., de Oliveira, V. N. G. M., & Rabelo, É. M. L. (2020) · Scientific Reports · doi:10.1038/s41598-020-59874-8 · Cited by 58

Dog Breed Differences in Visual Communication with Humans

Konno, A., Romero, T., Inoue‐Murayama, M., Saito, A., & Hasegawa, T. (2016) · PLoS ONE · doi:10.1371/journal.pone.0164760 · Cited by 60

Whole-Genome Sequencing of African Dogs Provides Insights into Adaptations against Tropical Parasites

Yan-hu, L., Wang, L., Xu, T., Guo, X., Li, Y., Yin, T., Yang, H., Hu, Y., Adeola, A. C., Sanke, O. J., et al. (2017) · Molecular Biology and Evolution · doi:10.1093/molbev/msx258 · Cited by 59

Changes in feeding habits promoted the differentiation of the composition and function of gut microbiotas between domestic dogs (Canis lupus familiaris) and gray wolves (Canis lupus)

Lyu, T., Liu, G., Zhang, H., Wang, L., Zhou, S., Dou, H., Pang, B., Sha, W., & Zhang, H. (2018) · AMB Express · doi:10.1186/s13568-018-0652-x · Cited by 56

Psychobiological Factors Affecting Cortisol Variability in Human-Dog Dyads

Schöberl, I., Wedl, M., Beetz, A., & Kotrschal, K. M. (2017) · PLoS ONE · doi:10.1371/journal.pone.0170707 · Cited by 57

Behavioral Genetic Toolkits

Rittschof, C. C., & Robinson, G. E. (2016) · Current topics in developmental biology/Current Topics in Developmental Biology · doi:10.1016/bs.ctdb.2016.04.001 · Cited by 54

The canine gastrointestinal microbiota: early studies and research frontiers

Huang, Z., Pan, Z., Yang, R., Bi, Y., & Xiong, X. (2020) · Gut Microbes · doi:10.1080/19490976.2019.1704142 · Cited by 61

Glutamate receptors in domestication and modern human evolution

O’Rourke, T., & Boeckx, C. (2020) · Neuroscience & Biobehavioral Reviews · doi:10.1016/j.neubiorev.2019.10.004 · Cited by 50

Evolutionary History, Selective Sweeps, and Deleterious Variation in the Dog

Freedman, A. H., Lohmueller, K. E., & Wayne, R. K. (2016) · Annual Review of Ecology, Evolution, and Systematics · doi:10.1146/annurev-ecolsys-121415-032155 · Cited by 50

Neural processes of vocal social perception: Dog-human comparative fMRI studies

Andics, A., & Miklósi, Á. (2017) · Neuroscience & Biobehavioral Reviews · doi:10.1016/j.neubiorev.2017.11.017 · Cited by 53

An Evolutionary Genomic Perspective on the Breeding of Dwarf Chickens

Wang, M., Otecko, N. O., Wang, S., Wu, D., Yang, M., Xu, Y.-L., Murphy, R. W., Peng, M., & Zhang, Y. (2017) · Molecular Biology and Evolution · doi:10.1093/molbev/msx227 · Cited by 46

Multiple Selection Signatures in Farmed Atlantic Salmon Adapted to Different Environments Across Hemispheres

López, M. E., Linderoth, T. P., Norris, A., Lhorente, J. P., Neira, R., & Yañez, J. M. (2019) · Frontiers in Genetics · doi:10.3389/fgene.2019.00901 · Cited by 45

Three-Dimensional Geometric Morphometric Analysis of Fossil Canid Mandibles and Skulls

Drake, A. G., Coquerelle, M., Kosintsev, P. A., Bachura, O. P., Sablin, M., Gusev, A. V., Fleming, L. S., & Losey, R. J. (2017) · Scientific Reports · doi:10.1038/s41598-017-10232-1 · Cited by 43

Canine metabolomics advances

Carlos, G., dos Santos, F. P., & Fröehlich, P. E. (2020) · Metabolomics · doi:10.1007/s11306-020-1638-7 · Cited by 43

Human Evolution beyond Biology and Culture

van den Bergh, J. C. J. M. (2018) · Cambridge University Press eBooks · doi:10.1017/9781108564922 · Cited by 47

Cellular energetics and mitochondrial uncoupling in canine aging

Nicholatos, J. W., Robinette, T. M., Tata, S. V. P., Yordy, J. D., Francisco, A. B., Platov, M., Yeh, T., Ilkayeva, O., Huynh, F. K., Dokukin, M., et al. (2019) · GeroScience · doi:10.1007/s11357-019-00062-6 · Cited by 42

Dietary Variation and Evolution of Gene Copy Number among Dog Breeds

Reiter, T. E., Jagoda, E., & Capellini, T. D. (2016) · PLoS ONE · doi:10.1371/journal.pone.0148899 · Cited by 48

Of dogs and hookworms: man’s best friend and his parasites as a model for translational biomedical research

Shepherd, C., Wangchuk, P., & Loukas, A. C. (2018) · Parasites & Vectors · doi:10.1186/s13071-018-2621-2 · Cited by 42

Linked genetic variants on chromosome 10 control ear morphology and body mass among dog breeds

Webster, M. T., Kamgari, N., Perloski, M., Hoeppner, M. P., Axelsson, E., Hedhammar, Å. A., Pielberg, G., & Lindblad‐Toh, K. (2015) · BMC Genomics · doi:10.1186/s12864-015-1702-2 · Cited by 41

Genome Sequencing Highlights Genes Under Selection and the Dynamic Early History of DogsPreprint

Freedman, A. H., Schweizer, R. M., Gronau, I., Han, E., Vecchyo, D. O., Silva, P., Galaverni, M., Fan, Z., Marx, P., Lorente-Galdós, B., et al. (2013) · arXiv (Cornell University) · doi:10.48550/arxiv.1305.7390 · Cited by 5

The genomic signature of dog domestication reveals adaptation to a starch-rich diet

Axelsson, E., Ratnakumar, A., Arendt, M.-L., Maqbool, K., Webster, M. T., Perloski, M., Liberg, O., Arnemo, J. M., Hedhammar, Å., & Lindblad-Toh, K. (2013) · Nature · doi:10.1038/nature11837 · Cited by 963

Comparative genomic approaches to human evolutionary history

Cagan, A. (2017) · Qucosa (Saxon State and University Library Dresden)

Joint dog and wolf genealogies reveal the evolution of the canine genomePreprint

Rees, J., Sherman, M., Teofilov, D., Colomer-Vilaplana, A., Myers, S., Bergström, A., & Speidel, L. (2026) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.64898/2026.06.18.729863 · Cited by 2

Population Genomics of Domestication and Breed Development in Canines in the Context of Cognitive, Social, Behavioral, and Disease Traits

Irizarry, K. J. L., & Vasconcelos, E. J. R. (2018) · Population genomics · doi:10.1007/13836_2018_43 · Cited by 2