Wnt-mediated activation of NeuroD1 and retro-elements during adult neurogenesis
Open accessAbstract
In adult hippocampus, new neurons are continuously generated from neural stem cells (NSCs), but the molecular mechanisms regulating adult neurogenesis remain elusive. We found that Wnt signaling, together with the removal of Sox2, triggered the expression of NeuroD1 in mice. This transcriptional regulatory mechanism was dependent on a DNA element containing overlapping Sox2 and T-cell factor/lymphoid enhancer factor (TCF/LEF)-binding sites (Sox/LEF) in the promoter. Notably, Sox/LEF sites were also found in long interspersed nuclear element 1 (LINE-1) elements, consistent with their critical roles in the transition of NSCs to proliferating neuronal progenitors. Our results describe a previously unknown Wnt-mediated regulatory mechanism that simultaneously coordinates activation of NeuroD1 and LINE-1, which is important for adult neurogenesis and survival of neuronal progenitors. Moreover, the discovery that LINE-1 retro-elements embedded in the mammalian genome can function as bi-directional promoters suggests that Sox/LEF regulatory sites may represent a general mechanism, at least in part, for relaying environmental signals to other nearby loci to promote adult hippocampal neurogenesis.
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Claims other papers make about this one
Each is checked against this paper’s own text: does it say what the citing paper says it does?
NEUROD1 and CACNA1G are specific target genes of Wnt/β-catenin signaling in the central nervous system.
“NEUROD1 and CACNA1G are specific target genes of Wnt/β-catenin signaling in the central nervous system (CNS) [54, 55].”
From CI-994 is a dual modulator of class I HDACs and Wnt/β-catenin signaling for the treatment of Alzheimer's disease (2026) · cites this paper as [54]
The Abstract and Results section on the Neurod1 promoter show that NeuroD1 transcription in adult neural stem cells depends on canonical Wnt/β-catenin signaling. The passages do not identify CACNA1G as a target gene, so this source supports only the NEUROD1 part of the sentence. (LLM, conf=0.87)
Experimental — accuracy not yet measuredWnt target NEUROD1 is important for adult neurogenesis and the survival and maturation of adult-born neurons.
“Wnt target NEUROD1 is important for adult neurogenesis and the survival and maturation of adult-born neurons [54, 64].”
From CI-994 is a dual modulator of class I HDACs and Wnt/β-catenin signaling for the treatment of Alzheimer's disease (2026) · cites this paper as [54]
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
Cites
Vertebrate neurogenesis is counteracted by Sox1–3 activity
Bylund, M., Andersson, E., Novitch, B. G., & Muhr, J. (2003) · Nature Neuroscience · doi:10.1038/nn1131 · Cited by 825 · see citing works
Jessberger, S., Clark, R. E., Broadbent, N. J., Clemenson, G. D., Consiglio, A., Lie, D. C., Squire, L. R., & Gage, F. H. (2009) · Learning & Memory · doi:10.1101/lm.1172609 · Cited by 654 · see citing works
Self-citation
Flagged first, then by citations
Research works printed but not linked: 40
- [1]Suh H In vivo fate analysis reveals the multipotent and self-renewal capacities of Sox2+ neural stem cells in the adult hippocampus Cell Stem Cell 1 515 528 2007 18371391 PMC2185820
- [2]Song H Stevens CF Gage FH Astroglia induce neurogenesis from adult neural stem cells Nature 417 39 44 2002 11986659
- [3]Barkho BZ Identification of astrocyte-expressed factors that modulate neural stem/progenitor cell differentiation Stem Cells Dev 15 407 421 2006 16846377 PMC2777811
- [4]Lie DC Wnt signaling regulates adult hippocampal neurogenesis Nature 437 1370 1375 2005 16251967
- [5]Galceran J Miyashita-Lin EM Devaney E Rubenstein JL Grosschedl R Hippocampus development and generation of dentate gyrus granule cells is regulated by LEF1 Development 127 469 482 2000 10631168
- [6]Machon O van den Bout CJ Backman M Kemler R Krauss S Role of beta-catenin in the developing cortical and hippocampal neuroepithelium Neuroscience 122 129 143 2003 14596855
- [7]Solberg N Machon O Krauss S Effect of canonical Wnt inhibition in the neurogenic cortex, hippocampus and premigratory dentate gyrus progenitor pool Dev Dyn 237 1799 1811 2008 18521945
- [8]Wexler EM Geschwind DH Palmer TD Lithium regulates adult hippocampal progenitor development through canonical Wnt pathway activation Mol Psychiatry 13 285 292 2008 17968353
- [9]Clevers H Wnt/β-catenin signaling in development and disease Cell 127 469 480 2006 17081971
- [10]Miyata T Maeda T Lee JE NeuroD is required for differentiation of the granule cells in the cerebellum and hippocampus Genes Dev 13 1647 1652 1999 10398678 PMC316850
- [11]Liu M Loss of BETA2/NeuroD leads to malformation of the dentate gyrus and epilepsy Proc Natl Acad Sci USA 97 865 870 2000 10639171 PMC15422
- [12]Tozuka Y Fukuda S Namba T Seki T Hisatsune T GABAergic excitation promotes neuronal differentiation in adult hippocampal progenitor cells Neuron 47 803 815 2005 16157276
- [13]Deisseroth K Excitation-neurogenesis coupling in adult neural stem/progenitor cells Neuron 42 535 552 2004 15157417
- [14]Hsieh J Nakashima K Kuwabara T Mejia E Gage FH Histone deacetylase inhibition–mediated neuronal differentiation of multipotent adult neural progenitor cells Proc Natl Acad Sci USA 101 16659 16664 2004 15537713 PMC527137
- [15]Gao Z Neurod1 is essential for the survival and maturation of adult-born neurons Nat Neurosci 12 1090 1092 2009 19701197 PMC3365543
- [16]Nishimoto M Fukushima A Okuda A Muramatsu M The gene for the embryonic stem cell coactivator UTF1 carries a regulatory element which selectively interacts with a complex composed of Oct-3/4 and Sox-2 Mol Cell Biol 19 5453 5465 1999 10409735 PMC84387
- [17]Ferri AL Sox2 deficiency causes neurodegeneration and impaired neurogenesis in the adult mouse brain Development 131 3805 3819 2004 15240551
- [18]Yuan H Corbi N Basilico C Dailey L Developmental-specific activity of the FGF-4 enhancer requires the synergistic action of Sox2 and Oct-3 Genes Dev 9 2635 2645 1995 7590241
- [19]Collignon J A comparison of the properties of Sox-3 with Sry and two related genes, Sox-1 and Sox-2 Development 122 509 520 1996 8625802
- [20]Ambrosetti DC Basilico C Dailey L Synergistic activation of the fibroblast growth factor 4 enhancer by Sox2 and Oct-3 depends on protein-protein interactions facilitated by a specific spatial arrangement of factor binding sites Mol Cell Biol 17 6321 6329 1997 9343393 PMC232483
- [21]Avilion AA Multipotent cell lineages in early mouse development depend on SOX2 function Genes Dev 17 126 140 2003 12514105 PMC195970
- [23]Graham V Khudyakov J Ellis P Pevny L SOX2 functions to maintain neural progenitor identity Neuron 39 749 765 2003 12948443
- [24]Bani-Yaghoub M Role of Sox2 in the development of the mouse neocortex Dev Biol 295 52 66 2006 16631155
- [25]Muotri AR Somatic mosaicism in neuronal precursor cells mediated by L1 retrotransposition Nature 435 903 910 2005 15959507
- [26]D’Amour KA Gage FH Genetic and functional differences between multipotent neural and pluripotent embryonic stem cells Proc Natl Acad Sci USA 100 11866 11872 2003 12923297 PMC304100
- [27]Gage FH Survival and differentiation of adult neuronal progenitor cells transplanted to the adult brain Proc Natl Acad Sci USA 92 11879 11883 1995 8524867 PMC40506
- [28]Ma Q Kintner C Anderson DJ Identification of neurogenin, a vertebrate neuronal determination gene Cell 87 43 52 1996 8858147
- [29]Farah MH Generation of neurons by transient expression of neural bHLH proteins in mammalian cells Development 127 693 702 2000 10648228
- [30]Guillemot F Vertebrate bHLH genes and the determination of neuronal fates Exp Cell Res 253 357 364 1999 10585258
- [31]Hsieh J Gage FH Chromatin remodeling in neural development and plasticity Curr Opin Cell Biol 17 664 671 2005 16226449
- [32]Brault V Inactivation of the β-catenin gene by Wnt1-Cre–mediated deletion results in dramatic brain malformation and failure of craniofacial development Development 128 1253 1264 2001 11262227
- [33]Yang N Zhang L Zhang Y Kazazian HH Jr An important role for RUNX3 in human LINE-1 transcription and retrotransposition Nucleic Acids Res 31 4929 4940 2003 12907736 PMC169909
- [34]Grove EA Tole S Limon J Yip L Ragsdale CW The hem of the embryonic cerebral cortex is defined by the expression of multiple Wnt genes and is compromised in Gli3-deficient mice Development 125 2315 2325 1998 9584130
- [35]Lee SM Tole S Grove E McMahon AP A local Wnt-3a signal is required for development of the mammalian hippocampus Development 127 457 467 2000 10631167
- [36]Shimogori T VanSant J Paik E Grove EA Members of the Wnt, Fz and Frp gene families expressed in postnatal mouse cerebral cortex J Comp Neurol 473 496 510 2004 15116386
- [37]Gao X Arlotta P Macklis JD Chen J Conditional knock-out of beta-catenin in postnatal-born dentate gyrus granule neurons results in dendritic malformation J Neurosci 27 14317 14325 2007 18160639 PMC6673436
- [39]van Praag H Shubert T Zhao C Gage FH Exercise enhances learning and hippocampal neurogenesis in aged mice J Neurosci 25 8680 8685 2005 16177036 PMC1360197
- [40]Muotri AR Zhao C Marchetto MCN Gage FH Environmental influence on L1 retrotransposons in the adult hippocampus Hippocampus (in press) PMC2758700 19771587
- [41]Miyoshi H Takahashi M Gage FH Verma IM Stable and efficient gene transfer into the retina using an HIV-based lentiviral vector Proc Natl Acad Sci USA 94 10319 10323 1997 9294208 PMC23360
- [42]Pfeifer A Brandon EP Kootstra N Gage FH Verma IM Delivery of the Cre recombinase by a self-deleting lentiviral vector: efficient gene targeting in vivo Proc Natl Acad Sci USA 98 11450 11455 2001 11553794 PMC58750
Cited by
Sorted by citations
Adult Neurogenesis in the Mammalian Brain: Significant Answers and Significant Questions
Ming, G.-L., & Song, H. (2011) · Neuron · doi:10.1016/j.neuron.2011.05.001 · Cited by 2,651 · see citing works
Adult Neurogenesis in the Hippocampus: From Stem Cells to Behavior
Gonçalves, J. T., Schafer, S. T., & Gage, F. H. (2016) · Cell · doi:10.1016/j.cell.2016.10.021 · Cited by 1,122 · see citing works
Self-citationRoles for retrotransposon insertions in human disease
Hancks, D. C., & Kazazian, H. H. (2016) · Mobile DNA · doi:10.1186/s13100-016-0065-9 · Cited by 670 · see citing works
The role of adult hippocampal neurogenesis in brain health and disease
Toda, T., Parylak, S. L., Linker, S. B., & Gage, F. H. (2019) · Molecular Psychiatry · doi:10.1038/s41380-018-0036-2 · Cited by 719 · see citing works
Self-citationLugert, S., Basak, O., Knuckles, P., Haussler, U., Fabel, K., Götz, M., Haas, C. A., Kempermann, G., Taylor, V., & Giachino, C. (2010) · Cell stem cell · doi:10.1016/j.stem.2010.03.017 · Cited by 704 · see citing works
LINE-1 elements in structural variation and disease
Beck, C. R., Garcia-Perez, J. L., Badge, R. M., & Moran, J. V. (2011) · Annual Review of Genomics and Human Genetics · doi:10.1146/annurev-genom-082509-141802 · Cited by 615 · see citing works
Regulation and function of adult neurogenesis: from genes to cognition.
Aimone, J. B., Li, Y., Lee, S. W., Clemenson, G. D., Deng, W., & Gage, F. H. (2014) · Physiological Reviews · doi:10.1152/physrev.00004.2014 · Cited by 635 · see citing works
Self-citationTiwari, S. K., Agarwal, S., Seth, B., Yadav, A., Nair, S., Bhatnagar, P., Karmakar, M., Kumari, M., Chauhan, L. K. S., Patel, D. K., et al. (2014) · ACS Nano · doi:10.1021/nn405077y · Cited by 558 · see citing works
Neurogenesis in the embryonic and adult brain: same regulators, different roles
Urbán, N., & Guillemot, F. (2014) · Frontiers in Cellular Neuroscience · doi:10.3389/fncel.2014.00396 · Cited by 493 · see citing works
Restricting retrotransposons: a review
Goodier, J. L. (2016) · Mobile DNA · doi:10.1186/s13100-016-0070-z · Cited by 436 · see citing works
Epigenetic mechanisms in neurological disease
Jakovcevski, M., & Akbarian, S. (2012) · Nature Medicine · doi:10.1038/nm.2828 · Cited by 450 · see citing works
Wnt signaling in the nervous system and in Alzheimer's disease
Inestrosa, N. C., & Varela-Nallar, L. (2014) · Journal of Molecular Cell Biology · doi:10.1093/jmcb/mjt051 · Cited by 324 · see citing works
Epigenetic Mechanisms of Depression and Antidepressant Action
Vialou, V., Feng, J., Robison, A. J., & Nestler, E. J. (2013) · Annual Review of Pharmacology and Toxicology · doi:10.1146/annurev-pharmtox-010611-134540 · Cited by 277 · see citing works
Tornero, D., Wattananit, S., Grønning Madsen, M., Koch, P., Wood, J., Tatarishvili, J., Mine, Y., Ge, R., Monni, E., Devaraju, K., et al. (2013) · Brain · doi:10.1093/brain/awt278 · Cited by 241 · see citing works
Parvalbumin interneurons mediate neuronal circuitry-neurogenesis coupling in the adult hippocampus
Song, J., Sun, J., Moss, J., Wen, Z., Sun, G. J., Hsu, D., Zhong, C., Davoudi, H., Christian, K. M., Toni, N., et al. (2013) · Nature Neuroscience · doi:10.1038/nn.3572 · Cited by 223 · see citing works
Chow, M. L., Pramparo, T., Winn, M. E., Barnes, C. C., Li, H.-R., Weiss, L., Fan, J.-B., Murray, S., April, C., Belinson, H., et al. (2012) · PLoS Genetics · doi:10.1371/journal.pgen.1002592 · Cited by 202 · see citing works
Adult neurogenesis and neurodegenerative diseases: A systems biology perspective
Horgusluoglu, E., Nudelman, K., Nho, K., & Saykin, A. J. (2017) · American Journal of Medical Genetics Part B: Neuropsychiatric Genetics · doi:10.1002/ajmg.b.32429 · Cited by 174 · see citing works
Iwano, T., Masuda, A., Kiyonari, H., Enomoto, H., & Matsuzaki, F. (2012) · Development · doi:10.1242/dev.080002 · Cited by 155 · see citing works
Regulation of Adult Neurogenesis in Mammalian Brain
Niklison-Chirou, M. V., Agostini, M., Amelio, I., & Melino, G. (2020) · International Journal of Molecular Sciences · doi:10.3390/ijms21144869 · Cited by 143 · see citing works
Zhang, B., Yan, W., Zhu, Y., Yang, W., Le, W., Chen, B., Zhu, R., & Cheng, L. (2018) · Advanced Materials · doi:10.1002/adma.201705694 · Cited by 113 · see citing works
The role of genes domesticated from LTR retrotransposons and retroviruses in mammals
Kaneko-Ishino, T., & Ishino, F. (2012) · Frontiers in Microbiology · doi:10.3389/fmicb.2012.00262 · Cited by 104 · see citing works
Dysregulated Wnt Signalling in the Alzheimer’s Brain
Aghaizu, N. D., Jin, H., & Whiting, P. J. (2020) · Brain Sciences · doi:10.3390/brainsci10120902 · Cited by 70 · see citing works
Wisniewska, M. B., Misztal, K., Michowski, W., Szczot, M., Purta, E., Lesniak, W., Klejman, M. E., Dabrowski, M., Filipkowski, R. K., Nagalski, A., et al. (2010) · The Journal of Neuroscience · doi:10.1523/jneurosci.1425-09.2010 · Cited by 64 · see citing works
Rhee, S., Kirschen, G. W., Gu, Y., & Ge, S. (2016) · Scientific Reports · doi:10.1038/srep34370 · Cited by 39 · see citing works
Yoneda, Y., Kuramoto, N., & Kawada, K. (2019) · Neurochemistry International · doi:10.1016/j.neuint.2019.104505 · Cited by 39 · see citing works
Ogura, M., Kakuda, T., Takarada, T., Nakamichi, N., Fukumori, R., Kim, Y.-H., Hinoi, E., & Yoneda, Y. (2012) · PLoS ONE · doi:10.1371/journal.pone.0048270 · Cited by 28 · see citing works
An L-Glutamine transporter isoform for neurogenesis facilitated by L-Theanine
Yoneda, Y. (2017) · Neurochemical Research · doi:10.1007/s11064-017-2317-6 · Cited by 23 · see citing works
Lu, W., Kawatani, K., Ren, Y., Nambara, T., Jia, L., Jeevaratnam, S., Lee, E., Martinez, P. R., Izhar, T., Wang, N., et al. (2026) · Alzheimer's Research & Therapy · doi:10.1186/s13195-026-01982-0 · Cited by 4 · see citing works
- Authors
- Kuwabara, T., Hsieh, J., Muotri, A., Yeo, G., Warashina, M., Lie, D. C., Moore, L., Nakashima, K., Asashima, M., & Gage, F. H.
- Affiliations
- National Institute of Advanced Industrial Science and Technology (JP)
- The University of Texas Southwestern Medical Center (US)
- University of California San Diego (US)
- Helmholtz Munich (DE)
- Salk Institute for Biological Studies (US)
- Nara Institute of Science and Technology (JP)
- Corresponding author
- Kuwabara, Tomoko
- ORCID
- Venue
- Nature Neuroscience
- Published
- 2009-08-23
- Volume
- 12
- Issue
- 9
- Pages
- 1097-1105
- ISSN
- 1097-6256 (ISSN-L)
- 1546-1726
- PMC
- PMC2764260
- OpenAlex
- W2041534255
- Cited by
- 648
- References
- 2
- Citations by year
- 2026: 11 · 2025: 34 · 2024: 21 · 2023: 27 · 2022: 33 · 2021: 46 · 2020: 45 · 2019: 30 · 2018: 43 · 2017: 46 · 2016: 31 · 2015: 38 · 2014: 43 · 2013: 58 · 2012: 56
- FWCI
- 14.85
- Type
- journal article
- Language
- en
- Open access
- green
- www.ncbi.nlm.nih.gov
- Licence
- www.springer.com/tdm (tdm)
- Locations
- Nature Neuroscience (publishedVersion)
- PubMed (publishedVersion)
- PubMed Central (acceptedVersion)
- Institutional Repositories DataBase (IRDB) (submittedVersion)
- Site cant be reached (submittedVersion)
- Funders
- National Institute of Advanced Industrial Science and Technology
- National Science Council
- National Institutes of Health
- National Institute of Mental Health (MH082070, R56MH082070)
- Topics
- Life Sciences › Neuroscience › Developmental Neuroscience › Neurogenesis and neuroplasticity mechanisms
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Wnt/β-catenin signaling in development and cancer
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Developmental Biology and Gene Regulation
- Keywords
- adult neurogenesis, Wnt/β-catenin signaling, NeuroD1, β-catenin, TCF/LEF, SOX2, LINE-1 retrotransposons, long interspersed nuclear elements, neural stem cells, neuronal precursors, hippocampus, transcriptional regulation, bidirectional promoter, neuronal differentiation
- MeSH terms
- Animals, Cell Survival, Cells, Cultured, Female, Hippocampus, Mice, Transgenic, Neurons, Rats, Sprague-Dawley, Mice, Knockout, Long Interspersed Nucleotide Elements, Wnt Proteins, beta Catenin, Mice, Rats, Basic Helix-Loop-Helix Proteins, Basic Helix-Loop-Helix Transcription Factors, TCF Transcription Factors, Adult Stem Cells, Neurogenesis, SOXB1 Transcription Factors, Wnt3 Protein
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review