The DOI matches its Crossref record; 3 of the 3 references it cites were found in a registry or an index.
RIP-Chip: the isolation and identification of mRNAs, microRNAs and protein components of ribonucleoprotein complexes from cell extracts
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Citations
Cites
CLIP Identifies Nova-Regulated RNA Networks in the Brain
Ule, J., Jensen, K. B., Ruggiu, M., Mele, A., Ule, A., & Darnell, R. B. (2003) · Science · doi:10.1126/science.1090095 · Cited by 1,120
Brown, V., Jin, P., Ceman, S., Darnell, J. C., O'Donnell, W. T., Tenenbaum, S. A., Jin, X., Feng, Y., Wilkinson, K. D., Keene, J. D., et al. (2001) · Cell · doi:10.1016/s0092-8674(01)00568-2 · Cited by 1,109
Self-citationIdentification of a target RNA motif for RNA-binding protein HuR
de Silanes, I. L., Zhan, M., Lal, A., Yang, X., & Gorospe, M. (2004) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0306453101 · Cited by 502 · cited 1×
“This type of analysis has been done effectively with Hu protein”
Method
Cited by
Transcriptome-wide Analysis of Regulatory Interactions of the RNA-Binding Protein HuR
Lebedeva, S., Jens, M., Theil, K., Schwanhäusser, B., Selbach, M., Landthaler, M., & Rajewsky, N. (2011) · Molecular Cell · doi:10.1016/j.molcel.2011.06.008 · Cited by 716
Mukherjee, N., Corcoran, D. L., Nusbaum, J. D., Reid, D. W., Georgiev, S., Hafner, M., Ascano, M., Tuschl, T., Ohler, U., & Keene, J. D. (2011) · Molecular Cell · doi:10.1016/j.molcel.2011.06.007 · Cited by 654
Self-citationDefining the regulatory network of the tissue-specific splicing factors Fox-1 and Fox-2
Zhang, C., Zhang, Z., Castle, J., Sun, S., Johnson, J., Krainer, A. R., & Zhang, M. Q. (2008) · Genes & Development · doi:10.1101/gad.1703108 · Cited by 300
Tet2 promotes pathogen infection-induced myelopoiesis through mRNA oxidation
Shen, Q., Zhang, Q., Shi, Y., Shi, Q., Jiang, Y., Gu, Y., Li, Z., Li, X., Zhao, K., Wang, C., et al. (2018) · Nature · doi:10.1038/nature25434 · Cited by 243
Rossato, M., Curtale, G., Tamassia, N., Castellucci, M., Mori, L., Gasperini, S., Mariotti, B., De Luca, M., Mirolo, M., Cassatella, M. A., et al. (2012) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1209100109 · Cited by 215
Integrating physical and genetic maps: from genomes to interaction networks
Beyer, A., Bandyopadhyay, S., & Ideker, T. (2007) · Nature Reviews Genetics · doi:10.1038/nrg2144 · Cited by 207
Systematic discovery of structural elements governing stability of mammalian messenger RNAs
Goodarzi, H., Najafabadi, H. S., Oikonomou, P., Greco, T. M., Fish, L., Salavati, R., Cristea, I. M., & Tavazoie, S. (2012) · Nature · doi:10.1038/nature11013 · Cited by 187
Identification of MicroRNA-124-3p as a Putative Epigenetic Signature of Major Depressive Disorder
Roy, B., Dunbar, M., Shelton, R. C., & Dwivedi, Y. (2017) · Neuropsychopharmacology · doi:10.1038/npp.2016.175 · Cited by 199
Morris, A. R., Mukherjee, N., & Keene, J. D. (2008) · Molecular and Cellular Biology · doi:10.1128/mcb.00155-08 · Cited by 155
Self-citationOne, Two, Three, Four! How Multiple RRMs Read the Genome Sequence
Afroz, T., Cienikova, Z., Cléry, A., & Allain, F. H. T. (2015) · Methods in Enzymology · doi:10.1016/bs.mie.2015.01.015 · Cited by 104
The ribonome: a dominant force in co‐ordinating gene expression
Mansfield, K. D., & Keene, J. D. (2009) · Biology of the Cell · doi:10.1042/bc20080055 · Cited by 102
Self-citationDiscovery of new microRNAs by small RNAome deep sequencing in childhood acute lymphoblastic leukemia
Schotte, D., Moqadam, F. A., Lange-Turenhout, E. A. M., Chen, C., van IJcken, W. F. J., Pieters, R., & den Boer, M. L. (2011) · Leukemia · doi:10.1038/leu.2011.105 · Cited by 89
Neutralization of terminal differentiation in gliomagenesis
Hu, J., Ho, A. L., Yuan, L., Hu, B., Hua, S., Hwang, S. S., Zhang, J., Hu, T., Zheng, H., Gan, B., et al. (2013) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1308610110 · Cited by 76
Calarco, J. A., Zhen, M., & Blencowe, B. J. (2011) · RNA · doi:10.1261/rna.2603911 · Cited by 72
Functional Interactions Between microRNAs and RNA Binding Proteins
Jiang, P., & Coller, H. (2012) · MicroRNA e · doi:10.2174/2211536611201010070 · Cited by 62
Xu, J., Chen, Q., Zen, K., Zhang, C., & Zhang, Q. (2013) · Journal of Neurochemistry · doi:10.1111/jnc.12057 · Cited by 61
Franchini, D.-M., Lanvin, O., Tosolini, M., Patras de Campaigno, E., Cammas, A., Péricart, S., Scarlata, C.-M., Lebras, M., Rossi, C., Ligat, L., et al. (2019) · Cell Reports · doi:10.1016/j.celrep.2018.12.014 · Cited by 61
Specific sequence determinants of miR-15/107 microRNA gene group targets
Nelson, P. T., Wang, W.-X., Mao, G., Wilfred, B. R., Xie, K., Jennings, M. H., Gao, Z., & Wang, X. (2011) · Nucleic Acids Research · doi:10.1093/nar/gkr532 · Cited by 53
Extendable and explainable deep learning for pan-cancer radiogenomics research
Liu, Q., & Hu, P. (2022) · Current Opinion in Chemical Biology · doi:10.1016/j.cbpa.2021.102111 · Cited by 27
Stimulation of polo-like kinase 3 mRNA decay by tristetraprolin
Horner, T. J., Lai, W. S., Stumpo, D. J., & Blackshear, P. J. (2009) · Molecular and Cellular Biology · doi:10.1128/mcb.00982-08 · Cited by 26
Fan, X., Tao, S., Li, Q., Deng, B., Tan, Q.-Y., & Jin, H. (2022) · Molecular Therapy - Oncolytics · doi:10.1016/j.omto.2021.12.014 · Cited by 26
Wells, M. L., Huang, W., Li, L., Gerrish, K. E., Fargo, D. C., Ozsolak, F., & Blackshear, P. J. (2012) · Molecular and Cellular Biology · doi:10.1128/mcb.00325-12 · Cited by 24
Metadata
- Authors
- Keene, J. D., Komisarow, J. M., & Friedersdorf, M. B.
- Venue
- Nature Protocols
- Published
- 2006-06
- Volume
- 1
- Issue
- 1
- Pages
- 302-307
- ISSN
- 1750-2799 (ISSN-L)
- 1754-2189
- OpenAlex
- W2048085228
- Cited by
- 616
- References
- 3
- FWCI
- 5.28
- Type
- journal article
- Language
- en
- Open access
- closed
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Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
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Bibliographic data: Semantic Scholar, OpenAlex, Crossref.
Contains information from the Semantic Scholar Academic Graph Datasets, made available under the ODC Attribution License (ODC-BY 1.0).
Semantic Scholar’s data is described in: Kinney, R., et al. (2023). The Semantic Scholar Open Data Platform. arXiv:2301.10140.
