Tobacco rattle virus–based virus-induced gene silencing in Nicotiana benthamiana

A new mathematical model for relative quantification in real-time RT-PCR

Pfaffl, M. W. (2001) · Nucleic Acids Research · doi:10.1093/nar/29.9.e45 · Cited by 34,610

Genome-Wide Insertional Mutagenesis of Arabidopsis thaliana

Alonso, J. M., Stepanova, A. N., Leisse, T. J., Kim, C. J., Chen, H., Shinn, P., Stevenson, D. K., Zimmerman, J., Barajas, P., Cheuk, R., et al. (2003) · Science · doi:10.1126/science.1086391 · Cited by 5,102

Targeted genome modification of crop plants using a CRISPR-Cas system

Shan, Q., Wang, Y., Li, J., Zhang, Y., Chen, K., Liang, Z., Zhang, K., Liu, J., Xi, J. J., Qiu, J.-L., et al. (2013) · Nature Biotechnology · doi:10.1038/nbt.2650 · Cited by 1,810

Virus‐induced gene silencing in tomato

Liu, Y., Schiff, M., & Dinesh‐Kumar, S. P. (2002) · The Plant Journal · doi:10.1046/j.1365-313x.2002.01394.x · Cited by 1,654

Construct design for efficient, effective and high‐throughput gene silencing in plants

Wesley, S. V., Helliwell, C. A., Smith, N. A., Wang, M., Rouse, D. T., Liu, Q., Gooding, P. S., Singh, S. P., Abbott, D., Stoutjesdijk, P. A., et al. (2001) · The Plant Journal · doi:10.1046/j.1365-313x.2001.01105.x · Cited by 1,532

Highly Specific Gene Silencing by Artificial MicroRNAs in Arabidopsis

Schwab, R., Ossowski, S., Riester, M., Warthmann, N., & Weigel, D. (2006) · The Plant Cell · doi:10.1105/tpc.105.039834 · Cited by 1,346

Targeted mutagenesis in the model plant Nicotiana benthamiana using Cas9 RNA-guided endonuclease

Nekrasov, V., Staskawicz, B., Weigel, D., Jones, J. D. G., & Kamoun, S. (2013) · Nature Biotechnology · doi:10.1038/nbt.2655 · Cited by 1,127

Tobacco Rar1, EDS1 and NPR1/NIM1 like genes are required for N‐mediated resistance to tobacco mosaic virus

Liu, Y., Schiff, M., Marathe, R., & Dinesh‐Kumar, S. P. (2002) · The Plant Journal · doi:10.1046/j.1365-313x.2002.01297.x · Cited by 1,042

Initiation and Maintenance of Virus-Induced Gene Silencing

Ruiz, M. T., Voinnet, O., & Baulcombe, D. C. (1998) · The Plant Cell · doi:10.1105/tpc.10.6.937 · Cited by 998

Gene silencing as an adaptive defence against viruses

Waterhouse, P. M., Wang, M.-B., & Lough, T. (2001) · Nature · doi:10.1038/35081168 · Cited by 980

Technical Advance: Tobacco rattle virus as a vector for analysis of gene function by silencing

Ratcliff, F., Martin‐Hernandez, A. M., & Baulcombe, D. C. (2001) · The Plant Journal · doi:10.1046/j.0960-7412.2000.00942.x · Cited by 960

Applications and advantages of virus‐induced gene silencing for gene function studies in plants

Burch‐Smith, T. M., Anderson, J. C., Martin, G. B., & Dinesh‐Kumar, S. P. (2004) · The Plant Journal · doi:10.1111/j.1365-313x.2004.02158.x · Cited by 790

Cytoplasmic inhibition of carotenoid biosynthesis with virus-derived RNA.

Kumagai, M. H., Donson, J., della-Cioppa, G., Harvey, D., Hanley, K., & Grill, L. K. (1995) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.92.5.1679 · Cited by 716

Eleven Golden Rules of Quantitative RT-PCR

Udvardi, M. K., Czechowski, T., & Scheible, W.-R. (2008) · The Plant Cell · doi:10.1105/tpc.108.061143 · Cited by 707

Fast forward genetics based on virus-induced gene silencing

Baulcombe, D. C. (1999) · Current Opinion in Plant Biology · doi:10.1016/s1369-5266(99)80022-3 · Cited by 633

High throughput virus-induced gene silencing implicates heat shock protein 90 in plant disease resistance

Lu, R. (2003) · The EMBO Journal · doi:10.1093/emboj/cdg546 · Cited by 550

Virus-induced gene silencing in plants

Lu, R. (2003) · Methods · doi:10.1016/s1046-2023(03)00037-9 · Cited by 530

Transcription Activator-Like Effector Nucleases Enable Efficient Plant Genome Engineering

Zhang, Y., Zhang, F., Li, X., Baller, J. A., Qi, Y., Starker, C. G., Bogdanove, A. J., & Voytas, D. F. (2012) · Plant Physiology · doi:10.1104/pp.112.205179 · Cited by 486

A Draft Genome Sequence of Nicotiana benthamiana to Enhance Molecular Plant-Microbe Biology Research

Bombarely, A., Rosli, H. G., Vrebalov, J., Moffett, P., Mueller, L. A., & Martin, G. B. (2012) · Molecular Plant-Microbe Interactions® · doi:10.1094/mpmi-06-12-0148-ta · Cited by 472

Targeted mutagenesis using zinc-finger nucleases in Arabidopsis

Lloyd, A., Plaisier, C. L., Carroll, D., & Drews, G. N. (2005) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0409339102 · Cited by 417

Disruption of phytoene desaturase gene results in albino and dwarf phenotypes in Arabidopsis by impairing chlorophyll, carotenoid, and gibberellin biosynthesis

Qin, G., Gu, H., Ma, L., Peng, Y., Deng, X. W., Chen, Z., & Qu, L.-J. (2007) · Cell Research · doi:10.1038/cr.2007.40 · Cited by 411

Virus‐induced gene silencing in tomato fruit

Fu, D., Zhu, B., Zhu, H., Jiang, W., & Luo, Y. (2005) · The Plant Journal · doi:10.1111/j.1365-313x.2005.02441.x · Cited by 363

MAPKKKα is a positive regulator of cell death associated with both plant immunity and disease

del Pozo, O., Pedley, K. F., & Martin, G. B. (2004) · The EMBO Journal · doi:10.1038/sj.emboj.7600283 · Cited by 320

New dimensions for VIGS in plant functional genomics

Senthil-Kumar, M., & Mysore, K. S. (2011) · Trends in Plant Science · doi:10.1016/j.tplants.2011.08.006 · Cited by 314

Versatile Gene-Specific Sequence Tags for Arabidopsis Functional Genomics: Transcript Profiling and Reverse Genetics Applications

Hilson, P., Allemeersch, J., Altmann, T., Aubourg, S., Avon, A., Beynon, J., Bhalerao, R. P., Bitton, F., Caboche, M., Cannoot, B., et al. (2004) · Genome Research · doi:10.1101/gr.2544504 · Cited by 307

Discovery of Rare Mutations in Populations: TILLING by Sequencing

Tsai, H., Howell, T., Nitcher, R., Missirian, V., Watson, B., Ngo, K. J., Lieberman, M., Fass, J., Uauy, C., Tran, R. K., et al. (2011) · Plant Physiology · doi:10.1104/pp.110.169748 · Cited by 265

Glycolate Oxidase Modulates Reactive Oxygen Species–Mediated Signal Transduction during Nonhost Resistance in Nicotiana benthamiana and Arabidopsis

Rojas, C. M., Senthil-Kumar, M., Wang, K., Ryu, C.-M., Kaundal, A., & Mysore, K. S. (2012) · The Plant Cell · doi:10.1105/tpc.111.093245 · Cited by 256

Advances in Omics and Bioinformatics Tools for Systems Analyses of Plant Functions

Mochida, K., & Shinozaki, K. (2011) · Plant and Cell Physiology · doi:10.1093/pcp/pcr153 · Cited by 232

Computational Estimation and Experimental Verification of Off-Target Silencing during Posttranscriptional Gene Silencing in Plants

Xu, P., Zhang, Y., Kang, L., Roossinck, M. J., & Mysore, K. S. (2006) · Plant Physiology · doi:10.1104/pp.106.083295 · Cited by 216

Advances in plant genome sequencing

Hamilton, J. P., & Robin Buell, C. (2012) · The Plant Journal · doi:10.1111/j.1365-313x.2012.04894.x · Cited by 198

Phytosterols Play a Key Role in Plant Innate Immunity against Bacterial Pathogens by Regulating Nutrient Efflux into the Apoplast

Wang, K., Senthil-Kumar, M., Ryu, C.-M., Kang, L., & Mysore, K. S. (2012) · Plant Physiology · doi:10.1104/pp.111.189217 · Cited by 185

Molecular biology of the tobraviruses

MacFarlane, S. A. (1999) · Journal of General Virology · doi:10.1099/0022-1317-80-11-2799 · Cited by 138

Optimized cDNA libraries for virus-induced gene silencing (VIGS) using tobacco rattle virus

Liu, E.-W., & Page, J. E. (2008) · Plant Methods · doi:10.1186/1746-4811-4-5 · Cited by 120

Compromised Virus-Induced Gene Silencing in RDR6-Deficient Plants

Vaistij, F. E., & Jones, L. (2009) · PLANT PHYSIOLOGY · doi:10.1104/pp.108.132688 · Cited by 111

MIGS: miRNA‐induced gene silencing

de Felippes, F. F., Wang, J., & Weigel, D. (2011) · The Plant Journal · doi:10.1111/j.1365-313x.2011.04896.x · Cited by 101

Agroinoculation and Agroinfiltration: Simple Tools for Complex Gene Function Analyses

Vaghchhipawala, Z. E., Rojas, C. M., Senthil‐Kumar, M., & Mysore, K. S. (2010) · Methods in molecular biology · doi:10.1007/978-1-60761-682-5_6 · Cited by 86

Optimized virus‐induced gene silencing in Solanum nigrum reveals the defensive function of leucine aminopeptidase against herbivores and the shortcomings of empty vector controls

Hartl, M., Merker, H., Schmidt, D. D., & Baldwin, I. T. (2008) · New Phytologist · doi:10.1111/j.1469-8137.2008.02479.x · Cited by 61

The reliability of virus‐induced gene silencing experiments using tobacco rattle virus in tomato is influenced by the size of the vector control

Wu, C., Jia, L., & Goggin, F. L. (2010) · Molecular Plant Pathology · doi:10.1111/j.1364-3703.2010.00669.x · Cited by 57

Virus-induced gene silencing and its application in characterizing genes involved in water-deficit-stress tolerance

Senthil‐Kumar, M., Gowda, H. V. R., Hema, R., Mysore, K. S., & Udayakumar, M. (2008) · Journal of Plant Physiology · doi:10.1016/j.jplph.2008.04.007 · Cited by 44

A high-throughput virus-induced gene silencing protocol identifies genes involved in multi-stress tolerance

Ramegowda, V., Senthil‐Kumar, M., Udayakumar, M., & Mysore, K. S. (2013) · BMC Plant Biology · doi:10.1186/1471-2229-13-193 · Cited by 41

Characterization of the LOV1 -Mediated, Victorin-Induced, Cell-Death Response with Virus-Induced Gene Silencing

Gilbert, B., & Wolpert, T. (2013) · Molecular Plant-Microbe Interactions · doi:10.1094/mpmi-01-13-0014-r · Cited by 38

De Novo Foliar Transcriptome of Chenopodium amaranticolor and Analysis of Its Gene Expression During Virus-Induced Hypersensitive Response

Zhang, Y., Pei, X., Zhang, C., Lu, Z., Wang, Z., Jia, S., & Li, W. (2012) · PLoS ONE · doi:10.1371/journal.pone.0045953 · Cited by 20

Plant cholesterol biosynthetic pathway overlaps with phytosterol metabolism

Sonawane, P. D., Pollier, J., Panda, S., Szymanski, J., Massalha, H., Yona, M., Unger, T., Malitsky, S., Arendt, P., Pauwels, L., et al. (2016) · Nature Plants · doi:10.1038/nplants.2016.205 · Cited by 336

Tools and targets: the dual role of plant viruses in CRISPR–Cas genome editing

Uranga, M., & Daròs, J. (2023) · The Plant Genome · doi:10.1002/tpg2.20220 · Cited by 68