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Disorders of nucleotide excision repair: the genetic and molecular basis of heterogeneity
Abstract
Mutations in genes on the nucleotide excision repair pathway are associated with diseases, such as xeroderma pigmentosum, Cockayne syndrome and trichothiodystrophy, that involve skin cancer and developmental and neurological symptoms. These mutations cause the defective repair of damaged DNA and increased transcription arrest but, except for skin cancer, the links between repair and disease have not been obvious. Widely different clinical syndromes seem to result from mutations in the same gene, even when the mutations result in complete loss of function. The mapping of mutations in recently solved protein structures has begun to clarify the links between the molecular defects and phenotypes, but the identification of additional sources of clinical variability is still necessary.
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“Both XP and CS patients have defects in NER.”
From Why Cockayne syndrome patients do not get cancer despite their DNA repair deficiency (2016) · cites this paper as [1]
In the citing paper
“CS patients are characterized by neurological and developmental symptoms such as early cessation of growth, microcephaly, mental retardation with dysmyelination, cachexia, and a greatly reduced life expectancy (1).”
From Why Cockayne syndrome patients do not get cancer despite their DNA repair deficiency (2016) · cites this paper as [1]
In the citing paper
“CS patients, defective in the TCR branch of NER (1, 27), present a very different clinical picture, one of developmental defects and neurodegeneration; many but not all patients are also photosensitive, some developing blistering sunburns (5, 28).”
From Why Cockayne syndrome patients do not get cancer despite their DNA repair deficiency (2016) · cites this paper as [1]
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Fousteri, M., Vermeulen, W., van Zeeland, A. A., & Mullenders, L. H. F. (2006) · Molecular Cell · doi:10.1016/j.molcel.2006.06.029 · Cited by 387
RetractedMoser, J., Kool, H., Giakzidis, I., Caldecott, K., Mullenders, L. H. F., & Fousteri, M. I. (2007) · Molecular Cell · doi:10.1016/j.molcel.2007.06.014 · Cited by 261
RetractedGenome maintenance mechanisms for preventing cancer
Hoeijmakers, J. H. J. (2001) · Nature · doi:10.1038/35077232 · Cited by 3,939
Defective repair replication of DNA in xeroderma pigmentosum
CLEAVER, J. E. (1968) · Nature · doi:10.1038/218652a0 · Cited by 1,729
Self-citationMechanism of open complex and dual incision formation by human nucleotide excision repair factors
Evans, E., Moggs, J. G., Hwang, J. R., Egly, J., & Wood, R. D. (1997) · The EMBO Journal · doi:10.1093/emboj/16.21.6559 · Cited by 500
Cancer in xeroderma pigmentosum and related disorders of DNA repair
Cleaver, J. E. (2005) · Nature Reviews Cancer · doi:10.1038/nrc1652 · Cited by 427
Self-citationFan, L., Fuss, J. O., Cheng, Q. J., Arvai, A. S., Hammel, M., Roberts, V. A., Cooper, P. K., & Tainer, J. A. (2008) · Cell · doi:10.1016/j.cell.2008.04.030 · Cited by 369
Selby, C. P., & Sancar, A. (1997) · Journal of Biological Chemistry · doi:10.1074/jbc.272.3.1885 · Cited by 267
The Y-family DNA polymerase κ (pol κ) functions in mammalian nucleotide-excision repair
Ogi, T., & Lehmann, A. R. (2006) · Nature Cell Biology · doi:10.1038/ncb1417 · Cited by 211
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- Laposa, R. R., Feeney, L., Crowley, E., de Feraudy, S. & Cleaver, J. E. p53 suppression overwhelms DNA polymerase h deficiency in determining the cellular UV DNA damage response. DNA Repair 6, 1794–1804 (2007). · DOI
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- Coin, F., Oksenych, V. & Egly, J.-M. Distinct roles for the XPB/p52 and XPD/p44 subcomplexes of TFIIH in damaged DNA opening during nucleotide excision repair. Mol. Cell 26, 245–256 (2007). · DOI
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Items 101–200 of 376
Nucleotide excision repair activity on DNA damage induced by photoactivated methylene blue
Berra, C. M., de Oliveira, C. S., Garcia, C. C. M., Rocha, C. R. R., Lerner, L. K., Lima, L. C. D. A., Baptista, M. D. S., & Menck, C. F. M. (2013) · Free Radical Biology and Medicine · doi:10.1016/j.freeradbiomed.2013.03.026 · Cited by 40
The crosstalk between DNA-damage responses and innate immunity
He, M., Jiang, H., Li, S., Xue, M., Wang, H., Zheng, C., & Tong, J. (2024) · International Immunopharmacology · doi:10.1016/j.intimp.2024.112768 · Cited by 41
DNA damage response signaling: A common link between cancer and cardiovascular diseases
Nikfarjam, S., & Singh, K. K. (2022) · Cancer Medicine · doi:10.1002/cam4.5274 · Cited by 45
The Role of Dynamic m6A RNA Methylation in Photobiology
Robinson, M., Shah, P., Cui, Y., & He, Y. (2018) · Photochemistry and Photobiology · doi:10.1111/php.12930 · Cited by 42
The Cartography of UV ‐induced DNA Damage Formation and DNA Repair
Hu, J., & Adar, S. (2016) · Photochemistry and Photobiology · doi:10.1111/php.12668 · Cited by 41
Association between XPF Polymorphisms and Cancer Risk: A Meta-Analysis
Shi, T., He, J., Qiu, L., Zhu, M., Wang, M., Zhou, X.-Y., Han, J., Yu, H., Zang, R., & Wei, Q. (2012) · PLoS ONE · doi:10.1371/journal.pone.0038606 · Cited by 37
“Because germ-line mutations in XP genes cause some rare inherited human syndromes, such as XP, cockayne syndrome (CS) and trichothiodystrophy (TTD) following a recessive genetic model [65–67], in which mutant homozygotes manifest the disease Figure 3.”
BackgroundEpigenetic based synthetic lethal strategies in human cancers
Gao, A., & Guo, M. (2020) · Biomarker Research · doi:10.1186/s40364-020-00224-1 · Cited by 40
Recent Advancements in DNA Damage–Transcription Crosstalk and High-Resolution Mapping of DNA Breaks
Vitelli, V., Galbiati, A., Iannelli, F., Pessina, F., Sharma, S., & di Fagagna, F. D. (2017) · Annual Review of Genomics and Human Genetics · doi:10.1146/annurev-genom-091416-035314 · Cited by 41
Stanfill, S. B., Hecht, S. S., Joerger, A. C., González, P. J., Maia, L. B., Rivas, M. G., Moura, J. J. G., Gupta, A., Brun, N. E. L., Crack, J. C., et al. (2023) · Critical Reviews in Toxicology · doi:10.1080/10408444.2023.2264327 · Cited by 45
“Adducts can also cause mutations in genes encoding repair enzymes, such as MGMT (Rohatgi et al. 2005; Sawhney et al. 2007; Lamb et al. 2014), ALKBH2 (Wang et al. 2022), or BER and NER related pathway enzymes (Cleaver et al. 2009) so they do not operate correctly.”
BackgroundDNA damage and gene therapy of xeroderma pigmentosum, a human DNA repair-deficient disease.
Dupuy, A., & Sarasin, A. (2015) · Mutation research · doi:10.1016/j.mrfmmm.2014.08.007 · Cited by 37
“(A) Crystal violet coloration 10 days after UV-C ted with matrix repair only (4), parental XP4PA-SV cell line (negative control) and eated with 5aza-dC at 0.”
A Novel Role of Krüppel-like Factor 8 in DNA Repair in Breast Cancer Cells
Lu, H., Liu, H., Li, T., Lahiri, S. K., Shen, C., Wason, M. S., Mukherjee, D., Xie, H., Lin, Y., & Zhao, J. (2012) · Journal of Biological Chemistry · doi:10.1074/jbc.m112.418053 · Cited by 38
“SSBs and DSBs are primarily repaired by PARP-1 and BRCAs or DNA-PK, respectively (2, 4, 5).”
BackgroundEndogenous formation and repair of oxidatively induced G[8-5 m]T intrastrand cross-link lesion
Wang, J., Cao, H., You, C., Yuan, B., Bahde, R., Gupta, S. K., Nishigori, C., Niedernhofer, L. J., Brooks, P. J., & Wang, Y. (2012) · Nucleic Acids Research · doi:10.1093/nar/gks357 · Cited by 38
“XP neurologic disease is observed in approximately 20% of XP patients (49).”
BackgroundXPC silencing sensitizes glioma cells to arsenic trioxide via increased oxidative damage.
Liu, S.-Y., Wen, C.-Y., Lee, Y.-J., & Lee, T.-C. (2010) · Toxicological Sciences · doi:10.1093/toxsci/kfq113 · Cited by 36
“, loss of enzymatic activity) (Cleaver et al., 2009).”
BackgroundThe Nucleotide Excision Repair Pathway Limits L1 Retrotransposition
Servant, G., Streva, V. A., Derbes, R. S., Wijetunge, M. I., Neeland, M., White, T., Belancio, V. P., Roy‐Engel, A. M., & Deininger, P. L. (2016) · Genetics · doi:10.1534/genetics.116.188680 · Cited by 42
“Complementation studies have revealed nine factors (XPA through XPG, CSA, and CSB) involved in NER activity (for review, see Cleaver et al. 2009; Nouspikel 2009).”
BackgroundModeling xeroderma pigmentosum associated neurological pathologies with patients-derived iPSCs
Fu, L., Xu, X., Ren, R., Wu, J., Zhang, W., Yang, J., Ren, X., Wang, S., Zhao, Y., Sun, L., et al. (2016) · Protein & Cell · doi:10.1007/s13238-016-0244-y · Cited by 35
“NER is involved in the erasure of ultraviolet (UV)induced DNA lesions or chemical-caused DNA bulky adducts (Cleaver et al., 2009).”
Loss ofCaenorhabditis elegansBRCA1 Promotes Genome Stability During Replication insmc-5Mutants
Wolters, S., Ermolaeva, M., Bickel, J. S., Fingerhut, J. M., Khanikar, J., Chan, R. C., & Schumacher, B. (2014) · Genetics · doi:10.1534/genetics.113.158295 · Cited by 33
“Mutations that inactivate GG-NER lead to highly elevated skin cancer susceptibility in xeroderma pigmentosum (XP) patients (Cleaver et al. 2009).”
BackgroundDNA damage response in breast cancer and its significant role in guiding novel precise therapies
Li, J., Jia, Z., Lin, D., Cao, H., Huang, Y., Xu, H., Xie, Z., Jiang, Y., Wang, X., & Liu, J. (2024) · Biomarker Research · doi:10.1186/s40364-024-00653-2 · Cited by 37
“NER is another important mechanism that can predominantly repair bulky adducts or intrastrand crosslinks mainly caused by UV-induced lesions or chemical alterations like cisplatin [3, 52].”
BackgroundMorreall, J., Petrova, L., & Doetsch, P. (2013) · Journal of Cellular Physiology · doi:10.1002/jcp.24400 · Cited by 34
“…crystallographic studies of Saccharomyces cerevisiae RNAP in complex with two other NER substrate lesions, cyclobutane pyrimidine dimers (CPDs) (Brueckner et al., 2007; Walmacq et al., 2012) and cisplatin lesions (Damsma et al., 2007), as well as the BER substrate 8-oxoG (Damsma and Cramer, 2009).”
BackgroundForrester, H. B., Li, J., Hovan, D., Ivashkevich, A. N., & Sprung, C. N. (2012) · PLoS ONE · doi:10.1371/journal.pone.0053358 · Cited by 33
“Skin cancer commonly occurs in these patients who are unable to properly repair UV induced DNA damage [10].”
BackgroundSomatic Niche Cells Regulate the CEP-1/p53-Mediated DNA Damage Response in Primordial Germ Cells
Ou, H., Kim, C. S. K., Uszkoreit, S., Wickström, S. A., & Schumacher, B. (2019) · Developmental Cell · doi:10.1016/j.devcel.2019.06.012 · Cited by 36
Schalow, B. J., Courcelle, C. T., & Courcelle, J. (2012) · Journal of Bacteriology · doi:10.1128/jb.06725-11 · Cited by 35
“Finally, given the predominant neurological symptoms associated with CS patients (13, 27, 57), it seems possible that the effects of TCR at oxidative lesions may also be of consequence in nondividing human cells.”
BackgroundVélez-Cruz, R., Zadorin, A. S., Coin, F., & Egly, J. (2012) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1213076110 · Cited by 34
“Mutations can ultimately cause cancers, and the arrest of cellular processes can induce cell death, which can result in premature aging (3, 4).”
BackgroundZhu, M., Shi, T., Hu, H., He, J., Wang, M., Li, J., Yang, Y.-J., Wang, J.-C., Sun, M.-H., Chen, H., et al. (2012) · PLoS ONE · doi:10.1371/journal.pone.0041500 · Cited by 35
“xeroderma pigmentosum, Cockayne syndrome and tri-chothiodystrophy, and some of these patients are prone to cancer [8,9].”
BackgroundA C. elegans homolog of the Cockayne syndrome complementation group A gene
Babu, V., Hofmann, K., & Schumacher, B. (2014) · DNA Repair · doi:10.1016/j.dnarep.2014.09.011 · Cited by 31
Crystal structure of the catalytic core of Rad2: insights into the mechanism of substrate binding
Mietus, M., Nowak, E., Jaciuk, M., Kustosz, P., Studnicka, J., & Nowotny, M. (2014) · Nucleic Acids Research · doi:10.1093/nar/gku729 · Cited by 31
“In humans, mutations in NER components lead to diseases, such as xeroderma pigmentosum (XP) with extreme susceptibility to UV radiation and an increased risk of skin cancer (2), Cockayne syndrome (CS) with developmental impairment, premature aging and sunlight sensitivity, and trichothiodystrophy with developmental im…”
BackgroundSpotlight on ‘xeroderma pigmentosum’
Fassihi, H. (2012) · Photochemical & Photobiological Sciences · doi:10.1039/c2pp25267h · Cited by 28
Nucleotide excision repair: a versatile and smart toolkit
Zhang, X., Yin, M., & Hu, J. (2022) · Acta Biochimica et Biophysica Sinica · doi:10.3724/abbs.2022054 · Cited by 42
“Defects of NER factors in humans can cause several inherited diseases with far different phenotypes, including xeroderma pigmentosum (XP), Cockayne syndrome (CS), and ultraviolet sensitive syndrome (UVSS) [23].”
BackgroundTGF-β signaling links E-cadherin loss to suppression of nucleotide excision repair
Qiang, L., Shah, P., Barcellos‐Hoff, M. H., & He, Y. Y. (2015) · Oncogene · doi:10.1038/onc.2015.390 · Cited by 29
“Mammalian NER consists of two distinct subpathways: global genome NER (GG-NER), which operates throughout the entire genome, and transcription-coupled NER (TC-NER), which specifically removes lesions on the transcribed DNA strand of active genes (4, 5, 8-10).”
InfluentialA Rapid Assay for Measuring Nucleotide Excision Repair by Oligonucleotide Retrieval
Shen, J.-C., Fox, E., Ahn, E. H., & Loeb, L. A. (2014) · Scientific Reports · doi:10.1038/srep04894 · Cited by 27
DNA Repair of Cancer Stem Cells
Mathews, L. A., Cabarcas, S. M., & Hurt, E. M. (2013) · Springer Netherlands · doi:10.1007/978-94-007-4590-2 · Cited by 30
NEAT1_2–SFPQ axis mediates cisplatin resistance in liver cancer cells in vitro
Ru, Y., Chen, X., Guo, W.-Z., Gao, S.-S., Qi, Y.-J., Chen, P., Feng, X.-S., & Zhang, S.-J. (2018) · OncoTargets and Therapy · doi:10.2147/ott.s163774 · Cited by 29
“DNA helix distortion is caused by platinum drug-induced DNA damage triggering the activation of NER system,(6) which removes the DNA lesions caused by platinum drugs via sensing and excision of the lesion followed by DNA re-synthesis and ligation.(7) In platinum drug sensitive cells, the prolonged correspondence: shui…”
Role of mitochondrial dysfunction in the pathophysiology of DNA repair disorders
Mori, M. P., & de Souza-Pinto, N. C. (2017) · Cell Biology International · doi:10.1002/cbin.10917 · Cited by 31
“Besides XP and CS, there are at least two other NER disorders: trichothiodystrophy (TTD) and UV-sensitivity syndrome (UVSS) (Cleaver et al., 2009).”
BackgroundInfluentialKemp, M. G., Spandau, D. F., Simman, R., & Travers, J. B. (2017) · Journal of Biological Chemistry · doi:10.1074/jbc.m116.765883 · Cited by 30
“Nucleotide excision repair is the sole mechanism for removing these photoproducts from genomic DNA in human cells (1, 2), and mutations in excision repair genes give rise to the skin cancer-prone disease xeroderma pigmentosum and to the premature aging disease Cockayne syndrome (3, 4).”
BackgroundBensenouci, S., Louhibi, L., de Verneuil, H., Mahmoudi, K., & Saidi-Mehtar, N. (2016) · BioMed Research International · doi:10.1155/2016/2180946 · Cited by 29
Barclay, S. S., Tamura, T., Ito, H., Fujita, K., Tagawa, K., Shimamura, T., Katsuta, A., Shiwaku, H., Sone, M., Imoto, S., et al. (2013) · Human Molecular Genetics · doi:10.1093/hmg/ddt524 · Cited by 29
“Dysfunction of NER has been linked to a spectrum of disorders involving neurodevelopmental abnormalities; however, RPA70 has not been previously associated with a specific disease pathogenesis (71).”
BackgroundOculocutaneous albinism and skin cancer risk
de Vijlder, H. D., de Vijlder, J. D., & Neumann, H. (2013) · Journal of the European Academy of Dermatology and Venereology · doi:10.1111/j.1468-3083.2012.04633.x · Cited by 29
The knock-down of ERCC1 but not of XPF causes multinucleation.
Rageul, J., Frémin, C., Ezan, F., Baffet, G., & Langouët, S. (2011) · DNA Repair · doi:10.1016/j.dnarep.2011.07.005 · Cited by 29
Nucleotide excision repair deficiency in melanoma in response to UVA
Murray, H. C., Maltby, V. E., Smith, D. W., & Bowden, N. A. (2015) · Experimental Hematology & Oncology · doi:10.1186/s40164-016-0035-4 · Cited by 28
“The NER pathway possesses two different mechanisms for detection of DNA damage; Transcription Coupled Repair (TCR) and Global Genome Repair (GGR; for extensive review, see [29–32]).”
BackgroundComputer‐aided drug design of small molecule inhibitors of the ERCC1‐XPF protein–protein interaction
Gentile, F., Elmenoufy, A. H., Ciniero, G., Jay, D., Karimi‐Busheri, F., Barakat, K., Weinfeld, M., West, F. G., & Tuszyński, J. A. (2019) · Chemical Biology & Drug Design · doi:10.1111/cbdd.13660 · Cited by 32
“…pathways are associated with rare ge-netic diseases, such as xeroderma pigmentosum, Cockayne's syndrome, and trichothiodystrophy, whose affected individuals show propensity for cancer, neurological deficiencies, and physical abnormalities (Bukowska & Karwowski, 2018; Cleaver, Lam, & Revet, 2009).”
BackgroundGlobal-genome Nucleotide Excision Repair Controlled by Ubiquitin/Sumo Modifiers
Rüthemann, P., Pogliano, C. B., & Naegeli, H. (2016) · Frontiers in Genetics · doi:10.3389/fgene.2016.00068 · Cited by 28
“Conversely, CETN2 remains associated with target sites (Dantas et al., 2013) where XPC provides a platform for the recruitment of TFIIH.”
BackgroundMolecular mechanisms of xeroderma pigmentosum (XP) proteins
Koch, S. C., Simon, N., Ebert, C., & Carell, T. (2016) · Quarterly Reviews of Biophysics · doi:10.1017/s0033583515000268 · Cited by 33
“Mutations in human XPD lead to three different inherited diseases: XP, the CS and TTD. XPD is thought to be responsible for the damage verification (Mathieu et al. 2010; Naegeli et al. 1993) before the recruitment of downstream NER factors to the lesion site occurs.”
BackgroundInfluentialMuylaert, I., & Elias, P. (2010) · Journal of Biological Chemistry · doi:10.1074/jbc.m110.107920 · Cited by 26
Photosensitive human syndromes
Spivak, G., & Hanawalt, P. C. (2015) · Mutation Research - Fundamental and Molecular Mechanisms of Mutagenesis · doi:10.1016/j.mrfmmm.2014.11.003 · Cited by 27
Conceptual developments in the causes of Cockayne syndrome
Cleaver, J. E., Bezrookove, V., Revet, I. M., & Huang, E. J. (2013) · Mechanisms of Ageing and Development · doi:10.1016/j.mad.2013.02.005 · Cited by 29
Self-citationMPK-1/ERK pathway regulates DNA damage response during development through DAF-16/FOXO
Bianco, J. N., & Schumacher, B. (2018) · Nucleic Acids Research · doi:10.1093/nar/gky404 · Cited by 26
“Congenital defects in NER give rise to skin cancer susceptibility, developmental failure and premature aging with complex and yet incompletely understood genotype–phenotype correlation (1).”
BackgroundWang, M., Li, Q., Gu, C., Zhu, Y., Yang, Y., Wang, J., Li, J., He, J., Ye, D., & Wei, Q. (2016) · Oncotarget · doi:10.18632/oncotarget.13848 · Cited by 24
“, CSA /ERCC8 and CSB/ERCC6) encoding proteins linked to Cockayne’s syndrome, are involved in the pathway [2, 3], among which the XP genes were extensively investigated in the development of cancer, both in vivo and in vitro.”
Hosseini, M., Ezzedine, K., Taïeb, A., & Rezvani, H. R. (2014) · Journal of Investigative Dermatology · doi:10.1038/jid.2014.365 · Cited by 33
“, does not cause CS- and TTD-like progeroid features but instead leads to a very mild aging phenotype (Andressoo et al., 2006, 2009; Cleaver et al., 2009).”
BackgroundInfluentialPhotosensitivity syndrome brings to light a new transcription-coupled DNA repair cofactor
Cleaver, J. (2012) · Nature Genetics · doi:10.1038/ng.2255 · Cited by 26
Self-citationRad26p regulates the occupancy of histone H2A–H2B dimer at the active genes in vivo
Malik, S., Chaurasia, P., Lahudkar, S., Uprety, B., & Bhaumik, S. R. (2011) · Nucleic Acids Research · doi:10.1093/nar/gkr1244 · Cited by 26
Coordinated roles of SLX4 and MutSβ in DNA repair and the maintenance of genome stability
Young, S., & West, S. (2021) · Critical reviews in biochemistry and molecular biology · doi:10.1080/10409238.2021.1881433 · Cited by 25
“XP is characterized by extreme UV sensitivity and cancer predisposition, whereas individuals with CS exhibit developmental and neurological pathologies (Cleaver et al. 2009; Faridounnia et al. 2018).”
BackgroundLiakos, A., Konstantopoulos, D., Lavigne, M. D., & Fousteri, M. I. (2020) · Nature Communications · doi:10.1038/s41467-020-14566-9 · Cited by 27
Regulation of XPC deubiquitination by USP11 in repair of UV-induced DNA damage
Shah, P., Qiang, L., Yang, S., Soltani, K., & He, Y. (2017) · Oncotarget · doi:10.18632/oncotarget.22105 · Cited by 27
“Of the xeroderma pigmentosum complementation group A-G (XPA-XPG) factors identified in the GGNER process, XPC plays a vital role in the initial DNA damage recognition step in GG-NER [4-6, 11-13], and in preventing carcinogenesis in various organs, especially skin carcinogenesis [14-18].”
BackgroundInfluentialPoly-ADP-ribosylation signaling during DNA damage repair
Timinszky, G. (2015) · Frontiers in bioscience · doi:10.2741/4318 · Cited by 26
“UV-C light-induced DNA lesions, such as cyclobutane pyrimidine dimers (CPDs) and pyrimidine (6-4) pyrimidine photoproducts (6-4PPs), which are repaired by nucleotide excision repair (NER), are also strong activators of PARylation.”
BackgroundMori, M. P., Costa, R. A. P. E., Soltys, D. T., Freire, T. D. S., Rossato, F. A., Amigo, I., Kowaltowski, A. J., Vercesi, A. E., & de Souza-Pinto, N. C. (2017) · Scientific Reports · doi:10.1038/s41598-017-00130-x · Cited by 28
Revet, I. M., Feeney, L., Tang, A. A., Huang, E. J., & Cleaver, J. E. (2012) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1202621109 · Cited by 25
“4 J/m(2)/sec) or to continuous exposure to rotenone, an inhibitor of complex I in the mitochondria that releases endogenous reactive oxygen (3).”
BackgroundSelf-citationA Novel Link to Base Excision Repair
Wilson, D., & Seidman, M. (2010) · TIBS -Trends in Biochemical Sciences. Regular ed · doi:10.1016/j.tibs.2010.01.003 · Cited by 24
Musich, P. R., Li, Z., & Zou, Y. (2017) · Advances in Experimental Medicine and Biology · doi:10.1007/978-3-319-56017-5_4 · Cited by 23
Santiago, K. M., Castro, L. P., Neto, J. P. D., de Nóbrega, A. F., Pinto, C. A. L., Ashton‐Prolla, P., Vairo, F. P. E., de Medeiros, P. F. V., Ribeiro, E. M., Ribeiro, B. F. R., et al. (2020) · Journal of the European Academy of Dermatology and Venereology · doi:10.1111/jdv.16405 · Cited by 24
Brace, L. E., Vose, S. C., Vargas, D., Zhao, S., Wang, X., & Mitchell, J. R. (2013) · Aging Cell · doi:10.1111/acel.12142 · Cited by 25
“Numerous mouse models of CS (Csb / , Csa / ) and XPCS (XpdXPCS/ XPCS) have been established, however, with a generally milder phenotype than CS (van de Ven et al., 2007).”
DNA Damage and Repair in Translational Oncology: An Overview
Reed, E. (2010) · Clinical Cancer Research · doi:10.1158/1078-0432.ccr-10-0528 · Cited by 23
Genome instability: Linking ageing and brain degeneration
Barzilai, A., Schumacher, B., & Shiloh, Y. (2016) · Mechanisms of Ageing and Development · doi:10.1016/j.mad.2016.03.011 · Cited by 22
“…repair deficiencies, particularly in mice with acute deficiencies in the nucleotide excision Page | 12 repair (NER) pathway (Borgesius et al., 2011; Cleaver et al., 2009; de Waard et al., 2010; Diderich et al., 2011; Dolle et al., 2011; Gregg et al., 2011; Jaarsma et al., 2011; Maslov et al.,…”
BackgroundNucleotide Excision Repair: From Neurodegeneration to Cancer
Liakos, A., Lavigne, M. D., & Fousteri, M. I. (2017) · Advances in experimental medicine and biology · doi:10.1007/978-3-319-60733-7_2 · Cited by 24
Photobiological Origins of the Field of Genomic Maintenance
Ganesan, A., & Hanawalt, P. (2016) · Photochemistry and Photobiology · doi:10.1111/php.12542 · Cited by 22
Sarmini, L., Meabed, M., Emmanouil, E., Atsaves, G., Robeska, E., Karwowski, B. T., Campalans, A., Gimisis, T., & Khobta, A. (2023) · Nucleic Acids Research · doi:10.1093/nar/gkad256 · Cited by 20
“The discovery of their molecular details led to understanding that genetic defects in the components of GG-NER and TC-NER cause different disease phenotypes, as extensively reviewed elsewhere (2–4).”
UV Protection in the Cornea: Failure and Rescue
Volatier, T. L. A., Schumacher, B., Cursiefen, C., & Notara, M. (2022) · Biology · doi:10.3390/biology11020278 · Cited by 21
“This is in contrast with the skin which lacks this excess K+ and instead regularly sees UV-triggered apoptosis in the form of sunburn cells [165,172].”
BackgroundRecent Developments in the Diagnosis and Management of Photosensitive Disorders
AL-NAHHAS, A. M., Oberlin, D. M., Braunberger, T. L., & Lim, H. W. (2018) · American Journal of Clinical Dermatology · doi:10.1007/s40257-018-0365-6 · Cited by 24
PostExcision Events in Human Nucleotide Excision Repair
Kemp, M. G., & Hu, J. (2016) · Photochemistry and Photobiology · doi:10.1111/php.12641 · Cited by 30
Quality control mechanisms in cellular and systemic DNA damage responses
Ermolaeva, M., Dakhovnik, A., & Schumacher, B. (2015) · Ageing Research Reviews · doi:10.1016/j.arr.2014.12.009 · Cited by 23
Genome instability mechanisms and the structure of cancer genomes
Cassidy, L. D., & Venkitaraman, A. R. (2012) · Current Opinion in Genetics & Development · doi:10.1016/j.gde.2012.02.003 · Cited by 22
Subhadarshani, S., Athar, M., & Elmets, C. A. (2020) · Current Dermatology Reports · doi:10.1007/s13671-020-00307-0 · Cited by 21
Interplay between the DNA Damage Response and Immunotherapy Response in Cancer
Lee, E. C. Y., Kok, J. S.-T., Teh, B. T., & Lim, K. S. (2022) · International Journal of Molecular Sciences · doi:10.3390/ijms232113356 · Cited by 22
“Biallelic germline mutations in GGNER pathway proteins cause xeroderma pigmentosa (XP), a UV sensitivity syndrome which increases the risk of skin cancers [71,72].”
BackgroundGenome Integrity and Neurological Disease
Scheijen, E. E. M., & Wilson, D. M. (2022) · International Journal of Molecular Sciences · doi:10.3390/ijms23084142 · Cited by 24
“Nucleotide Excision Repair NER is divided into two major sub-pathways, global-genome (GG-NER) and transcriptioncoupled (TC-NER), molecular processes that cope with large, helix-distorting adducts, most notably UV-light induced (6-4)photoproducts and cyclopyrimidine dimers [71,72] (Figure 5).”
BackgroundCircadian Rhythm of NER and ATR Pathways
Kang, T. (2021) · Biomolecules · doi:10.3390/biom11050715 · Cited by 24
“Mutations in genes associated with the NER mechanism, consequently, cause a wide range of cutaneous symptoms, from mild solar sensitivity to severe skin cancers [18].”
BackgroundYou, X., Guo, W., Wang, L., Hou, Y., Zhang, H., Pan, Y., Han, R., Huang, M., Liao, L., & Chen, Y. (2017) · Cellular Signalling · doi:10.1016/j.cellsig.2017.04.023 · Cited by 22
Understanding photodermatoses associated with defective DNA repair
Giordano, C. N., Yew, Y. W., Spivak, G., & Lim, H. W. (2016) · Journal of the American Academy of Dermatology · doi:10.1016/j.jaad.2016.03.045 · Cited by 22
Jerbi, M., Rekaya, M. B., Naouali, C., Jones, M., Messaoud, O., Tounsi, H., Nagara, M., Chargui, M., Kéfi, R., Boussen, H., et al. (2015) · British Journal of Dermatology · doi:10.1111/bjd.14046 · Cited by 25
Aging on a different scale – chronological versus pathology-related aging
Melis, J. P. M., Jonker, M. J., Vijg, J., Hoeijmakers, J. H. J., Breit, T. M., & STEEG, H. V. (2013) · Aging · doi:10.18632/aging.100606 · Cited by 21
“patients [13, 14] to over 100 years for centenarians.”
BackgroundPérez‐Mayoral, J., Pacheco‐Torres, A. L., Morales, L., Acosta, H., Matta, J. L., & Dutil, J. (2013) · Molecular Carcinogenesis · doi:10.1002/mc.22056 · Cited by 20
“This syndrome is characterized by severe skin sensitivity to sun, as well as drastic increases in the risk of skin cancer and other cancers [28,29].”
BackgroundMitochondrial CSA and CSB: Protein interactions and protection from ageing associated DNA mutations
Kamenisch, Y., & Berneburg, M. (2013) · Mechanisms of Ageing and Development · doi:10.1016/j.mad.2013.03.005 · Cited by 25
“(TCR) (Andressoo et al., 2006; Balajee et al., 1997; Berneburg and Lehmann, 2001; Cleaver et al., 2009; Hamel et al., 1996; Lehmann, 1995) and in base excision repair (BER) (Dianov et al.”
BackgroundInfluentialAging—RNA in development and disease
Cookson, M. (2011) · Wiley Interdisciplinary Reviews - RNA · doi:10.1002/wrna.109 · Cited by 20
Protecting the genome from mdm2 and mdmx
Melo, A. N., & Eischen, C. M. (2012) · Genes & Cancer · doi:10.1177/1947601912454139 · Cited by 20
“Humans with defects in PolH develop xeroderma pigmentosum variant syndrome (XPV), are sensitive to UV irradiation, and have increased incidence of skin cancer.(80) Since the experiments on Mdm2 and PolH were performed in cell lines, it may be worthwhile testing the role of this interaction in mice to determine whether…”
BackgroundProtein-protein interactions in the core nucleotide excision repair pathway
D’Souza, A., Kim, M., Chazin, W., & Schärer, O. D. (2024) · DNA repair · doi:10.1016/j.dnarep.2024.103728 · Cited by 16
Mediator Roles Going Beyond Transcription
André, K. M., Sipos, E. H., & Soutourina, J. (2020) · Trends in Genetics · doi:10.1016/j.tig.2020.08.015 · Cited by 31
Phosphorylation of xeroderma pigmentosum group C regulates ultraviolet-induced DNA damage repair
Shah, P., Zhao, B., Qiang, L., & He, Y. (2018) · Nucleic Acids Research · doi:10.1093/nar/gky239 · Cited by 24
“The core factors of the NER pathway have been identified: the members of the XP complementation group A-G (XPA-XPG) (7,8).”
BackgroundGaillard, H., & Aguilera, A. (2014) · PLoS Genetics · doi:10.1371/journal.pgen.1004203 · Cited by 20
“Syndrome (CS) and UV Sensitivity Syndrome (reviewed in [5,6]).”
BackgroundRenaud, E., & Rosselli, F. (2013) · PLoS ONE · doi:10.1371/journal.pone.0053693 · Cited by 20
“Inactivation of any of these genes is associated with cellular hypersensitivity to UVC, increased UV-induced mutagenesis and inefficient removal of both CPDs and 6,4-PPs [5].”
BackgroundDNA Damage Response Pathways and Cancer
Ford, J. M., & Kastan, M. B. (2014) · Elsevier eBooks · doi:10.1016/b978-1-4557-2865-7.00010-2 · Cited by 14
Absence of skin cancer in the DNA repair-deficient disease Cockayne Syndrome (CS): a survey study
Zhang, W. R., Garrett, G. L., Cleaver, J. E., & Arron, S. T. (2016) · Journal of the American Academy of Dermatology · doi:10.1016/j.jaad.2016.01.003 · Cited by 19
Self-citationHoribata, K., Kono, S., Ishigami, C., Zhang, X. C., Aizawa, M., Kako, Y., Ishii, T., Kosaki, R., Saijo, M., & Tanaka, K. (2015) · Journal of Human Genetics · doi:10.1038/jhg.2015.18 · Cited by 19
Cell Aging: Molecular Mechanisms and Implications for Disease
Behl, C., & Ziegler, C. A. (2013) · SpringerBriefs in Molecular Medicine · doi:10.1007/978-3-642-45179-9 · Cited by 19
“In addition to the relevance of defects of DNA repair processes in cancer development (Curtin 2012) more and more a role for a disturbed DNA repair is discussed also for neurodegenerative disorders (Cleaver et al. 2009; Jeppesen et al. 2011).”
BackgroundDNA damage response, a double-edged sword for vascular aging
Zhang, X., Zhao, Q., Wang, T., Long, Q., Sun, Y., Jiao, L., & Gullerová, M. (2023) · Ageing Research Reviews · doi:10.1016/j.arr.2023.102137 · Cited by 17
“In the GGR pathway, the entire genome is examined for helix distortions by XPC complexed with hRAD23B and centrin 2, whereas TCR only repairs lesions in the transcribed strand of active genes when RNA polymerase II is stalled during transcript elongation (Marteijn et al., 2014).”
Opportunities for translation: Targeting DNA repair pathways in pancreatic cancer
Maginn, E. N., de Sousa, C. H., Wasan, H. S., & Stronach, E. A. (2014) · Biochimica et Biophysica Acta (BBA) - Reviews on Cancer · doi:10.1016/j.bbcan.2014.04.002 · Cited by 14
Eukaryotic Nucleotide Excision Repair
Houten, B. V., & Kong, M. (2015) · Elsevier eBooks · doi:10.1016/b978-0-12-394447-4.10045-8 · Cited by 7
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Impact of DNA repair and stability defects on cortical development
Bianchi, F. T., Berto, G. E., & Cunto, F. D. (2018) · Cellular and Molecular Life Sciences · doi:10.1007/s00018-018-2900-2 · Cited by 23
DNA polymerase eta is regulated by poly(rC)-binding protein 1 via mRNA stability
Ren, C., Cho, S.-J., Jung, Y.-S., & Chen, X.-B. (2014) · Biochemical Journal · doi:10.1042/bj20141164 · Cited by 17
E2F1 and p53 Transcription Factors as Accessory Factors for Nucleotide Excision Repair
Vélez-Cruz, R., & Johnson, D. G. (2012) · International Journal of Molecular Sciences · doi:10.3390/ijms131013554 · Cited by 15
Chung, G., O’Neil, N. J., & Rose, A. M. (2011) · DNA repair · doi:10.1016/j.dnarep.2011.09.011 · Cited by 16
A unified model for the molecular basis of Xeroderma pigmentosum-Cockayne Syndrome
Moriel-Carretero, M., Herrera-Moyano, E., & Aguilera, A. (2015) · Rare Diseases · doi:10.1080/21675511.2015.1079362 · Cited by 16
NAT10 regulates the repair of UVB-induced DNA damage and tumorigenicity
Yang, Z., Wilkinson, E., Cui, Y., Li, H., & He, Y. (2023) · Toxicology and Applied Pharmacology · doi:10.1016/j.taap.2023.116688 · Cited by 19
Metadata
- Authors
- Cleaver, J. E., Lam, E. T., & Revet, I.
- Affiliations
- University of California, San Francisco (US)
- Corresponding author
- Cleaver, James E.
- ORCID
- Cleaver, James E.
- Venue
- Nature Reviews Genetics
- Published
- 2009-10-07
- Volume
- 10
- Issue
- 11
- Pages
- 756-768
- ISSN
- 1471-0056 (ISSN-L)
- 1471-0064
- OpenAlex
- W2026776398
- Cited by
- 428
- References
- 0
- Citations by year
- 2026: 7 · 2025: 16 · 2024: 9 · 2023: 14 · 2022: 23 · 2021: 20 · 2020: 30 · 2019: 24 · 2018: 24 · 2017: 29 · 2016: 35 · 2015: 30 · 2014: 43 · 2013: 38 · 2012: 33
- FWCI
- 2.12
- Type
- journal article
- Language
- en
- Open access
- closed
- Locations
- Nature Reviews Genetics (publishedVersion)
- PubMed (publishedVersion)
- Funders
- Iris O'Brien Foundation
- National Institute of Neurological Disorders and Stroke (R01NS052781)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › DNA Repair Mechanisms
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Genomics and Rare Diseases
- Health Sciences › Medicine › Dermatology › Genetic and rare skin diseases.
- Keywords
- nucleotide excision repair, genetic heterogeneity, xeroderma pigmentosum, Cockayne syndrome, trichothiodystrophy, transcription arrest, DNA repair deficiency, skin cancer predisposition, neurological symptoms, developmental abnormalities, loss-of-function mutations, protein structure, genotype-phenotype correlation
- MeSH terms
- Animals, Cockayne Syndrome, DNA Repair, Humans, Genetic Variation, Xeroderma Pigmentosum, Trichothiodystrophy Syndromes
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