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Disorders of nucleotide excision repair: the genetic and molecular basis of heterogeneity
Abstract
Mutations in genes on the nucleotide excision repair pathway are associated with diseases, such as xeroderma pigmentosum, Cockayne syndrome and trichothiodystrophy, that involve skin cancer and developmental and neurological symptoms. These mutations cause the defective repair of damaged DNA and increased transcription arrest but, except for skin cancer, the links between repair and disease have not been obvious. Widely different clinical syndromes seem to result from mutations in the same gene, even when the mutations result in complete loss of function. The mapping of mutations in recently solved protein structures has begun to clarify the links between the molecular defects and phenotypes, but the identification of additional sources of clinical variability is still necessary.
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“Both XP and CS patients have defects in NER.”
From Why Cockayne syndrome patients do not get cancer despite their DNA repair deficiency (2016) · cites this paper as [1]
In the citing paper
“CS patients are characterized by neurological and developmental symptoms such as early cessation of growth, microcephaly, mental retardation with dysmyelination, cachexia, and a greatly reduced life expectancy (1).”
From Why Cockayne syndrome patients do not get cancer despite their DNA repair deficiency (2016) · cites this paper as [1]
In the citing paper
“CS patients, defective in the TCR branch of NER (1, 27), present a very different clinical picture, one of developmental defects and neurodegeneration; many but not all patients are also photosensitive, some developing blistering sunburns (5, 28).”
From Why Cockayne syndrome patients do not get cancer despite their DNA repair deficiency (2016) · cites this paper as [1]
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Fousteri, M., Vermeulen, W., van Zeeland, A. A., & Mullenders, L. H. F. (2006) · Molecular Cell · doi:10.1016/j.molcel.2006.06.029 · Cited by 387
RetractedMoser, J., Kool, H., Giakzidis, I., Caldecott, K., Mullenders, L. H. F., & Fousteri, M. I. (2007) · Molecular Cell · doi:10.1016/j.molcel.2007.06.014 · Cited by 261
RetractedGenome maintenance mechanisms for preventing cancer
Hoeijmakers, J. H. J. (2001) · Nature · doi:10.1038/35077232 · Cited by 3,939
Defective repair replication of DNA in xeroderma pigmentosum
CLEAVER, J. E. (1968) · Nature · doi:10.1038/218652a0 · Cited by 1,729
Self-citationMechanism of open complex and dual incision formation by human nucleotide excision repair factors
Evans, E., Moggs, J. G., Hwang, J. R., Egly, J., & Wood, R. D. (1997) · The EMBO Journal · doi:10.1093/emboj/16.21.6559 · Cited by 500
Cancer in xeroderma pigmentosum and related disorders of DNA repair
Cleaver, J. E. (2005) · Nature Reviews Cancer · doi:10.1038/nrc1652 · Cited by 427
Self-citationFan, L., Fuss, J. O., Cheng, Q. J., Arvai, A. S., Hammel, M., Roberts, V. A., Cooper, P. K., & Tainer, J. A. (2008) · Cell · doi:10.1016/j.cell.2008.04.030 · Cited by 369
Selby, C. P., & Sancar, A. (1997) · Journal of Biological Chemistry · doi:10.1074/jbc.272.3.1885 · Cited by 267
The Y-family DNA polymerase κ (pol κ) functions in mammalian nucleotide-excision repair
Ogi, T., & Lehmann, A. R. (2006) · Nature Cell Biology · doi:10.1038/ncb1417 · Cited by 211
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Sorted by citations
The DNA damage response and cancer therapy
Lord, C. J., & Ashworth, A. (2012) · Nature · doi:10.1038/nature10760 · Cited by 1,649
“Whereas small base adducts are repaired by BER, some of the bulkier single-strand lesions that distort the DNA helical structure, such as those caused by ultraviolet light, are processed by nucleotide excision repair (NER”
BackgroundMechanisms of trinucleotide repeat instability during human development
McMurray, C. T. (2010) · Nature Reviews Genetics · doi:10.1038/nrg2828 · Cited by 496
DNA damage responses and p53 in the aging process
Ou, H.-L., & Schumacher, B. (2018) · Blood · doi:10.1182/blood-2017-07-746396 · Cited by 377
Nuclear DNA damage signalling to mitochondria in ageing
Fang, E. F., Scheibye-Knudsen, M., Chua, K. F., Mattson, M. P., Croteau, D. L., & Bohr, V. A. (2016) · Nature Reviews Molecular Cell Biology · doi:10.1038/nrm.2016.14 · Cited by 387
Progeria syndromes and ageing: what is the connection?
Burtner, C. R., & Kennedy, B. K. (2010) · Nature Reviews Molecular Cell Biology · doi:10.1038/nrm2944 · Cited by 386
Panich, U., Sittithumcharee, G., Rathviboon, N., & Jirawatnotai, S. (2016) · Stem Cells International · doi:10.1155/2016/7370642 · Cited by 374
Mutations in ERCC4, encoding the DNA-repair endonuclease XPF, cause Fanconi anemia.
Bogliolo, M., Schuster, B., Stoepker, C., Derkunt, B., Su, Y., Raams, A., Trujillo, J. P., Minguillón, J., Ramírez, M., Pujol, R., et al. (2013) · American Journal of Human Genetics · doi:10.1016/j.ajhg.2013.04.002 · Cited by 334
Protecting the mitochondrial powerhouse
Scheibye‐Knudsen, M., Fang, E. F., Croteau, D. L., Wilson, D. M., & Bohr, V. A. (2014) · Trends in Cell Biology · doi:10.1016/j.tcb.2014.11.002 · Cited by 337
“Nucleotide excision repair handles bulky base modifications or other helix-distorting alterations to DNA [69].”
BackgroundPARP1 promotes nucleotide excision repair through DDB2 stabilization and recruitment of ALC1
Pines, A., Vrouwe, M. G., Marteijn, J. A. F., Typas, D., Luijsterburg, M. S., Cansoy, M., Hensbergen, P. J., Deelder, A. M., de Groot, A., Matsumoto, S., et al. (2012) · The Journal of Cell Biology · doi:10.1083/jcb.201112132 · Cited by 280
“The importance of NER in protecting organisms against solar UV-induced DNA damage is underscored by the hereditary disease xeroderma pigmentosum (XP), which is clinically characterized by hypersensitivity to sunlight and predisposition to skin cancer (Cleaver et al., 2009).”
BackgroundInfluentialHu, J., Adar, S., Selby, C. P., Lieb, J. D., & Sancar, A. (2015) · Genes & Development · doi:10.1101/gad.261271.115 · Cited by 254
“Mutations that inactivate global genome repair cause the genetic diseases xeroderma pigmentosum (XP), while those that inactivate transcription-coupled repair cause Cockayne syndrome (CS) (Cleaver et al. 2009).”
BackgroundOxidative DNA damage and nucleotide excision repair
Melis, J. P. M., van Steeg, H., & Luijten, M. (2013) · Antioxidants & Redox Signaling · doi:10.1089/ars.2012.5036 · Cited by 234
“For lesions repaired through NER, the interaction with TFIIH is necessary to localize XPG to sites of repair.”
BackgroundInfluentialPoly(ADP-Ribose) polymerase (PARP) inhibitors: Exploiting a synthetic lethal strategy in the clinic
Yap, T. A., Sandhu, S. K., Carden, C. P., & Bono, J. S. D. (2011) · CA A Cancer Journal for Clinicians · doi:10.3322/caac.20095 · Cited by 218
Kim, I., & He, Y. (2014) · Genes & Diseases · doi:10.1016/j.gendis.2014.08.005 · Cited by 231
Robu, M., Shah, R. G., Petitclerc, N., Brind’Amour, J., Kandan-Kulangara, F., & Shah, G. M. (2013) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1209507110 · Cited by 177
“Among mammalian DNA repair pathways, PARP-1 has been implicated in base excision repair, homologous recombination, and nonhomologous end-joining pathways (2, 3), but we do not know its role in the most versatile nucleotide excision repair (NER) pathway that removes a wide variety of DNA lesions, including UV-induced t…”
BackgroundZghal, M., Fazaa, B., Abdelhak, S., & Mokni, M. (2018) · Pädiatrie & Pädologie · doi:10.1007/s00608-023-01106-z · Cited by 171
Smith, J. A., Park, S., Krause, J. S., & Banik, N. L. (2013) · Neurochemistry International · doi:10.1016/j.neuint.2013.02.013 · Cited by 173
“oxidized nucleotides within DNA lesions (Cleaver et al., 2009; Nouspikel and Hanawalt, 2002).”
DNA replication fidelity and cancer
Preston, B. D., Albertson, T. M., & Herr, A. J. (2010) · Seminars in Cancer Biology · doi:10.1016/j.semcancer.2010.10.009 · Cited by 160
“[PubMed: 11927276] [24].”
BackgroundReplication of G Quadruplex DNA
Lerner, L. K., & Sale, J. E. (2019) · Genes · doi:10.3390/genes10020095 · Cited by 156
“XPD is one of the helicases of the TFIIH complex, implicated in basal transcription and nucleotide excision repair (NER) [199].”
BackgroundRepair of Oxidative DNA Damage and Cancer: Recent Progress in DNA Base Excision Repair
Scott, T. L., Rangaswamy, S., Wicker, C. A., & Izumi, T. (2013) · Antioxidants and Redox Signaling · doi:10.1089/ars.2013.5529 · Cited by 162
“This capability of interspecies complementation by some BER genes is a clear difference from other DNA repair pathways, such as NER in which the repair proteins need to interact with each other and with the transcription machinery (30).”
Roles of UVA radiation and DNA damage responses in melanoma pathogenesis
Khan, A. Q., Travers, J. B., & Kemp, M. G. (2018) · Environmental and Molecular Mutagenesis · doi:10.1002/em.22176 · Cited by 152
“The importance of NER to human disease [Cleaver et al., 2009; Marteijn et al., 2014], including UV-induced melanoma, can be observed in patients with the disease XP [Cleaver, 1968], who have a mutation in one of seven different “XP” genes that prevents NER and elevates melanoma and nonmelanoma skin cancer risk by seve…”
BackgroundNucleotide Excision Repair and Transcriptional Regulation: TFIIH and Beyond
Compe, E., & Egly, J. (2016) · Annual Review of Biochemistry · doi:10.1146/annurev-biochem-060815-014857 · Cited by 165
Ming, M., & He, Y. (2012) · Cancer Letters · doi:10.1016/j.canlet.2012.01.003 · Cited by 147
Mechanisms of FUS mutations in familial amyotrophic lateral sclerosis
Shang, Y., & Huang, E. J. (2016) · Brain Research · doi:10.1016/j.brainres.2016.03.036 · Cited by 164
“…as excision repair cross-complementing rodent repair deficiency, complementation group 6 or ERCC6), CSB (ERCC8), XPD (ERCC2) and XPG (ERCC5), develop Cockyane syndrome, characterized by retinal degeneration, microcephaly, deafness and loss of Purkinje cells in the cerebellum (Cleaver et al., 2009).”
Regulation of global genome nucleotide excision repair by SIRT1 through xeroderma pigmentosum C
Ming, M., Shea, C. R., Guo, X., Li, X., Soltani, K., Han, W., & He, Y.-Y. (2010) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1010377108 · Cited by 148
HPV 5 and 8 E6 Abrogate ATR Activity Resulting in Increased Persistence of UVB Induced DNA Damage
Wallace, N. A., Robinson, K. L., Howie, H. L., & Galloway, D. A. (2012) · PLoS Pathogens · doi:10.1371/journal.ppat.1002807 · Cited by 134
“Since nucleotide excision repair (NER) is the DNA damage repair (DDR) pathway responsible for the repair of UVB induced thymine dimers [49], these data suggest that NER is attenuated in HPV 5, 8, and 16 E6 expressing cells.”
BackgroundNucleotide excision repair: Why is it not used to predict response to platinum-based chemotherapy?
Bowden, N. A. (2014) · Cancer Letters · doi:10.1016/j.canlet.2014.01.005 · Cited by 154
“XPD is 50-30 helicase which is a structural component of the TFIIH complex responsible for DNA unwinding surrounding a lesion after damage recognition via GGR or TCR [21].”
BackgroundALS-associated mutation FUS-R521C causes DNA damage and RNA splicing defects.
Qiu, H.-Y., Lee, S., Shang, Y., Wang, W.-Y., Au, K., Kamiya, S., Barmada, S., Finkbeiner, S., Lui, H., Carlton, C. E., et al. (2021) · Journal of Clinical Investigation · doi:10.1172/jci149564 · Cited by 137
“In addition, this abnormal gain-of-function property in FUS-R521C may have a negative impact on the recruitment of other FUS-interacting cofactors, such as chromatin remodeling factor HDAC1, which is normally recruited to DNA damage foci (Figures 3 and 10; ref.”
Diseases Associated with Defective Responses to DNA DamagePreprint
O’Driscoll, M. (2012) · Cold Spring Harbor Perspectives in Biology · doi:10.1101/cshperspect.a012773 · Cited by 145
“Congenital deficiency in GGR results in XP, which is caused by several distinct molecular defects including XPA, XPB(ERCC3), XPC, XPD (ERCC2), XPE (DDB2), XPF (ERCC4), XPG (ERCC5), and XPV (POLH), or trichothiodystrophy (TTD-A, but also specific defects in ERCC2 and ERCC3) (Cleaver et al. 2009).”
BackgroundInfluentialThe phosphorylation of the androgen receptor by TFIIH directs the ubiquitin/proteasome process
Chymkowitch, P., May, N. L., Charneau, P., Compe, E., & Egly, J. (2010) · The EMBO Journal · doi:10.1038/emboj.2010.337 · Cited by 129
“Clinical features such as hypogonadism, cachexia, growth retardation, kyphosis or bone loss, which are related to an AR deficiency (Mooradian et al, 1987; Matsumoto et al, 2008; Vanderschueren et al, 2008) are only developed by certain XP and TTD patients (Lehmann, 2001; Cleaver et al, 2009).”
BackgroundMED23 Mutation Links Intellectual Disability to Dysregulation of Immediate Early Gene Expression
Hashimoto, S., Boissel, S., Zarhrate, M., Rio, M., Münnich, A., Egly, J., & Colleaux, L. (2011) · Science · doi:10.1126/science.1206638 · Cited by 134
The essential and multifunctional TFIIH complex
Rimel, J. K., & Taatjes, D. J. (2018) · Protein Science · doi:10.1002/pro.3424 · Cited by 143
“TTD is associated with mutations in XPB, XPD, or p8 (Table III), with many mutants identified in XPD, including missense and frameshift mutations.(177,182,183) TTD is associated with an overall decrease in cellular TFIIH concentration and basal transcriptional defects.”
BackgroundInfluentialTumour predisposition and cancer syndromes as models to study gene–environment interactions
Carbone, M., Arron, S. T., Beutler, B., Bononi, A., Cavenee, W. K., Cleaver, J. E., Croce, C. M., D’Andrea, A. D., Foulkes, W. D., Gaudino, G., et al. (2020) · Nature reviews. Cancer · doi:10.1038/s41568-020-0265-y · Cited by 198
Self-citationDancing with the DNA damage response: next-generation anti-cancer therapeutic strategies
Minchom, A. R., Aversa, C., & Lopez, J. S. (2018) · Therapeutic Advances in Medical Oncology · doi:10.1177/1758835918786658 · Cited by 138
Systemic DNA damage responses in aging and diseases
Ribezzo, F., Shiloh, Y., & Schumacher, B. (2016) · Seminars in Cancer Biology · doi:10.1016/j.semcancer.2015.12.005 · Cited by 116
Targeting DNA repair pathway in cancer: Mechanisms and clinical application
Wang, M., Chen, S., & Ao, D. (2021) · MedComm · doi:10.1002/mco2.103 · Cited by 140
DNA Repair Pathways and Mechanisms
Dexheimer, T. S. (2012) · Springer eBooks · doi:10.1007/978-94-007-4590-2_2 · Cited by 133
“In addition, these diseases demonstrate overlapping symptoms associated with cancer, developmental delay, immunological defects, neurodegeneration, and premature aging [56, 57].”
BackgroundMueller, M. M., Castells-Roca, L., Babu, V., Ermolaeva, M. A., Müller, R.-U., Frommolt, P., Williams, A. B., Greiss, S., Schneider, J. I., Benzing, T., et al. (2014) · Nature Cell Biology · doi:10.1038/ncb3071 · Cited by 108
“We also included mutants of age-1, the PI(3) kinase acting downstream of DAF-2 (ref.”
Ataxia-telangiectasia (A-T): An emerging dimension of premature ageing
Shiloh, Y., & Lederman, H. M. (2016) · Ageing Research Reviews · doi:10.1016/j.arr.2016.05.002 · Cited by 115
Petr, M. A., Tulika, T., Carmona-Marin, L. M., & Scheibye‐Knudsen, M. (2020) · Trends in Cell Biology · doi:10.1016/j.tcb.2019.12.001 · Cited by 121
Role of AMPK in UVB-induced DNA damage repair and growth control
Wu, C. L., Qiang, L., Han, W., Ming, M., Viollet, B., & He, Y. Y. (2013) · Oncogene · doi:10.1038/onc.2012.279 · Cited by 105
DNA Damage Response and Oxidative Stress in Systemic Autoimmunity
Souliotis, V. L., Vlachogiannis, N. I., Pappa, M. B., Argyriou, A., Ntouros, P. A., & Sfikakis, P. P. (2019) · International Journal of Molecular Sciences · doi:10.3390/ijms21010055 · Cited by 123
METTL14 facilitates global genome repair and suppresses skin tumorigenesis
Yang, Z., Yang, S., Cui, Y., Wei, J., Shah, P., Park, G., Cui, X., He, C., & He, Y. (2021) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.2025948118 · Cited by 133
PTEN Positively Regulates UVB-Induced DNA Damage Repair
Ming, M., Li, F., Shea, C. R., Soltani, K., Zhao, B., Han, W., Smart, R. C., Trempus, C. S., & He, Y. (2011) · Cancer Research · doi:10.1158/0008-5472.can-10-4614 · Cited by 96
Autophagy positively regulates DNA damage recognition by nucleotide excision repair
Qiang, L., Zhao, B., Shah, P., Sample, A., Yang, S., & He, Y. (2015) · Autophagy · doi:10.1080/15548627.2015.1110667 · Cited by 103
“Defects in the global genome NER (GG-NER) subpathway cause xeroderma pigmentosum (XP), an autosomal recessive disorder predisposing affected individuals to cancer development not only in the skin, but also in the brain and lungs.(24,25,28,29) Seven XP group genes plus one variant have been identified as indispensable…”
BackgroundStructure of UvrA nucleotide excision repair protein in complex with modified DNA
Jaciuk, M., Nowak, E., Skowronek, K., Tańska, A., & Nowotny, M. (2011) · Nature Structural & Molecular Biology · doi:10.1038/nsmb.1973 · Cited by 92
The evolution and mechanisms of nucleotide excision repair proteins
Rouillon, C., & White, M. F. (2010) · Research in Microbiology · doi:10.1016/j.resmic.2010.09.003 · Cited by 94
Hypomorphic PCNA mutation underlies a human DNA repair disorder
Baple, E. L., Chambers, H., Cross, H. E., Fawcett, H., Nakazawa, Y., Chioza, B. A., Harlalka, G. V., Mansour, S., Sreekantan-Nair, A., Patton, M. A., et al. (2014) · Journal of Clinical Investigation · doi:10.1172/jci74593 · Cited by 94
“We cannot conclude from our assays whether the defective interactions with XPG, Fen1, and Lig1 are solely responsible for the observed effects on NER, although it is important to note that all these proteins are reported to be involved in this repair pathway (6, 17, 18).”
Nagel, Z. D., Chaim, I. A., & Samson, L. D. (2014) · DNA repair · doi:10.1016/j.dnarep.2014.03.009 · Cited by 91
The relative roles of DNA damage induced by UVA irradiation in human cells
Cortat, B., Garcia, C. C. M., Quinet, A., Schuch, A. P., de Lima-Bessa, K. M., & Menck, C. F. M. (2013) · Photochemical & Photobiological Sciences · doi:10.1039/c3pp50023c · Cited by 80
DNA repair defects and implications for immunotherapy
Bever, K. M., & Le, D. T. (2018) · Journal of Clinical Investigation · doi:10.1172/jci122010 · Cited by 96
“These patients harbor germline defects in one of eight genes in the NER pathway and are highly susceptible to the development of skin and mucous membrane cancers (60).”
True Lies: The Double Life of the Nucleotide Excision Repair Factors in Transcription and DNA Repair
May, N. L., Egly, J., & Coin, F. (2010) · Journal of Nucleic Acids · doi:10.4061/2010/616342 · Cited by 78
“Indeed, the main molecular defect of the XP, CS, and TTD patients resides in a defect in the nucleotide excision repair (NER) pathway [6].”
Genomic instability in breast and ovarian cancers: translation into clinical predictive biomarkers
Vollebergh, M. A., Jonkers, J., & Linn, S. C. (2011) · Cellular and Molecular Life Sciences · doi:10.1007/s00018-011-0809-0 · Cited by 68
“It has been proposed that this difference is caused by the fact that patients with CS or TTD rarely live long enough to develop cancer, whereas mice display a milder, non-lethal neurodegenerative phenotype that allows enough time for cancer to occur [67].”
BackgroundThe role of XPC: Implications in cancer and oxidative DNA damage
Melis, J. P. M., Luijten, M., Mullenders, L. H. F., & STEEG, H. V. (2011) · Mutation Research/Reviews in Mutation Research · doi:10.1016/j.mrrev.2011.07.001 · Cited by 77
“Xeroderma pigmentosum (XP), meaning parchment pigmented skin, was the first human causal NER-deficient disease identified [51].”
BackgroundInfluentialAutophagy in UV Damage Response
Sample, A., & He, Y. (2016) · Photochemistry and Photobiology · doi:10.1111/php.12691 · Cited by 90
Epigenetic regulation of genomic integrity
Deem, A. K., Li, X., & Tyler, J. K. (2012) · Chromosoma · doi:10.1007/s00412-011-0358-1 · Cited by 78
“The detailed molecular mechanism of the NER pathway has been established from in vitro studies (Cleaver et al. 2009; Costa et al. 2003).”
Jaarsma, D., van der Pluijm, I., de Waard, M. C., Haasdijk, E. D., Brandt, R. M. C., Vermeij, M., Rijksen, Y., Maas, A., STEEG, H. V., Hoeijmakers, J. H. J., et al. (2011) · PLoS Genetics · doi:10.1371/journal.pgen.1002405 · Cited by 80
“throughout the genome, transcription-coupled NER (TC-NER) specifically targets transcription-blocking lesions in the template strand of active genes to allow recovery of transcription after damage induction [1,4,7,8].”
BackgroundMolecular Regulation of UV ‐Induced DNA Repair
Shah, P., & He, Y. (2015) · Photochemistry and Photobiology · doi:10.1111/php.12406 · Cited by 75
Sethi, M., Lehmann, A. R., Fawcett, H., Stefanini, M., Jaspers, N. G. J., Mullard, K. S., Turner, S., Robson, A., McGibbon, D., Sarkany, R., et al. (2013) · British Journal of Dermatology · doi:10.1111/bjd.12523 · Cited by 81
Wang, S., Min, Z., Ji, Q., Geng, L., Su, Y., Liu, Z., Hu, H., Wang, L., Zhang, W., Suzuiki, K., et al. (2019) · Protein & Cell · doi:10.1007/s13238-019-0623-2 · Cited by 78
ALS-associated mutation FUS-R521C causes DNA damage and RNA splicing defects
Qiu, H., Lee, S., Shang, Y., Wang, W., Au, K. F., Kamiya, S., Barmada, S. J., Finkbeiner, S. M., Lui, H., Carlton, C. E., et al. (2014) · Journal of Clinical Investigation · doi:10.1172/jci72723 · Cited by 284
Genome maintenance and transcription integrity in aging and disease
Wolters, S., & Schumacher, B. (2013) · Frontiers in Genetics · doi:10.3389/fgene.2013.00019 · Cited by 73
“Upon lesion detection the XPC–RAD23 and the DDB1–DDB2 complex recruit the same NER machinery as the TC-NER complex (Cleaver et al., 2009).”
BackgroundRole of DNA repair defects in predicting immunotherapy response
Zhang, J., Shih, D. J. H., & Lin, S. (2020) · Biomarker Research · doi:10.1186/s40364-020-00202-7 · Cited by 70
Cockayne syndrome group B (CSB) protein: At the crossroads of transcriptional networks
Vélez-Cruz, R., & Egly, J. (2013) · Mechanisms of Ageing and Development · doi:10.1016/j.mad.2013.03.004 · Cited by 74
Gilljam, K. M., Müller, R., Liabakk, N. B., & Otterlei, M. (2012) · PLoS ONE · doi:10.1371/journal.pone.0049199 · Cited by 69
“XP patients exhibit more than a 1,000-fold increase in the incidence of sun-induced skin cancer and an increased incidence of internal cancers, primarily in the lung or gastro-intestinal tract [6,7].”
Caffeine Promotes Ultraviolet B-induced Apoptosis in Human Keratinocytes without Complete DNA Repair
Han, W., Ming, M., & He, Y. (2011) · Journal of Biological Chemistry · doi:10.1074/jbc.m111.222349 · Cited by 69
Detecting UV‐lesions in the genome: The modular CRL4 ubiquitin ligase does it best!
Scrima, A., Fischer, E. S., Lingaraju, G. M., Böhm, K., Cavadini, S., & Thomä, N. H. (2011) · FEBS Letters · doi:10.1016/j.febslet.2011.04.064 · Cited by 66
“clude developmental defects, photosensitivity, segmental premature aging and mental retardation [3,77].”
BackgroundCleaver, J. E., Brennan-Minnella, A. M., Swanson, R. A., Fong, K.-W., Chen, J., Chou, K.-M., Chen, Y.-W., Revet, I., & Bezrookove, V. (2014) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1414135111 · Cited by 65
Self-citationDNA Damage and Repair in Atherosclerosis: Current Insights and Future Perspectives
Cervelli, T., Borghini, A., Galli, A., & Andreassi, M. G. (2012) · International Journal of Molecular Sciences · doi:10.3390/ijms131216929 · Cited by 66
When DNA-damage responses meet innate and adaptive immunity
Tong, J., Song, J., Zhang, W., Zhai, J., Guan, Q., Wang, H., Liu, G., & Zheng, C. (2024) · Cellular and Molecular Life Sciences · doi:10.1007/s00018-024-05214-2 · Cited by 66
“Two NER pathways have been identified in mammalian cells: global genomic repair (GGR) and transcription-coupled repair (TCR) [35].”
BackgroundThe deacetylase SIRT6 promotes the repair of UV-induced DNA damage by targeting DDB2
Geng, A., Tang, H., Huang, J., Qian, Z. Y., Qin, N., Yao, Y., Xu, Z., Chen, H., Lan, L., Xie, H., et al. (2020) · Nucleic Acids Research · doi:10.1093/nar/gkaa661 · Cited by 66
“Interestingly, Cockayne syndrome, which is caused by TC-NER defects, is mainly characterized by neurological or developmental disorders but not a heightened incidence of melanoma (4).”
BackgroundPaul, D., Mu, H., Zhao, H., Ouerfelli, O., Jeffrey, P. D., Broyde, S. B., & Min, J. (2019) · Nucleic Acids Research · doi:10.1093/nar/gkz359 · Cited by 63
“Impaired NER genes decrease cell survival after UV in yeast and other cell lines and can cause the xeroderma pigmentosum (XP) cancer predisposition syndrome in humans, marked by extreme sun sensitivity and >1000-fold higher risk of sunlight-induced skin cancers (1,15,16).”
BackgroundKim, J., Ryu, T. H., Lee, S. S., Lee, S., & Chung, B. Y. (2018) · Plant Science · doi:10.1016/j.plantsci.2018.10.013 · Cited by 73
Preclinical Corrective Gene Transfer in Xeroderma Pigmentosum Human Skin Stem Cells
Warrick, E., Garcia, M., Chagnoleau, C., Chevallier, O., Bergoglio, V., Sartori, D., Mavilio, F., Angulo, J. F., Avril, M.-F., Sarasin, A., et al. (2012) · Molecular Therapy · doi:10.1038/mt.2011.233 · Cited by 58
Puumalainen, M.-R., Rüthemann, P., Min, J., & Naegeli, H. (2015) · Cellular and Molecular Life Sciences · doi:10.1007/s00018-015-2075-z · Cited by 71
“These patients are classified into different genetic complementation groups (from XPA to XPG) caused by mutations in the respective seven NER genes [21].”
BackgroundJung, Y.-S., Qian, Y., & Chen, X. (2012) · DNA Repair · doi:10.1016/j.dnarep.2011.10.017 · Cited by 57
“XPV patients are highly sensitive to UV and have much greater risk of developing sun-induced skin cancer than hat of normal population [4–7].”
BackgroundRegenbogen, L. (2020) · Definitions · doi:10.1002/9781119013112.ch35 · Cited by 57
Impact of Age and Insulin-Like Growth Factor-1 on DNA Damage Responses in UV-Irradiated Human Skin
Kemp, M. G., Spandau, D. F., & Travers, J. B. (2017) · Molecules · doi:10.3390/molecules22030356 · Cited by 65
“Mutations in NER gene products give rise to both the disease xeroderma pigmentosum, which is characterized by a several thousand-fold increased risk of skin carcinogenesis, and to a neurodegenerative and premature aging disorder known as Cockayne syndrome [35,36].”
BackgroundPirh2 E3 Ubiquitin Ligase Monoubiquitinates DNA Polymerase Eta To Suppress Translesion DNA Synthesis
Jung, Y.-S., Hakem, A., Hakem, R., & Chen, X. (2011) · Molecular and Cellular Biology · doi:10.1128/mcb.05808-11 · Cited by 59
“Under these conditions, many organisms require the action of specialized translesion DNA polymerases that can bypass various DNA lesions (6, 8, 27).”
BackgroundWhy Cockayne syndrome patients do not get cancer despite their DNA repair deficiency
Reid-Bayliss, K. S., Arron, S. T., Loeb, L. A., Bezrookove, V., & Cleaver, J. E. (2016) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1610020113 · Cited by 55
“CS is mutated in the transcription-coupled repair (TCR) branch of the NER pathway and exhibits developmental and neurological pathologies.”
BackgroundInfluentialSelf-citationXiong, Y., Huang, B., & Yin, J. (2017) · Medical Oncology · doi:10.1007/s12032-017-0905-6 · Cited by 57
Cockayne Syndrome: The many challenges and approaches to understand a multifaceted disease
Vessoni, A. T., Guerra, C. C. C., Kajitani, G. S., Nascimento, L. L. S., & Garcia, C. C. M. (2020) · Genetics and Molecular Biology · doi:10.1590/1678-4685-gmb-2019-0085 · Cited by 57
“, 2008), and the detection of UV products is facilitated by XPE/DDB2 (Cleaver et al., 2009).”
Chatgilialoglu, C., Ferreri, C., Geacintov, N. E., Krokidis, M. G., Liu, Y., Masi, A., Shafirovich, V., Terzidis, M. A., & Tsegay, P. S. (2019) · Cells · doi:10.3390/cells8060513 · Cited by 59
“The skin is normal at birth, and with the onset of the disorder, all patients develop freckle-like pigmentary changes in sun-exposed areas, which eventually appear as poikiloderma [108,109].”
BackgroundSoltys, D. T., Rocha, C. R. R., Lerner, L. K., de Souza, T. A., Munford, V., Cabral, F., Nardo, T., Stefanini, M., Sarasin, A., Cabral‐Neto, J. B., et al. (2013) · Human Mutation · doi:10.1002/humu.22259 · Cited by 48
“The clinical hallmarks of XP are extreme photosensitivity, hyperpigmentation of the skin, xerosis, premature skin ageing, abnormal lentiginosis, and high incidence of tumors in the sun-exposed skin [Cleaver et al., 2009; Lehmann et al., 2011].”
BackgroundTRiC controls transcription resumption after UV damage by regulating Cockayne syndrome protein A
Pines, A., Dijk, M., Makowski, M. M., Meulenbroek, E. M., Vrouwe, M. G., van der Weegen, Y., Baltissen, M. P. A., French, P. J., van Royen, M. E., Luijsterburg, M. S., et al. (2018) · Nature Communications · doi:10.1038/s41467-018-03484-6 · Cited by 48
Gene Therapy for Skin DiseasesPreprint
Gorell, E. S., Nguyen, N. T., Lane, A. T., & Siprashvili, Z. (2014) · Cold Spring Harbor Perspectives in Medicine · doi:10.1101/cshperspect.a015149 · Cited by 56
“Current therapy is limited to surgical tumor resection and recommendations to avoid sunlight (Cleaver et al. 2009).”
BackgroundTranscription coupled repair at the interface between transcription elongation and mRNP biogenesis
Gaillard, H., & Aguilera, A. (2012) · Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms · doi:10.1016/j.bbagrm.2012.09.008 · Cited by 46
Gorgun, M. F., Zhuo, M., & Englander, E. W. (2016) · Molecular Neurobiology · doi:10.1007/s12035-016-0273-9 · Cited by 41
“Cisplatin crosslinks are repairable via the NER pathway that catalyzes removal of cisplatin crosslinks from nuclear DNA [69, 70].”
Park, J.-M., & Kang, T.-H. (2016) · International Journal of Molecular Sciences · doi:10.3390/ijms17111840 · Cited by 44
Slow accumulation of mutations in Xpc−/− mice upon induction of oxidative stress
Melis, J. P. M., Kuiper, R., Zwart, E. P., Robinson, J. E., Pennings, J., van Oostrom, C. V., Luijten, M., & van Steeg, H. (2013) · DNA Repair · doi:10.1016/j.dnarep.2013.08.019 · Cited by 44
“sub-pathways: global genome NER (GG-NER), which covers repair genome wide, and transcription coupled NER (TC-NER), which is responsible for repair of the transcribed strand of active genes [2,6].”
Whole-Exome Sequencing Enables Rapid Determination of Xeroderma Pigmentosum Molecular Etiology
Ortega‐Recalde, O., Vergara, J. I., Fonseca, D. J., Ríos, X. P., Mosquera, H., Bermúdez, O. M., Medina, C. L., Vargas, C. I., Pallares, A. E., Restrepo, C. M., et al. (2013) · PLoS ONE · doi:10.1371/journal.pone.0064692 · Cited by 39
TFIIH: A multi-subunit complex at the cross-roads of transcription and DNA repair
Kolesnikova, O., Radu, L., & Poterszman, A. (2019) · Advances in protein chemistry and structural biology · doi:10.1016/bs.apcsb.2019.01.003 · Cited by 50
Tesfaye, A. A., Kamgar, M., Azmi, A. S., & Philip, P. A. (2017) · Expert Review of Anticancer Therapy · doi:10.1080/14737140.2018.1417844 · Cited by 43
Autophagic UVRAG Promotes UV-Induced Photolesion Repair by Activation of the CRL4 DDB2 E3 Ligase
Yang, Y., He, S., Wang, Q., Li, F., Kwak, M., Chen, S., O’Connell, D., Zhang, T., Pirooz, S. D., Jeon, Y.-H., et al. (2016) · Molecular Cell · doi:10.1016/j.molcel.2016.04.014 · Cited by 50
“This UV-DDB-Cul4A-Roc1 complex (referred to as CRL4DDB2) catalyzes the ubiquitination of histones and/or recruits chromatin remodelers at the sites of UV lesions, ensuing lesion handover from UV-DDB to XPC (Cleaver et al., 2009; Duan and Smerdon, 2010).”
Jagirdar, K., Yin, K., Harrison, M., Lim, W., Muscat, G. E. O., Sturm, R. A., & Smith, A. G. (2013) · PLoS ONE · doi:10.1371/journal.pone.0078075 · Cited by 40
“Nucleotide excision repair (NER), like other DNA repair mechanisms, proceeds as a highly ordered sequential process involving the recruitment of an array of factors [5,6].”
BackgroundPremature Skin Aging Features Rescued by Inhibition of NADPH Oxidase Activity in XPC-Deficient Mice
Hosseini, M., Mahfouf, W., Serrano-Sanchez, M., Raad, H., Harfouche, G., Bonneu, M., Claverol, S., Mazurier, F., Rossignol, R., Taieb, A., et al. (2015) · Journal of Investigative Dermatology · doi:10.1038/jid.2014.511 · Cited by 42
“The absence or dysfunction of NER proteins results in one of the following distinct diseases: XP, TTD, and CS (Kraemer et al., 2007; Cleaver et al., 2009).”
InfluentialIn TFIIH the Arch domain of XPD is mechanistically essential for transcription and DNA repair
Peissert, S., Sauer, F., Grabarczyk, D. B., Braun, C., Sander, G., Poterszman, A., Egly, J., Kuper, J., & Kisker, C. (2020) · Nature Communications · doi:10.1038/s41467-020-15241-9 · Cited by 47
FACT subunit Spt16 controls UVSSA recruitment to lesion-stalled RNA Pol II and stimulates TC-NER
Wienholz, F., Zhou, D., der Velden, Y. T.-V., Schwertman, P., Tresini, M., Pines, A., van Toorn, M., Bezstarosti, K., Demmers, J., & Marteijn, J. A. F. (2019) · Nucleic Acids Research · doi:10.1093/nar/gkz055 · Cited by 44
“CS is caused by mutations in Cockayne Syndrome protein A (CSA) and Cockayne Syndrome protein B (CSB) (11,12), while mutations in UVSSA give rise to UVSS (13–15).”
BackgroundHan, W., Ming, M., Zhao, R., Pi, J., Wu, C., & He, Y. (2012) · Journal of Biological Chemistry · doi:10.1074/jbc.m112.363614 · Cited by 45
Edifizi, D., & Schumacher, B. (2015) · Biomolecules · doi:10.3390/biom5031855 · Cited by 45
Hunter, F. W., Wang, J., Patel, R., Hsu, H., Hickey, A. J., Hay, M. P., & Wilson, W. R. (2011) · Biochemical Pharmacology · doi:10.1016/j.bcp.2011.12.005 · Cited by 44
“UV4 and UV41 cells, which are deficient in NER (a pathway associated with several inherited cancer syndromes [55]), have been widely characterised as hypersensitive to bulky lesions including DNA cross-links [38], whereas EM9 cells are sensitive to single-strand breaks and base damage due to failure of DNA ligase III…”
Background
Metadata
- Authors
- Cleaver, J. E., Lam, E. T., & Revet, I.
- Affiliations
- University of California, San Francisco (US)
- Corresponding author
- Cleaver, James E.
- ORCID
- Cleaver, James E.
- Venue
- Nature Reviews Genetics
- Published
- 2009-10-07
- Volume
- 10
- Issue
- 11
- Pages
- 756-768
- ISSN
- 1471-0056 (ISSN-L)
- 1471-0064
- OpenAlex
- W2026776398
- Cited by
- 428
- References
- 0
- Citations by year
- 2026: 7 · 2025: 16 · 2024: 9 · 2023: 14 · 2022: 23 · 2021: 20 · 2020: 30 · 2019: 24 · 2018: 24 · 2017: 29 · 2016: 35 · 2015: 30 · 2014: 43 · 2013: 38 · 2012: 33
- FWCI
- 2.12
- Type
- journal article
- Language
- en
- Open access
- closed
- Locations
- Nature Reviews Genetics (publishedVersion)
- PubMed (publishedVersion)
- Funders
- Iris O'Brien Foundation
- National Institute of Neurological Disorders and Stroke (R01NS052781)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › DNA Repair Mechanisms
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Genomics and Rare Diseases
- Health Sciences › Medicine › Dermatology › Genetic and rare skin diseases.
- Keywords
- nucleotide excision repair, genetic heterogeneity, xeroderma pigmentosum, Cockayne syndrome, trichothiodystrophy, transcription arrest, DNA repair deficiency, skin cancer predisposition, neurological symptoms, developmental abnormalities, loss-of-function mutations, protein structure, genotype-phenotype correlation
- MeSH terms
- Animals, Cockayne Syndrome, DNA Repair, Humans, Genetic Variation, Xeroderma Pigmentosum, Trichothiodystrophy Syndromes
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