The DOI matches its Crossref record; 5 of the 5 references it cites were found in a registry or an index.
Efficient generation of mouse models of human diseases via ABE- and BE-mediated base editing
Open accessAbstract
A recently developed adenine base editor (ABE) efficiently converts A to G and is potentially useful for clinical applications. However, its precision and efficiency in vivo remains to be addressed. Here we achieve A-to-G conversion in vivo at frequencies up to 100% by microinjection of ABE mRNA together with sgRNAs. We then generate mouse models harboring clinically relevant mutations at Ar and Hoxd13, which recapitulates respective clinical defects. Furthermore, we achieve both C-to-T and A-to-G base editing by using a combination of ABE and SaBE3, thus creating mouse model harboring multiple mutations. We also demonstrate the specificity of ABE by deep sequencing and whole-genome sequencing (WGS). Taken together, ABE is highly efficient and precise in vivo, making it feasible to model and potentially cure relevant genetic diseases.
Overview
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Verification
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
Citations
Cites
Fast and accurate short read alignment with Burrows-Wheeler transform
Li, H., & Durbin, R. (2009) · Bioinformatics · doi:10.1093/bioinformatics/btp324 · Cited by 58,607
Programmable editing of a target base in genomic DNA without double-stranded DNA cleavage
Komor, A. C., Kim, Y. B., Packer, M. S., Zuris, J. A., & Liu, D. R. (2016) · Nature · doi:10.1038/nature17946 · Cited by 5,437
Programmable base editing of A•T to G•C in genomic DNA without DNA cleavage
Gaudelli, N. M., Komor, A. C., Rees, H. A., Packer, M. S., Badran, A. H., Bryson, D. I., & Liu, D. R. (2017) · Nature · doi:10.1038/nature24644 · Cited by 4,184
ClinVar: public archive of interpretations of clinically relevant variants
Landrum, M. J., Lee, J. M., Benson, M., Brown, G., Chao, C., Chitipiralla, S., Gu, B., Hart, J., Hoffman, D., Hoover, J., et al. (2016) · Nucleic Acids Research · doi:10.1093/nar/gkv1222 · Cited by 2,758
Somatic mosaicism and allele complexity induced by CRISPR/Cas9 RNA injections in mouse zygotes
Yen, S.-T., Zhang, M., Deng, J. M., Usman, S. J., Smith, C. N., Parker-Thornburg, J., Swinton, P. G., Martin, J. F., & Behringer, R. R. (2014) · Developmental Biology · doi:10.1016/j.ydbio.2014.06.017 · Cited by 300
Cited by
Genome editing with CRISPR–Cas nucleases, base editors, transposases and prime editors
Anzalone, A. V., Koblan, L. W., & Liu, D. R. (2020) · Nature Biotechnology · doi:10.1038/s41587-020-0561-9 · Cited by 2,237
Artificial intelligence: A powerful paradigm for scientific research
Xu, Y., Liu, X., Cao, X., Huang, C., Liu, E., Qian, S., Liu, X., Wu, Y., Dong, F., Qiu, C.-W., et al. (2021) · The Innovation · doi:10.1016/j.xinn.2021.100179 · Cited by 1,726
Self-citationBase editing: precision chemistry on the genome and transcriptome of living cells
Rees, H. A., & Liu, D. R. (2018) · Nature Reviews Genetics · doi:10.1038/s41576-018-0059-1 · Cited by 1,675
Plant- or microbial-derived? A review on the molecular composition of stabilized soil organic matter
Angst, G., Mueller, K. E., Nierop, K. G. J., & Simpson, M. J. (2021) · Soil Biology and Biochemistry · doi:10.1016/j.soilbio.2021.108189 · Cited by 1,196
Richter, M. F., Zhao, K. T., Eton, E., Lapinaite, A., Newby, G. A., Thuronyi, B. W., Wilson, C., Koblan, L. W., Zeng, J., Bauer, D. E., et al. (2020) · Nature Biotechnology · doi:10.1038/s41587-020-0453-z · Cited by 1,020
The gut microbiota in anxiety and depression—A systematic review
Simpson, C. A., Diaz-Arteche, C., Eliby, D., Schwartz, O. S., Simmons, J. G., & Cowan, C. S. M. (2021) · Clinical Psychology Review · doi:10.1016/j.cpr.2020.101943 · Cited by 912
The default mode network: where the idiosyncratic self meets the shared social world
Yeshurun, Y., Nguyen, M., & Hasson, U. (2021) · Nature Reviews Neuroscience · doi:10.1038/s41583-020-00420-w · Cited by 682
Recent advances in wet adhesives: Adhesion mechanism, design principle and applications
Cui, C., & Liu, W. (2021) · Progress in Polymer Science · doi:10.1016/j.progpolymsci.2021.101388 · Cited by 557
Yang, Y., Liang, Y., Chen, J., Duan, X., & Guo, B. (2022) · Bioactive Materials · doi:10.1016/j.bioactmat.2021.06.014 · Cited by 548
Self-citationAPOE and Alzheimer’s Disease: From Lipid Transport to Physiopathology and Therapeutics
Husain, M. A., Laurent, B., & Plourde, M. (2021) · Frontiers in Neuroscience · doi:10.3389/fnins.2021.630502 · Cited by 353
Webber, B. R., Lonetree, C.-L., Kluesner, M. G., Johnson, M. J., Pomeroy, E. J., Diers, M. D., Lahr, W. S., Draper, G. M., Slipek, N. J., Smeester, B. A., et al. (2019) · Nature Communications · doi:10.1038/s41467-019-13007-6 · Cited by 232
Engineering a precise adenine base editor with minimal bystander editing
Chen, L., Zhang, S., Xue, N., Hong, M., Zhang, X., Zhang, D., Yang, J., Bai, S., Huang, Y., Meng, H., et al. (2023) · Nature Chemical Biology · doi:10.1038/s41589-022-01163-8 · Cited by 202
Hasegawa, T., & Nakaoka, M. (2021) · Environmental Pollution · doi:10.1016/j.envpol.2021.116468 · Cited by 176
Precision genome editing using cytosine and adenine base editors in mammalian cells
Huang, T. P., Newby, G. A., & Liu, D. R. (2021) · Nature Protocols · doi:10.1038/s41596-020-00450-9 · Cited by 175
Separation and identification of nanoplastics in tap water
Li, Y., Wang, Z., & Guan, B. (2022) · Environmental Research · doi:10.1016/j.envres.2021.112134 · Cited by 156
Genome-wide profiling of adenine base editor specificity by EndoV-seq
Liang, P., Xie, X., Zhi, S., Sun, H., Zhang, X., Chen, Y., Chen, Y., Xiong, Y., Ma, W., Liu, D., et al. (2019) · Nature Communications · doi:10.1038/s41467-018-07988-z · Cited by 148
Neurovascular coupling and bilateral connectivity during nrem and rem sleep
Turner, K. L., Gheres, K. W., Proctor, E. A., & Drew, P. J. (2020) · eLife · doi:10.7554/elife.62071 · Cited by 130
Simplified adenine base editors improve adenine base editing efficiency in rice
Hua, K., Tao, X., Liang, W., Zhang, Z., Gou, R., & Zhu, J. (2020) · Plant Biotechnology Journal · doi:10.1111/pbi.13244 · Cited by 108
Cyrius: accurate CYP2D6 genotyping using whole-genome sequencing data
Chen, X., Shen, F., Gonzaludo, N., Malhotra, A., Rogert, C., Taft, R. J., Bentley, D. R., & Eberle, M. A. (2021) · The Pharmacogenomics Journal · doi:10.1038/s41397-020-00205-5 · Cited by 95
Gao, Z., Zhang, H., Mao, G., Ren, J., Chen, Z., Wu, C., Gates, I. D., Yang, W., Ding, X., & Yao, J. (2021) · Applied Surface Science · doi:10.1016/j.apsusc.2021.150916 · Cited by 101
Harnessing and Enhancing Macrophage Phagocytosis for Cancer Therapy
Chen, S., Lai, S. W. T., Brown, C. E., & Feng, M. (2021) · Frontiers in Immunology · doi:10.3389/fimmu.2021.635173 · Cited by 91
Clinical therapies and nano drug delivery systems for urinary bladder cancer
Jain, P., Kathuria, H., & Momin, M. (2021) · Pharmacology & Therapeutics · doi:10.1016/j.pharmthera.2021.107871 · Cited by 89
Base Editing in Plants: Applications, Challenges, and Future Prospects
Azameti, M. K., & Dauda, W. P. (2021) · Frontiers in Plant Science · doi:10.3389/fpls.2021.664997 · Cited by 88
New Loci and Neuronal Pathways for Resilience to Heat Stress in Cattle
Cheruiyot, E. K., Haile-Mariam, M., Cocks, B. G., MacLeod, I. M., Xiang, R., & Pryce, J. E. (2021) · Scientific Reports · doi:10.1038/s41598-021-95816-8 · Cited by 81
The Beauty of Biocatalysis: Sustainable Synthesis of Ingredients in Cosmetics
Heath, R. S., Ruscoe, R. E., & Turner, N. J. (2022) · Natural Product Reports · doi:10.1039/d1np00027f · Cited by 65
Advances in Genome Editing and Application to the Generation of Genetically Modified Rat Models
Chenouard, V., Remy, S., Tesson, L., Ménoret, S., Ouisse, L.-H., Cherifi, Y., & Anegon, I. (2021) · Frontiers in Genetics · doi:10.3389/fgene.2021.615491 · Cited by 57
She, C., Huang, Q., Chen, C., Jiang, Y., Fan, Z., & Gao, J. (2021) · Journal of Materials Chemistry A · doi:10.1039/d1ta08194b · Cited by 59
Recent progress on peripheral neural interface technology towards bioelectronic medicine
Cho, Y., Park, J., Lee, C., & Lee, S. (2020) · Bioelectronic Medicine · doi:10.1186/s42234-020-00059-z · Cited by 55
Integrative Structural Biology in the Era of Accurate Structure Prediction
Masrati, G., Landau, M., Ben-Tal, N., Lupas, A., Kosloff, M., & Kosinski, J. (2021) · Journal of Molecular Biology · doi:10.1016/j.jmb.2021.167127 · Cited by 53
ApoE4 attenuates autophagy via FoxO3a repression in the brain
Sohn, H.-Y., Kim, S.-I., Park, J.-Y., Park, S.-H., Koh, Y. H., Kim, J., & Jo, C. (2021) · Scientific Reports · doi:10.1038/s41598-021-97117-6 · Cited by 54
Early predictors of conversion to secondary progressive multiple sclerosis
Barzegar, M., Najdaghi, S., Afshari-Safavi, A., Nehzat, N., Mirmosayyeb, O., & Shaygannejad, V. (2021) · Multiple Sclerosis and Related Disorders · doi:10.1016/j.msard.2021.103115 · Cited by 52
A CRISPR way for accelerating cereal crop improvement: Progress and challenges
Basu, U., Riaz Ahmed, S., Bhat, B. A., Anwar, Z., Ali, A., Ijaz, A., Gulzar, A., Bibi, A., Tyagi, A., Nebapure, S. M., et al. (2023) · Frontiers in Genetics · doi:10.3389/fgene.2022.866976 · Cited by 51
Compartmentalization of Photoreceptor Sensory Cilia
Barnes, C. L., Malhotra, H., & Calvert, P. D. (2021) · Frontiers in Cell and Developmental Biology · doi:10.3389/fcell.2021.636737 · Cited by 44
A Mixed Culture of Bacterial Cells Enables an Economic DNA Storage on a Large Scale
Hao, M., Qiao, H., Gao, Y., Wang, Z., Qiao, X., Chen, X., & Qi, H. (2020) · Communications Biology · doi:10.1038/s42003-020-01141-7 · Cited by 41
Jackson, H. O., Taunt, H. N., Mordaka, P. M., Smith, A. G., & Purton, S. (2021) · Frontiers in Plant Science · doi:10.3389/fpls.2021.708370 · Cited by 37
Yu, H., & Welch, J. D. (2021) · Genome Biology · doi:10.1186/s13059-021-02373-4 · Cited by 38
Development of multiplexed orthogonal base editor (MOBE) systems
Cowan, Q. T., Gu, S., Gu, W., Ranzau, B. L., Simonson, T. S., & Komor, A. C. (2025) · Nature Biotechnology · doi:10.1038/s41587-024-02240-0 · Cited by 26
Zhang, X., Li, X., Pan, Z., Lai, Y., Lu, Y., Wang, Y., & Song, S. (2021) · Chemical Engineering Journal · doi:10.1016/j.cej.2021.131524 · Cited by 26
Xu, Z., Wu, C., Zhu, Y., Ju, S., Ma, F., Guo, T., Li, F., & Kim, T. W. (2021) · Nanoscale · doi:10.1039/d0nr06550a · Cited by 26
Birattari, M., Ligot, A., & Francesca, G. (2021) · Natural Computing Series · doi:10.1007/978-3-030-72069-8_5 · Cited by 22
Anonymization of Daily Activity Data by Using ℓ-diversity Privacy Model
Parameshwarappa, P., Chen, Z., & Koru, G. (2021) · ACM Transactions on Management Information Systems · doi:10.1145/3456876 · Cited by 19
A socialbots analysis-driven graph-based approach for identifying coordinated campaigns in twitter
Fazil, M., & Abulaish, M. (2020) · Journal of Intelligent & Fuzzy Systems · doi:10.3233/jifs-182895 · Cited by 14
He, T., He, Y., Li, H., Yin, X., Zhou, L., Shi, H., Ma, J., & Chen, L. (2022) · Journal of Electroanalytical Chemistry · doi:10.1016/j.jelechem.2021.115829 · Cited by 13
Got mutation? ‘Base editors’ fix genomes one nucleotide at a time.
Ravindran, S. (2019) · Nature · doi:10.1038/d41586-019-03536-x · Cited by 12
Na-k liquid alloy: A review on wettability enhancement and ionic carrier selection mechanism
Li, X., Liu, J., Chen, C., Yang, J., Xu, Z., Wu, M., Wang, Y., & Karim, Z. (2021) · Chinese Chemical Letters · doi:10.1016/j.cclet.2020.09.018 · Cited by 12
CRISPR-mediated base editing in mice using cytosine deaminase base editor 4
Adlat, S., Hayel, F., Yang, P., Chen, Y., Oo, Z. M., Myint, M. Z. Z., Sah, R. K., Bahadar, N., Al-Azab, M., Bah, F. B., et al. (2021) · Electronic Journal of Biotechnology · doi:10.1016/j.ejbt.2021.04.010 · Cited by 3
Metadata
- Authors
- Liu, Z., Lu, Z., Yang, G., Huang, S., Li, G., Feng, S., Liu, Y., Li, J., Yu, W., Zhang, Y., Chen, J., Sun, Q., & Huang, X.
- Venue
- Nature Communications
- Published
- 2018-06-14
- Volume
- 9
- Issue
- 1
- Pages
- 2338-2338
- ISSN
- 2041-1723 (ISSN-L)
- OpenAlex
- W2805837749
- Cited by
- 2,074
- References
- 5
- FWCI
- 158.36
- Type
- journal article
- Language
- en
- Open access
- gold
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review
Data sources
Bibliographic data: Semantic Scholar, OpenAlex, Crossref.
Contains information from the Semantic Scholar Academic Graph Datasets, made available under the ODC Attribution License (ODC-BY 1.0).
Semantic Scholar’s data is described in: Kinney, R., et al. (2023). The Semantic Scholar Open Data Platform. arXiv:2301.10140.