Gut microbiome-mediated metabolism effects on immunity in rural and urban African populations

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Multi-omics of the gut microbial ecosystem in patients with microsatellite-instability-high gastrointestinal cancer resistant to immunotherapy

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Western diet influences on microbiome and carcinogenesis

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Effectiveness of probiotic/prebiotic/synbiotic treatments on anxiety: A systematic review and meta-analysis of randomized controlled trials

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Helicobacter pylori and the intestinal microbiome among healthy school‐age children

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Long-term simulated microgravity alters gut microbiota and metabolome in mice

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Beneficial effect of vinegar consumption associated with regulating gut microbiome and metabolome

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Intestinal microbiota research from a global perspective

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Gut microbial genomes with paired isolates from China illustrate probiotic and cardiometabolic effects

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Resistance Mechanisms to Combined CDK4/6 Inhibitors and Endocrine Therapy in ER+/HER2− Advanced Breast Cancer: Biomarkers and Potential Novel Treatment Strategies

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Gut Microbial Succession Patterns and Metabolic Profiling during Pregnancy and Lactation in a Goat Model

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Differential effects of antiretroviral treatment on immunity and gut microbiome composition in people living with HIV in rural versus urban Zimbabwe

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Lactobacillus- derived protoporphyrin IX and SCFAs regulate the fiber size via glucose metabolism in the skeletal muscle of chickens

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The impact of mold exposure on anxiety symptoms in the older adults: A moderated mediation model based on CLHLS

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Associations between Gut Microbiota and Intestinal Inflammation, Permeability and Damage in Young Malawian Children

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Integrated multi-omics reveals novel microbe-host lipid metabolism and immune interactions in the donkey hindgut

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The kynurenine pathway regulated by intestinal innate lymphoid cells mediates postoperative cognitive dysfunction

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The impact of metabolic reprogramming on tertiary lymphoid structure formation: enhancing cancer immunotherapy

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Functional modulation of the human gut microbiome by bacteria vehicled by cheese

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Environmental factors influence yak milk composition by modulating short-chain fatty acid metabolism in intestinal microorganisms

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Effects of modified-BHI medium on the growth and metabolites of Akkermansia muciniphila

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Normal Gut Microbiomes in Diverse Populations: Clinical Implications

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Change in the Gut Microbiome and Immunity by Lacticaseibacillusrhamnosus Probio-M9

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The gut-liver nexus: exploring gut microbiota dysbiosis in non-alcoholic fatty liver disease and its therapeutic implications

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Bifidobacterium adolescentis PRL2019 in Pediatric Irritable Bowel Syndrome: A Multicentric, Randomized, Double-Blind, Placebo-Controlled Trial

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Diet’s impact on gut microbial assemblage in health and disease

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Role of oxidative stress, gut microbiota and derived metabolites in the etiology and progression of nonalcoholic fatty liver disease

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Taeniasis impacts human gut microbiome composition and function

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Reduced butyrate-producing bacteria and altered metabolic pathways in the gut microbiome of immunoglobulin A nephropathy patients

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Exopolysaccharide secreted by Lactiplantibacillus plantarum Y12 showed inhibitory effect on the pathogenicity of Shigella flexneri in vitro and in vivo

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Dysbiosis of the Gut Microbiota in Patients with Psoriatic Arthritis is Closely Related to Lymphocyte Subsets and Cytokines

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Gut mycobiome maturation and its determinants during early childhood: a comparison of ITS2 amplicon and shotgun metagenomic sequencing approaches

Heisel, T. J., Gonia, S., Dillon, A., Hoops, S., Al‐Ghalith, G. A., Gohl, D. M., Mukhopadhyay, S., Puopolo, K. M., Kennedy, P. G., Sadowsky, M. J., et al. (2025) · Frontiers in Microbiology · doi:10.3389/fmicb.2025.1539750 · Cited by 7 · see citing works

Gut Bacterial Communities Vary across Habitats and Their Diversity Increases with Increasing Glucocorticoids in Toad Tadpoles

Gabor, C. R., Villatoro‐Castañeda, M., Carlos‐Shanley, C., Ujhegyi, N., & Bókony, V. (2022) · Diversity · doi:10.3390/d15010023 · Cited by 7 · see citing works

Overview of microbial therapeutics in immunological disorders

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Sex differences and individual variability in the captive Jamaican fruit bat (Artibeus jamaicensis) intestinal microbiome and metabolome

Riopelle, J. C., Shamsaddini, A., Holbrook, M. G., Bohrnsen, E., Zhang, Y., Lovaglio, J., Cordova, K., Hanley, P. W., Kendall, L. V., Bosio, C. M., et al. (2024) · Scientific Reports · doi:10.1038/s41598-024-53645-5 · Cited by 7 · see citing works

Integrated microbiome and metabolome analysis reveals that new insight into Radix pseudostellariae polysaccharide enhances PRRSV inactivated vaccine

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Multi-omics analysis of the effects of dietary changes and probiotics on diet-induced obesity

Jiang, S., Su, Y., Wang, Q., Lv, L., Xue, C., Xu, L., & Li, L. (2023) · Current Research in Food Science · doi:10.1016/j.crfs.2023.100435 · Cited by 7 · see citing works

Gut microbiota profiles of peninsular Malaysian populations are associated with urbanization and lifestyle

Jamaluddin, N. F., Brovkina, O., Rashid, N. N., Al‐Maleki, A. R., Lim, Y. A. L., Tan, M. P., Lee, S. C., Duvallet, C., Corzett, C. H., Alm, E. J., et al. (2025) · Scientific Reports · doi:10.1038/s41598-025-07117-z · Cited by 6 · see citing works

The effect of developmental stages on microbiome assembly in the phyllosphere and rhizosphere of rice grown in urban area soil

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Genetic and nongenetic drivers of platelet reactivity in healthy Tanzanian individuals

Kullaya, V. I., Temba, G. S., Vadaq, N., Njau, J., Boahen, C. K., Nkambule, B. B., Thibord, F., Chen, M., Pecht, T., Lyamuya, F. S., et al. (2023) · Journal of Thrombosis and Haemostasis · doi:10.1016/j.jtha.2023.11.014 · Cited by 6 · see citing works

Gut microbiota shift in Ghanaian individuals along the migration axis: the RODAM-Pros cohort

Verhaar, B. J. H., van der Linden, E. L., Hayfron-Benjamin, C. F., Owusu‐Dabo, E., Darko, S. N., Twumasi-Ankrah, S., Henneman, P., Beune, E., Meeks, K. A. C., Nieuwdorp, M., et al. (2025) · Gut Microbes · doi:10.1080/19490976.2025.2471960 · Cited by 7 · see citing works

First insight into the practical dietary application of Torula yeast single cell protein in gilthead sea bream

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Human immunodeficiency virus and antiretroviral therapies exert distinct influences across diverse gut microbiomes

Jabbar, K. S., Priya, S., Xu, J., Adhikari, U. D., Pishchany, G., Mohamed, A. M., Johansen, J., Thurimella, K., Aubin, C., Vlamakis, H. C., et al. (2025) · Nature Microbiology · doi:10.1038/s41564-025-02157-7 · Cited by 5 · see citing works

SARS-CoV-2 Seroprevalence in People Referred to Private Medical Laboratories in Different Districts of Tehran, Iran from May 2020 to April 2021

Heydarifard, Z., Zadheidar, S., Yavarian, J., Kalantari, S., Nejati, A., Mokhtari‐Azad, T., & Shafiei-Jandaghi, N.-Z. (2021) · Virologica Sinica · doi:10.1007/s12250-021-00446-z · Cited by 5 · see citing works

Randomized study of Lacticaseibacillus fermented milk in Indonesian elderly houses: Impact on gut microbiota and gut environment

Sujaya, I. N., Mariyatun, M., Hasan, P. N., Manurung, N. E. P., Pramesi, P. C., Juffrie, M., Utami, T., Cahyanto, M. N., Yamamoto, S., Takahashi, T., et al. (2025) · World Journal of Gastroenterology · doi:10.3748/wjg.v31.i12.104081 · Cited by 4 · see citing works

Tanzanian gut microbiota profiles linked to high but rapidly waning yellow fever antibody titers

Pyuza, J. J., van Dorst, M. M. A. R., Barnett, D. J. M., Stam, K. A., Manurung, M. D., Wammes, L. J., König, M. H., Kruize, Y. C. M., Andongolile, N., Ngowi, A., et al. (2025) · npj Biofilms and Microbiomes · doi:10.1038/s41522-025-00687-w · Cited by 5 · see citing works

Essential Fatty Acids along the Women’s Life Cycle and Promotion of a Well-balanced Metabolism

Marchiori, G. N., Eynard, A. R., & Soria, E. A. (2023) · Current Women s Health Reviews · doi:10.2174/0115734048247312230929092327 · Cited by 4 · see citing works

Urban Allergic Diseases Are Exacerbated by Adverse Environmental Factors

Shi, J., Zhang, R., Zhang, L., Wang, Y., Xu, Y. J., Wang, Y., Raghavan, V., & Wang, J. (2025) · Environmental Science & Technology · doi:10.1021/acs.est.5c09233 · Cited by 4 · see citing works

From tradition to transition: a narrative review on the role of heritage diets in mitigating nutrition-related non-communicable diseases in Tanzania

Kisali, E. P., Kavishe, R. A., Mosha, M., van den Berg, M. G. A., Netea, M. G., de Mast, Q., & Temba, G. S. (2025) · Nutrition Research Reviews · doi:10.1017/s095442242510022x · Cited by 3 · see citing works

Optimization of response surface methodology for the extraction of isoliquiritigenin from Aspergillus niger solid-state fermentation of licorice and its antitumor effects

Hao, J., Li, Q., Dong, N., Zhou, Y. M., Sun, Y., Pei, Y., Zhou, X., & Yang, L. (2025) · Frontiers in Pharmacology · doi:10.3389/fphar.2025.1629167 · Cited by 3 · see citing works

Double-Edged Sword: Urbanization and Response of Amniote Gut Microbiome in the Anthropocene

Peng, Y., Huang, M., Sun, X., Ling, W., Hao, X., Huang, G., Wu, X., Chen, Z., & Tang, X. (2025) · Microorganisms · doi:10.3390/microorganisms13081736 · Cited by 4 · see citing works

Gut microbiome mediates the associations between lifestyle factors and risk of colorectal high-risk adenoma: results from a population-based cohort study

Song, K., Luo, J., Zhang, Y., Wu, D., Chen, H., & Dai, M. (2025) · mSystems · doi:10.1128/msystems.00933-25 · Cited by 2 · see citing works

The African gut microbiome: A window into the hidden human microbial diversity

Zeng, S., Wang, H., Mu, D., & Wang, S. (2025) · Cell Host & Microbe · doi:10.1016/j.chom.2025.02.015 · Cited by 2 · see citing works

Natural environmental factors at birth on risk for rheumatoid arthritis: the impact of season, temperature, latitude, and sunlight exposure

Luo, L., Hee, J. Y., Zang, S., Liu, Z., Tang, K., Zhang, X., & Li, C. (2025) · BMC Public Health · doi:10.1186/s12889-025-22448-2 · Cited by 2 · see citing works

Aspartate Is A Determinant of TNF‐α Biogenesis in Sub‐Saharan Africa: Insight Into the Pathogenesis of Noncommunicable Diseases

Bickler, S. W., Cauvi, D. M., Gilbert, J. A., Ignacio, R. C., Ameh, E. A., Schooley, R. T., & Noormahomed, E. V. (2025) · The FASEB Journal · doi:10.1096/fj.202500738r · Cited by 1 · see citing works

Mucosal DNA and RNA virome alterations and their interactions with human RNA and microRNA transcriptomes in colorectal polyps

So, S. H. S., Jiang, W., Li, Y., Hold, G. L., Goodrick, K., Min, A., Bourke, M. J., El-Omar, E. M., Jiang, X., & Yim, H. C. H. (2025) · eGastroenterology · doi:10.1136/egastro-2025-100194 · Cited by 1 · see citing works

From sporulation to village differentiation: The shaping of the social microbiome over rural-to-urban lifestyle transition in Indonesia

Febinia, C. A., Luqman, H., Kusuma, P., Priliani, L., Lewis, J., Wihandani, D. M., Pinatih, G. N. I., Sudoyo, H., Almeida, A., Malik, S. G., et al. (2025) · Cell Reports · doi:10.1016/j.celrep.2025.116573 · Cited by 1 · see citing works

Characterization of gut microbiomes in rural Honduras reveals uncharacterized species and associations with human genetic variation

Beghini, F., Brito, I., Gerstein, M., & Christakis, N. A. (2025) · Cell Reports · doi:10.1016/j.celrep.2025.116724 · Cited by 1 · see citing works

Harnessing the power of breast milk: how Lactiplantibacillus plantarum FN029 from rural western China mitigates severe atopic dermatitis in mice through retinol metabolism activation

Hu, P., Sun, J., Gao, R., Li, K., Liu, J., Pan, X. F., Jin, Z., Mao, Y., Yang, J., Yu, R., et al. (2025) · Food & Function · doi:10.1039/d4fo04300f · Cited by 1 · see citing works

Enhanced tameness by Limosilactobacillus reuteri from gut microbiota of selectively bred micePreprint

Biswa, B. B., Mori, H., Toyoda, A., Kurokawa, K., & Koide, T. (2024) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2024.03.11.584526 · Cited by 1 · see citing works

Limosilactobacillus fermentum ATG-V5 stimulates the immune response by enhancing gut microbiome and metabolite in a cyclophosphamide-induced immunosuppression mouse modelPreprint

Park, A., Park, Y.-H., Kang, Y., Park, J., Park, G.-S., Ju, Y.-H., Hwang, W., & Kang, J. L. (2024) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2024.04.25.591046 · Cited by 1 · see citing works

Mass cytometry data integration methods reveal rural-urban gradient of immune profiles across geographyPreprint

Stam, K. A., Pyuza, J. J., Manurung, M. D., Tahapary, D. L., Supali, T., van Dorst, M. M. A. R., Mahfouz, A. E., Charrout, M., Jochems, S. P., Huisman, W., et al. (2025) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2025.09.05.673697 · Cited by 1 · see citing works

Genome-scale insights into the metabolic landscape and evolutionary development of Bifidobacterium bifidum

Selleri, E., Longhi, G., Tarracchini, C., Carolis, E. D., Petraro, S., Mancabelli, L., Milani, C., Turroni, F., Ventura, M., & Lugli, G. A. (2026) · Microbiome Research Reports · doi:10.20517/mrr.2026.19

Multi-omics of the gut microbial ecosystem in the immunotherapy resistance in microsatellite instability-high gastrointestinal cancer patientsPreprint

Cheng, S., Han, Z., Yin, X., Dai, D., Li, F., Zhang, X., Lu, M., Lü, Z., Wang, X., Zhou, J. W., et al. (2023) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2023.03.07.531467

Gut microbial genomes with paired isolates from China signify probiotic and cardiometabolic effectsPreprint

Huang, P., Dong, Q., Wang, Y., Tian, Y., Wang, S., Zhang, C., Yu, L., Tian, F., Gao, X., Guo, H., et al. (2023) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2023.09.25.559444

Immune, metabolic, and microbial aspects of human health and aging

Andreu‐Sánchez, S. (2024) · doi:10.33612/diss.1012187248

The Study of the COVID-19 Virus: A Review

Forsythe, M. L. (2024) · The Open COVID Journal · doi:10.2174/0126669587296962240521114748

Urbanisation and Globalisation

Ramanathan, J. (2025) · Springer eBooks · doi:10.1007/978-3-031-80029-0_4

Rural–urban environmental differences shape gut microbiome and metabolome signatures linked to cardiovascular disease risk in sub-Saharan AfricaPreprint

Walusimbi, B., Lawson, M. A., Bancroft, A. J., Nassuuna, J., Trivedi, D. K., Taylor, G., Sanya, R. E., Webb, E. L., Elliott, A. M., Kateete, D. P., et al. (2025) · Research Square · doi:10.21203/rs.3.rs-7108139/v1

Additional file 1 of Differential effects of antiretroviral treatment on immunity and gut microbiome composition in people living with HIV in rural versus urban Zimbabwe

Colorado, A. S. B., Lazzaro, A., Neff, C. P., Nusbacher, N. M., Boyd, K., Fiorillo, S. P., Martin, C. G., Siebert, J., Campbell, T., Borok, M. Z., et al. (2024) · Figshare · doi:10.6084/m9.figshare.26676563

Changes of intestinal microbiota and metabolites in Huso dauricus under heat stress and their potential relationship with heat stress resistance

Wang, R., Li, Y., He, Z., Sun, B., Zhang, Y., Wang, S., Ma, B., Cao, D., Sun, Z., Wang, N., et al. (2026) · Aquaculture Reports · doi:10.1016/j.aqrep.2026.103439

Global-scale microbiome analyses identify an ancestral gut cyanobacterial lineage enriched in African populationsPreprint

Murai, K., Suzuki, Y., & Nishijima, S. (2026) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.64898/2026.04.24.720558

Research trends on autoimmune liver diseases and gut microbiota (1989–2025): a bibliometric and visualization analysis based on the web of science core collection database

Wan, Y., Zheng, M., Fu, W., Zhu, H., Li, Y., Lin, H., Chen, J., Li, J., Mo, Q., Tai, W., et al. (2026) · Frontiers in Immunology · doi:10.3389/fimmu.2026.1785064

A Hadza-enriched Prevotella/Segatella xyloglucanase shows sequence conservation and functional specialization

Jespersen, M. L., Munk, K. K., Fjermedal, S., Pilgaard, B., Meyer, A. S., Aarestrup, F. M., & Otani, S. (2026) · Gut Microbes Reports · doi:10.1080/29933935.2026.2673265

Circulating metabolites associated with protection against Mycobacterium tuberculosis infection and inhibition of mycobacterial growth

Setiabudiawan, T. P., Apriani, L., Ávila-Pacheco, J., Ardiansyah, E., Kumar, V., Alisjahbana, B., Verrall, A. J., DiNardo, A. R., Indrati, A. R., Mourits, V. P., et al. (2026) · Communications Biology · doi:10.1038/s42003-026-10241-9

The skin-immune-gut Axis: How intralesional wart implantation may alleviate functional constipation via systemic Th1 activation and gut microbiota Remodeling

Wang, T., Li, Y., Wang, K., Zhang, X., Qin, M., & Pang, M. (2026) · Medical Hypotheses · doi:10.1016/j.mehy.2026.112047

Increased abundance of Limosilactobacillus reuteri in the gut of selectively bred high-tameness mice and its association with behavioural changes

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Gut microbial arginine biosynthesis mediates the anti-obesity effect of a pasteurized Akkermansia muciniphila 11Preprint

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Reference Incompleteness in Human Gut Metagenomics Is a Geographically Structured Measurement Bias

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Host Transcriptional Responses To Gut Microbiome Variation Arising From UrbanismPreprint

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Biogeography of the Relationship between the Child Gut Microbiome and Innate Immune System

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Tanzanian gut microbiota profiles linked to high but rapidly waning yellow fever antibody titers

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Early-life immunological and microbial differences between East African and North European children

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Diet, environments, and gut microbiota. A preliminary investigation in children living in rural and urban Burkina Faso and Italy

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