Burden and characteristics of COVID-19 in the United States during 2020

Early transmission dynamics in Wuhan, China, of novel coronavirus-infected pneumonia

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Dexamethasone in Hospitalized Patients with Covid-19

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An interactive web-based dashboard to track COVID-19 in real time

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Remdesivir for the Treatment of Covid-19 — Final Report

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First case of 2019 novel coronavirus in the United States

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Nowcasting and forecasting the potential domestic and international spread of the 2019-nCoV outbreak originating in Wuhan, China: a modelling study

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Substantial undocumented infection facilitates the rapid dissemination of novel coronavirus (SARS-CoV-2)

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Prevalence of Asymptomatic SARS-CoV-2 Infection

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Presymptomatic SARS-CoV-2 Infections and Transmission in a Skilled Nursing Facility

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Age-specific mortality and immunity patterns of SARS-CoV-2

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ESTIMATING PREVALENCE FROM THE RESULTS OF A SCREENING TEST

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Preexisting and de novo humoral immunity to SARS-CoV-2 in humans

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Genomic evidence for reinfection with SARS-CoV-2: a case study

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Coronavirus Disease 2019 (COVID-19) Re-infection by a Phylogenetically Distinct Severe Acute Respiratory Syndrome Coronavirus 2 Strain Confirmed by Whole Genome Sequencing

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Seroprevalence of antibodies to SARS-CoV-2 in 10 sites in the United States, March 23–May 12, 2020

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Effects of Vertical Wind Shear on the Intensity and Structure of Numerically Simulated Hurricanes

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Three-quarters attack rate of SARS-CoV-2 in the Brazilian Amazon during a largely unmitigated epidemic

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A systematic review and meta-analysis of published research data on COVID-19 infection fatality rates

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Forecasting seasonal outbreaks of influenza

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Differential effects of intervention timing on COVID-19 spread in the United States

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Estimated SARS-CoV-2 Seroprevalence in the US as of September 2020

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Trends in COVID-19 risk-adjusted mortality rates

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Estimating the infection-fatality risk of SARS-CoV-2 in New York City during the spring 2020 pandemic wave: a model-based analysis

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Forecasting the spatial transmission of influenza in the United States

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Estimated Incidence of Coronavirus Disease 2019 (COVID-19) Illness and Hospitalization—United States, February–September 2020

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Inference of seasonal and pandemic influenza transmission dynamics

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Will SARS-CoV-2 become endemic?

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Role of meteorological factors in the transmission of SARS-CoV-2 in the United States

Ma, Y., Pei, S., Shaman, J. L., Dubrow, R., & Chen, K. (2021) · Nature Communications · doi:10.1038/s41467-021-23866-7 · Cited by 142 · see citing works

Decline in SARS-CoV-2 Antibodies After Mild Infection Among Frontline Health Care Personnel in a Multistate Hospital Network — 12 States, April–August 2020

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Undiagnosed SARS-CoV-2 seropositivity during the first 6 months of the COVID-19 pandemic in the United States

Kalish, H. R., Klumpp-Thomas, C. A., Hunsberger, S., Baus, H. A., Fay, M. P., Siripong, N., Wang, J., Hicks, J., Mehalko, J. L., Travers, J., et al. (2021) · Science Translational Medicine · doi:10.1126/scitranslmed.abh3826 · Cited by 135 · see citing works

Initial Simulation of SARS-CoV2 Spread and Intervention Effects in the Continental USPreprint

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Waning Antibody Responses in Asymptomatic and Symptomatic SARS-CoV-2 Infection

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Epidemiological Characteristics of 2009 (H1N1) Pandemic Influenza Based on Paired Sera from a Longitudinal Community Cohort Study

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Ensemble forecast of human West Nile virus cases and mosquito infection rates

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Reconstructing influenza incidence by deconvolution of daily mortality time series

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First detection of SARS-CoV-2 spike protein N501 mutation in Italy in August, 2020

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Report 34: COVID-19 infection fatality ratio: estimates from seroprevalence

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Estimating the Cumulative Incidence of SARS-CoV-2 Infection and the Infection Fatality Ratio in Light of Waning Antibodies

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Successful awake proning is associated with improved clinical outcomes in patients with COVID-19: single-centre high-dependency unit experience

Hallifax, R., Porter, B., Elder, P. J., Evans, S. B., Turnbull, C. D., Hynes, G., Lardner, R., Archer, K., Bettinson, H., Nickol, A. H., et al. (2020) · BMJ Open Respiratory Research · doi:10.1136/bmjresp-2020-000678 · Cited by 66 · see citing works

Retrospective Parameter Estimation and Forecast of Respiratory Syncytial Virus in the United States

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Projection of COVID-19 Cases and Deaths in the US as Individual States Re-open May 4, 2020Preprint

Yamana, T. K., Pei, S., Kandula, S., & Shaman, J. L. (2020) · medRxiv · doi:10.1101/2020.05.04.20090670 · Cited by 43 · see citing works

Evolution of outcomes for patients hospitalised during the first 9 months of the SARS-CoV-2 pandemic in France: A retrospective national surveillance data analysis

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Estimating the cumulative incidence of SARS-CoV-2 infection and the infection fatality ratio in light of waning antibodiesPreprint

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Timing the SARS-CoV-2 Index Case in Hubei ProvincePreprint

Pekar, J. E., Worobey, M., Moshiri, N., Scheffler, K., & Wertheim, J. O. (2020) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2020.11.20.392126 · Cited by 16 · see citing works

Pandemic fatigue impedes mitigation of COVID-19 in Hong KongPreprint

Du, Z., Wang, L., Shan, S., Lam, D., Tsang, T. K., Xiao, J., Gao, H., Yang, B., Ali, S. T., Pei, S., et al. (2021) · Research Square · doi:10.21203/rs.3.rs-591241/v1 · Cited by 5 · see citing works

The Lancet Commission on lessons for the future from the COVID-19 pandemic

Sachs, J. D., Karim, S. S. A., Aknin, L., Allen, J., Brosbøl, K., Colombo, F., Barron, G. C., Espinosa, M. F., Gaspar, V., Gaviria, A., et al. (2022) · The Lancet · doi:10.1016/s0140-6736(22)01585-9 · Cited by 842 · see citing works

Human genetic and immunological determinants of critical COVID-19 pneumonia

Zhang, Q., Bastard, P., Effort, C. H. G., Karbuz, A., Gervais, A., Tayoun, A. N. A., Aiuti, A., Bélot, A., Bolze, A., Gaudet, A., et al. (2022) · Nature · doi:10.1038/s41586-022-04447-0 · Cited by 372 · see citing works

The risk of COVID-19 death is much greater and age dependent with type I IFN autoantibodies

Manry, J., Bastard, P., Gervais, A., Voyer, T. L., Rosain, J., Philippot, Q., Michailidis, E., Hoffmann, H.-H., Eto, S., García-Prat, M., et al. (2022) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.2200413119 · Cited by 194 · see citing works

Outcomes of patients with HIV and COVID-19 co-infection: a systematic review and meta-analysis

Danwang, C., Noubiap, J. J., Robert, A. R., & Yombi, J. C. (2022) · AIDS Research and Therapy · doi:10.1186/s12981-021-00427-y · Cited by 155 · see citing works

Context-specific emergence and growth of the SARS-CoV-2 Delta variant

McCrone, J. T., Hill, V., Bajaj, S., Pena, R. E., Lambert, B. C., Inward, R. P. D., Bhatt, S., Volz, E., Ruis, C., Dellicour, S., et al. (2022) · Nature · doi:10.1038/s41586-022-05200-3 · Cited by 120 · see citing works

Smartphone apps in the COVID-19 pandemic

Pandit, J. A., Radin, J. M., Quer, G., & Topol, E. J. (2022) · Nature Biotechnology · doi:10.1038/s41587-022-01350-x · Cited by 101 · see citing works

Quantifying the Impact of COVID-19 Nonpharmaceutical Interventions on Influenza Transmission in the United States

Qi, Y., Shaman, J. L., & Pei, S. (2021) · The Journal of Infectious Diseases · doi:10.1093/infdis/jiab485 · Cited by 71 · see citing works

Dissecting human population variation in single-cell responses to SARS-CoV-2

Aquino, Y., Bisiaux, A., Li, Z., O’Neill, M. B., Mendoza‐Revilla, J., Merkling, S. H., Kerner, G., Hasan, M., Libri, V., Bondet, V., et al. (2023) · Nature · doi:10.1038/s41586-023-06422-9 · Cited by 67 · see citing works

Comparison of control and transmission of COVID-19 across epidemic waves in Hong Kong: an observational study

Yang, B., Lin, Y., Xiong, W., Liu, C., Gao, H., Ho, F. C. S., Zhou, J., Zhang, R., Wong, J. Y., Cheung, J. K., et al. (2023) · The Lancet Regional Health - Western Pacific · doi:10.1016/j.lanwpc.2023.100969 · Cited by 58 · see citing works

Epidemiological characteristics and transmission dynamics of dengue fever in China

Ni, H., Cai, X., Ren, J., Dai, T., Zhou, J., Lin, J., Wang, L. J., Wang, L., Pei, S., Yao, Y., et al. (2024) · Nature Communications · doi:10.1038/s41467-024-52460-w · Cited by 56 · see citing works

Interfering with Interferons: A Critical Mechanism for Critical COVID-19 Pneumonia

Su, H. C., Jing, H., Zhang, Y., & Casanova, J. (2023) · Annual Review of Immunology · doi:10.1146/annurev-immunol-101921-050835 · Cited by 66 · see citing works

The impact of COVID-19 vaccination in the US: Averted burden of SARS-COV-2-related cases, hospitalizations and deaths

Yamana, T. K., Galanti, M., Pei, S., Fusco, M. D., Angulo, F. J., Moran, M. M., Khan, F. L., Swerdlow, D. L., & Shaman, J. L. (2023) · PLoS ONE · doi:10.1371/journal.pone.0275699 · Cited by 48 · see citing works

MgIn2S4@In2O3 hierarchical tubular heterostructures with expedited photocarrier separation for efficient visible-light-driven antimicrobial activity

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Evaluating the impact of stay-at-home and quarantine measures on COVID-19 spread

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COVID-19 Vaccination Coverage, Behaviors, and Intentions among Adults with Previous Diagnosis, United States

Nguyen, K. H., Huang, J. Y., Mansfield, K. A., Corlin, L., & Allen, J. D. (2022) · Emerging infectious diseases · doi:10.3201/eid2803.211561 · Cited by 32 · see citing works

Substance use disorders and COVID-19: An analysis of nation-wide Veterans Health Administration electronic health records

Hasin, D. S., Fink, D. S., Olfson, M., Saxon, A. J., Malte, C. A., Keyes, K. M., Gradus, J. L., Cerdá, M., Maynard, C. C., Keyhani, S., et al. (2022) · Drug and Alcohol Dependence · doi:10.1016/j.drugalcdep.2022.109383 · Cited by 31 · see citing works

Effects of trust, risk perception, and health behavior on COVID-19 disease burden: Evidence from a multi-state US survey

Ridenhour, B. J., Sarathchandra, D., Seamon, E., Brown, H., Leung, F.-Y., Johnson-León, M., Megheib, M., Miller, C. R., & Johnson­-Leung, J. (2022) · PLoS ONE · doi:10.1371/journal.pone.0268302 · Cited by 31 · see citing works

Risk of COVID-19 infection and severe disease in MS patients on different disease-modifying therapies

Smith, T. E., Madhavan, M., Gratch, D., Patel, A., Saha, V., Sammarco, C. L., Rimler, Z., Zuniga, G., Gragui, D., Charvet, L. E., et al. (2022) · Multiple Sclerosis and Related Disorders · doi:10.1016/j.msard.2022.103735 · Cited by 30 · see citing works

COVID-19 vaccination decreased COVID-19 hospital length of stay, in-hospital death, and increased home discharge

Lee, S. W., Ma, D., Davoodian, A., Ayutyanont, N., & Werner, B. (2023) · Preventive Medicine Reports · doi:10.1016/j.pmedr.2023.102152 · Cited by 28 · see citing works

HIV and COVID-19 Co-Infection: Epidemiology, Clinical Characteristics, and Treatment

Basoulis, D., Mastrogianni, E., Voutsinas, P.-M., & Psichοgiou, M. (2023) · Viruses · doi:10.3390/v15020577 · Cited by 29 · see citing works

Population Immunity to Pre-Omicron and Omicron Severe Acute Respiratory Syndrome Coronavirus 2 Variants in US States and Counties Through 1 December 2021

Klaassen, F., Chitwood, M. H., Cohen, T., Pitzer, V. E., Russi, M., Swartwood, N. A., Salomon, J. A., & Menzies, N. A. (2022) · Clinical Infectious Diseases · doi:10.1093/cid/ciac438 · Cited by 25 · see citing works

Pediatric and adult patients with ME/CFS following COVID-19: A structured approach to diagnosis using the Munich Berlin Symptom Questionnaire (MBSQ)

Peo, L.-C., Wiehler, K., Paulick, J., Gerrer, K., Leone, A., Viereck, A., Haegele, M., Stojanov, S., Warlitz, C., Augustin, S., et al. (2023) · European Journal of Pediatrics · doi:10.1007/s00431-023-05351-z · Cited by 26 · see citing works

MetaCity: Data-driven sustainable development of complex cities

Zhang, Y., Lin, Y., Zheng, G., Liu, Y., Sukiennik, N., Xu, F., Xu, Y., Lu, F., Wang, Q., Lai, Y., et al. (2025) · The Innovation · doi:10.1016/j.xinn.2024.100775 · Cited by 27 · see citing works

The risk of COVID-19 death is much greater and age-dependent with type I IFN autoantibodiesPreprint

Manry, J., Bastard, P., Gervais, A., Voyer, T. L., Rosain, J., Philippot, Q., Michailidis, E., Hoffmann, H.-H., Eto, S., García-Prat, M., et al. (2022) · Research Square · doi:10.21203/rs.3.rs-1225906/v1 · Cited by 24 · see citing works

Spatiotemporal disparities in regional public risk perception of COVID-19 using Bayesian Spatiotemporally Varying Coefficients (STVC) series models across Chinese cities

Song, C., Yin, H., Shi, X., Xie, M., Yang, S., Zhou, J., Wang, X., Tang, Z., Yang, Y., & Pan, J. (2022) · International Journal of Disaster Risk Reduction · doi:10.1016/j.ijdrr.2022.103078 · Cited by 24 · see citing works

Integrating The US Public Health And Medical Care Systems To Improve Health Crisis Response

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Two Ligand-Binding Sites on SARS-CoV-2 Non-Structural Protein 1 Revealed by Fragment-Based X-ray Screening

Ma, S., Damfo, S. A., Lou, J., Pinotsis, N., Bowler, M. W., Haider, S. M., & Kozielski, F. (2022) · International Journal of Molecular Sciences · doi:10.3390/ijms232012448 · Cited by 22 · see citing works

Contact tracing reveals community transmission of COVID-19 in New York City

Pei, S., Kandula, S., Vega, J. C., Yang, W., Foerster, S., Thompson, C. N., Baumgartner, J., Ahuja, S. D., Blaney, K., Varma, J. K., et al. (2022) · Nature Communications · doi:10.1038/s41467-022-34130-x · Cited by 22 · see citing works

Projecting the COVID-19 immune landscape in Japan in the presence of waning immunity and booster vaccination

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Machine learning COVID-19 detection from wearables

Nestor, B. A., Hunter, J., Kainkaryam, R., Drysdale, E., Inglis, J. B., Shapiro, A. D., Nagaraj, S., Ghassemi, M., Foschini, L., & Goldenberg, A. (2023) · The Lancet Digital Health · doi:10.1016/s2589-7500(23)00045-6 · Cited by 17 · see citing works

Age-specific transmission dynamics of SARS-CoV-2 during the first 2 years of the pandemic

Boldea, O., Alipoor, A., Pei, S., Shaman, J. L., & Rozhnova, G. (2024) · PNAS Nexus · doi:10.1093/pnasnexus/pgae024 · Cited by 17 · see citing works

Impaired systemic oxygen extraction long after mild COVID-19: potential perioperative implications

Heerdt, P. M., Shelley, B., & Singh, I. (2021) · British Journal of Anaesthesia · doi:10.1016/j.bja.2021.12.036 · Cited by 16 · see citing works

Overcoming Disaster Through Critical Consciousness and Ideological Change

Sullivan, A. L. (2022) · School Psychology Review · doi:10.1080/2372966x.2022.2093127 · Cited by 17 · see citing works

Modeling strategies for the allocation of SARS-CoV-2 vaccines in the United States

Walker, J., Paul, P., Dooling, K. L., Oliver, S. E., Prasad, P. V., Steele, M. K., Gastañaduy, P. A., Johansson, M. A., Biggerstaff, M., & Slayton, R. B. (2022) · Vaccine · doi:10.1016/j.vaccine.2022.02.015 · Cited by 15 · see citing works

Sensitivity-enhanced nanoplasmonic biosensor using direct immobilization of two engineered nanobodies for SARS-CoV-2 spike receptor-binding domain detection

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Augmenting reactive species over MgIn2S4-In2O3 hybrid nanofibers for efficient photocatalytic antibacterial activity

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Central Diabetes Insipidus: Another Rare Complication of SARS-CoV-2 Infection in Children?

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The disappearing COVID-Naïve Population and comparative Roche vs. Abbott Test sensitivity: evidence from antibody seroprevalence in Milwaukee County, Wisconsin

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The predictive power of exponential numeracy

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Antibody Seroprevalence, Infection and Surveillance for SARS-CoV-2 in Residents and Staff of New Jersey Long-Term Care Facilities

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Reconstructing the early spatial spread of pandemic respiratory viruses in the United States

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From chaos to clarity: The scientometric breakthrough in COVID-19 research

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Information and Knowledge Diffusion Dynamics in Complex Networks with Independent Spreaders

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The relationship between chronic air pollution exposure, neighborhood environmental vulnerability, and adverse COVID-19 morbidities among hospitalized New York City residents

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Long-Term Fine Particulate Matter Concentrations and Prevalence of Severe Acute Respiratory Syndrome Coronavirus 2: Differential Relationships by Socioeconomic Status Among Pregnant Individuals in New York City

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Reconstructing the course of the COVID-19 epidemic over 2020 for US states and counties: Results of a Bayesian evidence synthesis model

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A “Tail” of Two Cities: Fatality-based Modeling of COVID-19 Evolution in New York City and Cook County, ILPreprint

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Transmission in Latent Period Causes A Large Number of Infected People in the United StatesPreprint

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Modeling community COVID-19 transmission risk associated with U.S. universities

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