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Biogeographical Differences in the Influence of Maternal Microbial Sources on the Early Successional Development of the Bovine Neonatal Gastrointestinal tract
Open accessAbstract
The impact of maternal microbial influences on the early choreography of the neonatal calf microbiome were investigated. Luminal content and mucosal scraping samples were collected from ten locations in the calf gastrointestinal tract (GIT) over the first 21 days of life, along with postpartum maternal colostrum, udder skin, and vaginal scrapings. Microbiota were found to vary by anatomical location, between the lumen and mucosa at each GIT location, and differentially enriched for maternal vaginal, skin, and colostral microbiota. Most calf sample sites exhibited a gradual increase in α-diversity over the 21 days beginning the first few days after birth. The relative abundance of Firmicutes was greater in the proximal GIT, while Bacteroidetes were greater in the distal GIT. Proteobacteria exhibited greater relative abundances in mucosal scrapings relative to luminal content. Forty-six percent of calf luminal microbes and 41% of mucosal microbes were observed in at-least one maternal source, with the majority being shared with microbes on the skin of the udder. The vaginal microbiota were found to harbor and uniquely share many common and well-described fibrolytic rumen bacteria, as well as methanogenic archaea, potentially indicating a role for the vagina in populating the developing rumen and reticulum with microbes important to the nutrition of the adult animal.
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In the citing paper
“Direct contact with the mother offers a constant source of microbes through the mouth, feces, skin and milk (Yeoman et al., 2018), sources that are not available for calves raised in isolation on milk replacer.”
From Addressing global ruminant agricultural challenges through understanding the rumen microbiome: past, present, and future (2018) · cites this paper as Yeoman et al., 2018
In the citing paper
“(i) initial colonization (0–2 days post-partum) originated from a combination of sources such as microbiota of mother's vagina, skin, colostrum and microbes within the environment (Van Nimwegen et al., 2011; Yeoman et al., 2018);”
From Addressing global ruminant agricultural challenges through understanding the rumen microbiome: past, present, and future (2018) · cites this paper as Yeoman et al., 2018
In the citing paper
“Most microbes flowing from the rumen into the abomasum are lysed by the low pH and enzymatic activity within the organ.”
From Addressing global ruminant agricultural challenges through understanding the rumen microbiome: past, present, and future (2018) · cites this paper as Yeoman et al., 2018
In the citing paper
“As a consequence of the harsh environmental conditions prevailing in the abomasum and at the beginning of the small intestine, microbial numbers and diversity plummet by several orders of magnitude in the abomasum, duodenum and jejunum as compared to the rumen (Frey et al., 2010; He et al., 2018; Yeoman et al., 2018).”
From Addressing global ruminant agricultural challenges through understanding the rumen microbiome: past, present, and future (2018) · cites this paper as Yeoman et al., 2018
In the citing paper
“Mucosa-associated communities differ from those associated with luminal contents; and also vary among intestinal regions (Malmuthuge et al., 2014; Mao et al., 2015; Yeoman et al., 2018).”
From Addressing global ruminant agricultural challenges through understanding the rumen microbiome: past, present, and future (2018) · cites this paper as Yeoman et al., 2018
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Metadata
- Authors
- Yeoman, C. J., Ishaq, S. L., Bichi, E., Olivo, S. K., Lowe, J., & Aldridge, B. M.
- Affiliations
- Montana State University (US)
- University of Illinois Urbana-Champaign (US)
- Corresponding author
- Yeoman, Carl J.
- Aldridge, Brian M.
- Venue
- Scientific Reports
- Published
- 2018-02-16
- Volume
- 8
- Issue
- 1
- Pages
- 3197-3197
- ISSN
- 2045-2322 (ISSN-L)
- PMC
- PMC5816665
- OpenAlex
- W2805505033
- Cited by
- 168
- References
- 85
- Citations by year
- 2026: 12 · 2025: 13 · 2024: 23 · 2023: 25 · 2022: 18 · 2021: 25 · 2020: 26 · 2019: 17 · 2018: 9
- FWCI
- 32.48
- Type
- journal article
- Language
- en
- Open access
- gold
- doi.org
- Locations
- Scientific Reports (publishedVersion, cc-by)
- PubMed Central (publishedVersion, cc-by)
- PubMed (publishedVersion)
- Montana State University ScholarWorks (Montana State University) (submittedVersion, cc-by)
- DOAJ (DOAJ: Directory of Open Access Journals) (submittedVersion)
- Funders
- U.S. Department of Agriculture
- Montana State University
- Montana Agricultural Experiment Station (MONB00113)
- National Institute of Food and Agriculture (W4177)
- Topics
- Life Sciences › Agricultural and Biological Sciences › Animal Science and Zoology › Ruminant Nutrition and Digestive Physiology
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Gut microbiota and health
- Life Sciences › Agricultural and Biological Sciences › Animal Science and Zoology › Animal Nutrition and Physiology
- Keywords
- gastrointestinal tract development, colostrum, vaginal microbiota, rumen bacteria, methanogenic archaea, Firmicutes, Bacteroidetes, Proteobacteria, microbial diversity
- MeSH terms
- Animals, Animals, Newborn, Cattle, Colostrum, Female, Mothers, Mucous Membrane, Pregnancy, Rumen, Vagina, Euryarchaeota, Gastrointestinal Tract, Microbiota
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
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