CircRNAs in the brain
Open accessAbstract
Circular RNAs (circRNAs) are highly abundant and evolutionarily conserved non-coding RNAs produced by circularization of specific exons. Since their re-discovery as potential regulators of gene expression, thousands of circRNAs were detected in different tissues and cell types across most organisms. Accumulating data suggest key roles for them in the central nervous system. Neuronal-expressed RNAs are diverted to yield highly enriched CircRNAs in human, mouse, pig and flies, with many of them enriched in neuronal tissues. CircRNA levels are dynamically modulated in neurons, both during differentiation and following bursts of electrical activity, and accumulate with age, and many of them are enriched in synapses. Together, available data suggest that circRNAs have important roles in synaptic plasticity and neuronal function. This review covers current advances in the field and lays out hypotheses regarding functions of circRNAs in the brain as well as their putative involvement in initiation and progression of neurodegenerative processes.
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CircRNAs play essential roles in neurological disorders because they back-splice from neural genes and many circRNAs originate from genes with pivotal regulatory functions in neurons and in brain development.
“CircRNAs are believed to play essential roles in neurological disorders because they back-splice from neural genes and many circRNAs originate from genes with pivotal regulatory functions in neurons and in brain development [67].”
From Circular RNAs in depression: Biogenesis, function, expression, and therapeutic potential (2021) · cites this paper as [67]
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Cites
Circular RNAs are a large class of animal RNAs with regulatory potency
Memczak, S., Jens, M., Elefsinioti, A., Torti, F., Krueger, J., Rybak, A., Maier, L., Mackowiak, S. D., Gregersen, L. H., Munschauer, M., et al. (2013) · Nature · doi:10.1038/nature11928 · Cited by 7,990 · see citing works
Natural RNA circles function as efficient microRNA sponges
Hansen, T. B., Jensen, T. I., Clausen, B. H., Bramsen, J. B., Finsen, B., Damgaard, C. K., & Kjems, J. (2013) · Nature · doi:10.1038/nature11993 · Cited by 7,985 · see citing works
DeJesus-Hernandez, M., Mackenzie, I. R., Boeve, B. F., Boxer, A. L., Baker, M., Rutherford, N. J., Nicholson, A. M., Finch, N. A., Flynn, H., Adamson, J., et al. (2011) · Neuron · doi:10.1016/j.neuron.2011.09.011 · Cited by 4,936 · see citing works
A Hexanucleotide Repeat Expansion in C9ORF72 Is the Cause of Chromosome 9p21-Linked ALS-FTD
Renton, A. E., Majounie, E., Waite, A., Simón-Sánchez, J., Rollinson, S., Gibbs, J. R., Schymick, J. C., Laaksovirta, H., van Swieten, J. C., Myllykangas, L., et al. (2011) · Neuron · doi:10.1016/j.neuron.2011.09.010 · Cited by 4,409 · see citing works
Circular RNAs are abundant, conserved, and associated with ALU repeats
Jeck, W. R., Sorrentino, J. A., Wang, K., Slevin, M. K., Burd, C. E., Liu, J., Marzluff, W. F., & Sharpless, N. E. (2013) · RNA · doi:10.1261/rna.035667.112 · Cited by 4,388 · see citing works
circRNA biogenesis competes with pre-mRNA splicing
Ashwal-Fluss, R., Meyer, M., Pamudurti, N. R., Ivanov, A., Bartok, O., Hanan, M., Evantal, N., Memczak, S., Rajewsky, N., & Kadener, S. (2014) · Molecular Cell · doi:10.1016/j.molcel.2014.08.019 · Cited by 3,083 · see citing works
Self-citationDetecting and characterizing circular RNAs
Jeck, W. R., & Sharpless, N. E. (2014) · Nature Biotechnology · doi:10.1038/nbt.2890 · Cited by 2,685 · see citing works
Salzman, J., Gawad, C., Wang, P. L., Lacayo, N. J., & Brown, P. O. (2012) · PLoS ONE · doi:10.1371/journal.pone.0030733 · Cited by 2,457 · see citing works
Circular RNAs in the Mammalian Brain Are Highly Abundant, Conserved, and Dynamically Expressed
Rybak-Wolf, A., Stottmeister, C., Glažar, P., Jens, M., Pino, N., Giusti, S., Hanan, M., Behm, M., Bartok, O., Ashwal-Fluss, R., et al. (2015) · Molecular Cell · doi:10.1016/j.molcel.2015.03.027 · Cited by 2,423 · cited 10× · see citing works
“no correlation between the expression levels of the circRNA and the linear form.(19,27,36) This lack of correlation may be due post-transcriptional events leading to high stability of the circRNAs or low half-life of the linear host mRNA.”
BackgroundMethodInfluentialSelf-citationThe RNA Binding Protein Quaking Regulates Formation of circRNAs
Conn, S. J., Pillman, K. A., Toubia, J., Conn, V. M., Salmanidis, M., Phillips, C. A., Roslan, S., SCHREIBER, A. W., Gregory, P. A., & Goodall, G. J. (2015) · Cell · doi:10.1016/j.cell.2015.02.014 · Cited by 2,177 · see citing works
Zheng, Q., Bao, C., Guo, W., Li, S., Chen, J., Chen, B., Luo, Y., Lyu, D., Li, Y., Shi, G., et al. (2016) · Nature Communications · doi:10.1038/ncomms11215 · Cited by 2,045 · see citing works
Complementary Sequence-Mediated Exon Circularization
Zhang, X.-O., Wang, H.-B., Zhang, Y., Lu, X., Chen, L.-L., & Yang, L. (2014) · Cell · doi:10.1016/j.cell.2014.09.001 · Cited by 1,999 · cited 3× · see citing works
“ADAR editing enzymes can efficiently bind and edit reverse complementary sequences, leading to the disruption of RNA secondary structures, which in some cases are key for the modulation of circRNAs production.(2,28) Indeed, intronic complementary sequences surrounding circRNAs are enriched in A-to-I editing cites, inc…”
BackgroundConverging Mechanisms in ALS and FTD: Disrupted RNA and Protein Homeostasis
Ling, S.-C., Polymenidou, M., & Cleveland, D. W. (2013) · Neuron · doi:10.1016/j.neuron.2013.07.033 · Cited by 1,811 · see citing works
Foxo3 circular RNA retards cell cycle progression via forming ternary complexes with p21 and CDK2
Du, W. W., Yang, W., Liu, E., Yang, Z., Dhaliwal, P., & Yang, B. B. (2016) · Nucleic Acids Research · doi:10.1093/nar/gkw027 · Cited by 1,699 · see citing works
Expanded identification and characterization of mammalian circular RNAs
Guo, J. U., Agarwal, V., Guo, H., & Bartel, D. P. (2014) · Genome biology · doi:10.1186/s13059-014-0409-z · Cited by 1,578 · see citing works
Neural circular RNAs are derived from synaptic genes and regulated by development and plasticity
You, X., Vlatkovic, I., Babic, A., Will, T., Epstein, I., Tushev, G., Akbalik, G., Wang, M., Glock, C., Quedenau, C., et al. (2015) · Nature Neuroscience · doi:10.1038/nn.3975 · Cited by 1,149 · see citing works
Analysis of Intron Sequences Reveals Hallmarks of Circular RNA Biogenesis in Animals
Ivanov, A., Memczak, S., Wyler, E., Torti, F., Porath, H. T., Orejuela, M. R., Piechotta, M., Levanon, E. Y., Landthaler, M., Dieterich, C., et al. (2014) · Cell Reports · doi:10.1016/j.celrep.2014.12.019 · Cited by 1,092 · see citing works
Ash, P. E. A., Bieniek, K. F., Gendron, T. F., Caulfield, T. R., Lin, W.-L., DeJesus‐Hernandez, M., van Blitterswijk, M., Jansen‐West, K. R., Paul, J. W., Rademakers, R., et al. (2013) · Neuron · doi:10.1016/j.neuron.2013.02.004 · Cited by 1,079 · see citing works
Westholm, J. O., Miura, P., Olson, S., Shenker, S., Joseph, B. J., Sanfilippo, P., Celniker, S., Graveley, B. R., & Lai, E. C. (2014) · Cell Reports · doi:10.1016/j.celrep.2014.10.062 · Cited by 1,001 · see citing works
Short intronic repeat sequences facilitate circular RNA productionPreprint
Liang, D., & Wilusz, J. E. (2014) · Genes & Development · doi:10.1101/gad.251926.114 · Cited by 959 · see citing works
Circular RNA and miR-7 in Cancer
Hansen, T. B., Kjems, J. K., & Damgaard, C. K. (2013) · Cancer Research · doi:10.1158/0008-5472.can-13-1568 · Cited by 921 · see citing works
Pre-mRNA Processing Reaches Back toTranscription and Ahead to Translation
Moore, M. J., & Proudfoot, N. J. (2009) · Cell · doi:10.1016/j.cell.2009.02.001 · Cited by 835 · see citing works
Exon Circularization Requires Canonical Splice Signals
Starke, S., Jost, I., Roßbach, O., Schneider, T. P., Schreiner, S., Hung, L.-H., & Bindereif, A. (2014) · Cell Reports · doi:10.1016/j.celrep.2014.12.002 · Cited by 768 · see citing works
Efficient backsplicing produces translatable circular mRNAs
Wang, Y., & Wang, Z. (2014) · RNA · doi:10.1261/rna.048272.114 · Cited by 665 · see citing works
Memczak, S., Papavasileiou, P., Peters, O., & Rajewsky, N. (2015) · PLoS ONE · doi:10.1371/journal.pone.0141214 · Cited by 639 · see citing works
Circular RNA (circRNA) in Alzheimer’s disease (AD)
Lukiw, W. J. (2013) · Frontiers in Genetics · doi:10.3389/fgene.2013.00307 · Cited by 636 · cited 1× · see citing works
“CDR1as/ciRS-7 is also strongly miss-regulated in the hippocampal CA1 region of Alzheimer disease (AD) patients.(47) Moreover, neural overexpression of CDR1as/ciRS-7 in zebrafish leads to brain developmental defects and impairment in midbrain development, which resembles the phenotype of miR-7 knock-down.”
BackgroundRepression of α-synuclein expression and toxicity by microRNA-7
Junn, E., Lee, K.-W., Jeong, B. S., Chan, T. W., Im, J.-Y., & Mouradian, M. M. (2009) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0906277106 · Cited by 634 · see citing works
The Central Dogma Decentralized: New Perspectives on RNA Function and Local Translation in Neurons
Holt, C. E., & Schuman, E. M. (2013) · Neuron · doi:10.1016/j.neuron.2013.10.036 · Cited by 525 · see citing works
Kramer, M. C., Liang, D., Tatomer, D. C., Gold, B., March, Z. M., Cherry, S. R., & Wilusz, J. E. (2015) · Genes & Development · doi:10.1101/gad.270421.115 · Cited by 494 · see citing works
Post-transcriptional Regulation of α-Synuclein Expression by mir-7 and mir-153
Doxakis, E. (2010) · Journal of Biological Chemistry · doi:10.1074/jbc.m109.086827 · Cited by 485 · see citing works
Raj, B., & Blencowe, B. J. (2015) · Neuron · doi:10.1016/j.neuron.2015.05.004 · Cited by 475 · see citing works
Spatio-temporal regulation of circular RNA expression during porcine embryonic brain development
Venø, M. T., Hansen, T. B., Venø, S. T., Clausen, B. H., Grebing, M., Finsen, B. R., Holm, I. E., & Kjems, J. (2015) · Genome biology · doi:10.1186/s13059-015-0801-3 · Cited by 475 · see citing works
Rolling Circle Translation of Circular RNA in Living Human Cells
Abe, N., Matsumoto, K., Nishihara, M., Nakano, Y., Shibata, A., Maruyama, H., Shuto, S., Matsuda, A., Yoshida, M., Ito, Y., et al. (2015) · Scientific Reports · doi:10.1038/srep16435 · Cited by 444 · see citing works
Circular RNAs in cancer: novel insights into origins, properties, functions and implications.
Li, J., Yang, J., Zhou, P., Le, Y., Zhou, C., Wang, S., Xu, D., Lin, H., & Gong, Z. (2015) · Europe PMC (PubMed Central) · Cited by 431 · see citing works
Neuronal regulation of alternative pre-mRNA splicing
Li, Q., Lee, J.-A., & Black, D. L. (2007) · Nature Reviews Neuroscience · doi:10.1038/nrn2237 · Cited by 376 · see citing works
Local RNA Translation at the Synapse and in Disease: Figure 1.
Liu‐Yesucevitz, L., Bassell, G. J., Gitler, A. D., Hart, A. C., Klann, E., Richter, J. D., Warren, S. T., & Wolozin, B. L. (2011) · Journal of Neuroscience · doi:10.1523/jneurosci.4105-11.2011 · Cited by 289 · see citing works
Molecular Mechanisms of Synaptic Specificity in Developing Neural Circuits
Williams, M. E., de Wit, J., & Ghosh, A. (2010) · Neuron · doi:10.1016/j.neuron.2010.09.007 · Cited by 173 · see citing works
Berson, A., Barbash, S., Shaltiel, G., Goll, Y., Hanin, G., Greenberg, D., Ketzef, M., Becker, A. J., Friedman, A., & Soreq, H. (2012) · EMBO Molecular Medicine · doi:10.1002/emmm.201100995 · Cited by 167 · see citing works
Self-citationmiR-7 and miR-153 protect neurons against MPP+-induced cell death via upregulation of mTOR pathway
Fragkouli, A., & Doxakis, E. (2014) · Frontiers in Cellular Neuroscience · doi:10.3389/fncel.2014.00182 · Cited by 147 · see citing works
RNA Editing: A Contributor to Neuronal Dynamics in the Mammalian Brain
Behm, M., & Öhman, M. (2016) · Trends in Genetics · doi:10.1016/j.tig.2015.12.005 · Cited by 141 · see citing works
MicroRNA-7 Protects against 1-Methyl-4-Phenylpyridinium-Induced Cell Death by Targeting RelA
Choi, D. C., Chae, Y.-J., Kabaria, S., Chaudhuri, A. D., Jain, M. R., Li, H., Mouradian, M. M., & Junn, E. (2014) · Journal of Neuroscience · doi:10.1523/jneurosci.0985-14.2014 · Cited by 103 · see citing works
The role of microRNAs in human neural stem cells, neuronal differentiation and subtype specification
Stappert, L., Roese-Koerner, B., & Brüstle, O. (2014) · Cell and Tissue Research · doi:10.1007/s00441-014-1981-y · Cited by 97 · see citing works
Non-coding RNA in neural function, disease, and aging
Szafranski, K. (2015) · Frontiers in Genetics · doi:10.3389/fgene.2015.00087 · Cited by 85 · see citing works
A role for the survival of motor neuron protein in mRNP assembly and transport
Donlin-Asp, P., Bassell, G. J., & Rossoll, W. (2016) · Current Opinion in Neurobiology · doi:10.1016/j.conb.2016.04.004 · Cited by 72 · see citing works
Fratta, P., Polke, J. M., Newcombe, J., Mizielinska, S., Lashley, T., Poulter, M., Beck, J. A., Preza, E., Devoy, A., Sidle, K. C. L., et al. (2014) · Neurobiology of Aging · doi:10.1016/j.neurobiolaging.2014.07.037 · Cited by 61 · see citing works
Long noncoding RNAs: Central to nervous system development
Hart, R. P., & Goff, L. A. (2016) · International Journal of Developmental Neuroscience · doi:10.1016/j.ijdevneu.2016.06.001 · Cited by 36 · see citing works
FTD and ALS: Genetic Ties that Bind
Orr, H. T. (2011) · Neuron · doi:10.1016/j.neuron.2011.10.001 · Cited by 34 · see citing works
The ADAR RNA editing enzyme controls neuronal excitability in Drosophila melanogaster
Li, X., Overton, I. M., Baines, R. A., et al. (2013) · Nucleic Acids Research · doi:10.1093/nar/gkt909 · Cited by 31 · see citing works
SnapShot: Local Protein Translation in Dendrites
Dieck, S. T., Hanus, C., & Schuman, E. M. (2014) · Neuron · doi:10.1016/j.neuron.2014.02.009 · Cited by 25 · see citing works
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The biogenesis, biology and characterization of circular RNAs
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Circular RNAs in depression: Biogenesis, function, expression, and therapeutic potential
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- Authors
- Hanan, M., Soreq, H., & Kadener, S.
- Affiliations
- Hebrew University of Jerusalem (IL)
- Department of Biological Chemistry, Silberman Institute of Life Sciences, The Hebrew University of Jerusalem, The Edmond J. Safra Campus, Jerusalem, Israel
- ORCID
- Soreq, Hermona
- Venue
- RNA Biology
- Publisher
- Informa UK Limited
- Published
- 2016-12-05
- Volume
- 14
- Issue
- 8
- Pages
- 1028-1034
- ISSN
- 1547-6286 (ISSN-L)
- 1555-8584
- PMC
- PMC5680707
- OpenAlex
- W2559572851
- Cited by
- 229
- References
- 49
- Citations by year
- 2026: 9 · 2025: 15 · 2024: 31 · 2023: 28 · 2022: 41 · 2021: 41 · 2020: 30 · 2019: 18 · 2018: 9 · 2017: 6
- FWCI
- 0.99
- Type
- journal article
- Language
- en
- Open access
- bronze
- doi.org
- Locations
- RNA Biology (publishedVersion)
- PubMed Central (publishedVersion)
- PubMed (publishedVersion)
- Funders
- Teva Pharmaceutical Industries
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Circular RNAs in diseases
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › RNA Research and Splicing
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › RNA regulation and disease
- Keywords
- circular RNA, non-coding RNA, brain, neurons, synaptic plasticity, synapses, neuronal differentiation, neuronal activity, aging, neurodegeneration, gene expression regulation
- MeSH terms
- RNA, Circular, Amyotrophic Lateral Sclerosis, Animals, Brain, Drosophila melanogaster, Exons, Gene Expression Regulation, Humans, Neuronal Plasticity, Neurons, RNA, Swine, Synapses, RNA-Binding Proteins, MicroRNAs, Mice, Frontotemporal Dementia
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