Circular RNAs in the Mammalian Brain Are Highly Abundant, Conserved, and Dynamically Expressed
Open accessAbstract
Circular RNAs (circRNAs) are an endogenous class of animal RNAs. Despite their abundance, their function and expression in the nervous system are unknown. Therefore, we sequenced RNA from different brain regions, primary neurons, isolated synapses, as well as during neuronal differentiation. Using these and other available data, we discovered and analyzed thousands of neuronal human and mouse circRNAs. circRNAs were extraordinarily enriched in the mammalian brain, well conserved in sequence, often expressed as circRNAs in both human and mouse, and sometimes even detected in Drosophila brains. circRNAs were overall upregulated during neuronal differentiation, highly enriched in synapses, and often differentially expressed compared to their mRNA isoforms. circRNA expression correlated negatively with expression of the RNA-editing enzyme ADAR1. Knockdown of ADAR1 induced elevated circRNA expression. Together, we provide a circRNA brain expression atlas and evidence for important circRNA functions and values as biomarkers.
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Many circRNAs are significantly upregulated at different time points of neuron maturation in vitro.
“Many circRNAs are significantly upregulated at different time points of neuron maturation in vitro.293”
From Epigenetic regulation in major depression and other stress-related disorders: molecular mechanisms, clinical relevance and therapeutic potential (2023) · cites this paper as [293]
circRNAs are highly expressed in the brain from the embryonic stage to adulthood and are substantially upregulated during differentiation and maturation of neurons.
“They are highly expressed in the brain from the embryonic stage to adulthood and substantially upregulated during the differentiation and maturation of neurons.293”
From Epigenetic regulation in major depression and other stress-related disorders: molecular mechanisms, clinical relevance and therapeutic potential (2023) · cites this paper as [293]
CircRNAs maintain specificity and conservatism in dynamic expression and are highly enriched in the mammalian brain, independent of linear transcripts.
“CircRNAs maintain specificity and conservatism in the process of dynamic expression and are highly enriched in the mammalian brain, independent of linear transcripts [62].”
From Circular RNAs in depression: Biogenesis, function, expression, and therapeutic potential (2021) · cites this paper as [62]
CiRS-7 is abundantly expressed in the mammalian brain, where it increases the translation of the miR-7 target mRNA.
“CiRS-7 is abundantly expressed in the mammalian brain [49,62], where it increases the translation of the miR-7 target mRNA [14,49].”
From Circular RNAs in depression: Biogenesis, function, expression, and therapeutic potential (2021) · cites this paper as [62]
More than half of 15,849 mouse circRNAs, which are highly abundant, conserved, and dynamically expressed in the brain, are upregulated during the maturation of neurons.
“A study by Rybak et al. demonstrated that more than half of 15,849 mouse circRNAs, which are highly abundant, conserved, and dynamically expressed in the brain, are upregulated during the maturation of neurons [62,65].”
From Circular RNAs in depression: Biogenesis, function, expression, and therapeutic potential (2021) · cites this paper as [62]
Compared with other cytoplasmic RNAs, circRNAs seem to be more prone to being localized in synapses and their expression is correlated with neural plasticity.
“Compared with other cytoplasmic RNAs, circRNAs seem to be more prone to being localized in synapses and their expression is correlated with neural plasticity, which further supports an important function of circRNAs in synaptic transmission [50,62].”
From Circular RNAs in depression: Biogenesis, function, expression, and therapeutic potential (2021) · cites this paper as [62]
Cites
An integrated encyclopedia of DNA elements in the human genome
The ENCODE Project Consortium (2012) · Nature · doi:10.1038/nature11247 · Cited by 18,072 · see citing works
Circular RNAs are a large class of animal RNAs with regulatory potency
Memczak, S., Jens, M., Elefsinioti, A., Torti, F., Krueger, J., Rybak, A., Maier, L., Mackowiak, S. D., Gregersen, L. H., Munschauer, M., et al. (2013) · Nature · doi:10.1038/nature11928 · Cited by 7,990 · see citing works
Self-citationNatural RNA circles function as efficient microRNA sponges
Hansen, T. B., Jensen, T. I., Clausen, B. H., Bramsen, J. B., Finsen, B., Damgaard, C. K., & Kjems, J. (2013) · Nature · doi:10.1038/nature11993 · Cited by 7,985 · see citing works
Combinatorial microRNA target predictions
Krek, A., Grün, D., Poy, M. N., Wolf, R., Rosenberg, L., Epstein, E. J., MacMenamin, P., da Piedade, I., Gunsalus, K. C., Stoffel, M., et al. (2005) · Nature Genetics · doi:10.1038/ng1536 · Cited by 4,603 · see citing works
Self-citationCircular RNAs are abundant, conserved, and associated with ALU repeats
Jeck, W. R., Sorrentino, J. A., Wang, K., Slevin, M. K., Burd, C. E., Liu, J., Marzluff, W. F., & Sharpless, N. E. (2013) · RNA · doi:10.1261/rna.035667.112 · Cited by 4,388 · see citing works
circRNA biogenesis competes with pre-mRNA splicing
Ashwal-Fluss, R., Meyer, M., Pamudurti, N. R., Ivanov, A., Bartok, O., Hanan, M., Evantal, N., Memczak, S., Rajewsky, N., & Kadener, S. (2014) · Molecular Cell · doi:10.1016/j.molcel.2014.08.019 · Cited by 3,083 · see citing works
Self-citationDetecting and characterizing circular RNAs
Jeck, W. R., & Sharpless, N. E. (2014) · Nature Biotechnology · doi:10.1038/nbt.2890 · Cited by 2,685 · see citing works
Salzman, J., Gawad, C., Wang, P. L., Lacayo, N. J., & Brown, P. O. (2012) · PLoS ONE · doi:10.1371/journal.pone.0030733 · Cited by 2,457 · see citing works
Detection of nonneutral substitution rates on mammalian phylogenies
Pollard, K. S., Hubisz, M. J., Rosenbloom, K. R., & Siepel, A. (2010) · Genome Research · doi:10.1101/gr.097857.109 · Cited by 2,353 · see citing works
The RNA Binding Protein Quaking Regulates Formation of circRNAs
Conn, S. J., Pillman, K. A., Toubia, J., Conn, V. M., Salmanidis, M., Phillips, C. A., Roslan, S., SCHREIBER, A. W., Gregory, P. A., & Goodall, G. J. (2015) · Cell · doi:10.1016/j.cell.2015.02.014 · Cited by 2,187 · see citing works
Complementary Sequence-Mediated Exon Circularization
Zhang, X.-O., Wang, H.-B., Zhang, Y., Lu, X., Chen, L.-L., & Yang, L. (2014) · Cell · doi:10.1016/j.cell.2014.09.001 · Cited by 1,999 · see citing works
Cell-Type Specific Features of Circular RNA Expression
Salzman, J., Chen, R. E., Olsen, M. N., Wang, P. L., & Brown, P. O. (2013) · PLoS Genetics · doi:10.1371/journal.pgen.1003777 · Cited by 1,955 · see citing works
circBase: a database for circular RNAs
Glažar, P., Papavasileiou, P., & Rajewsky, N. (2014) · RNA · doi:10.1261/rna.043687.113 · Cited by 1,934 · see citing works
Self-citationThe human brain in numbers: a linearly scaled-up primate brain
Herculano-Houzel, S. (2009) · Frontiers in Human Neuroscience · doi:10.3389/neuro.09.031.2009 · Cited by 1,778 · see citing works
The UCSC Genome Browser Database: update 2006
Hinrichs, A. S. (2006) · Nucleic Acids Research · doi:10.1093/nar/gkj144 · Cited by 1,646 · see citing works
Circular RNAs: diversity of form and function
Lasda, E. L., & Parker, R. (2014) · RNA · doi:10.1261/rna.047126.114 · Cited by 1,193 · see citing works
Huttner, W. Β., SCHIEBLER, W., Greengard, P., & Camilli, P. V. D. (1983) · The Journal of Cell Biology · doi:10.1083/jcb.96.5.1374 · Cited by 1,172 · see citing works
Cunningham, F., Amode, M. R., Barrell, D., Beal, K., Billis, K., Brent, S., Carvalho-Silva, D., Clapham, P., Coates, G., Fitzgerald, S., et al. (2015) · Nucleic Acids Research · doi:10.1093/nar/gku1010 · Cited by 1,115 · see citing works
Circular transcripts of the testis-determining gene Sry in adult mouse testis
Capel, B., Swain, A., Nicolis, S. K., Hacker, A., Walter, M. A., Koopman, P. A., Goodfellow, P. N., & Lovell-Badge, R. H. (1993) · Cell · doi:10.1016/0092-8674(93)90279-y · Cited by 1,100 · see citing works
Analysis of Intron Sequences Reveals Hallmarks of Circular RNA Biogenesis in Animals
Ivanov, A., Memczak, S., Wyler, E., Torti, F., Porath, H. T., Orejuela, M. R., Piechotta, M., Levanon, E. Y., Landthaler, M., Dieterich, C., et al. (2014) · Cell Reports · doi:10.1016/j.celrep.2014.12.019 · Cited by 1,092 · see citing works
Self-citationWestholm, J. O., Miura, P., Olson, S., Shenker, S., Joseph, B. J., Sanfilippo, P., Celniker, S., Graveley, B. R., & Lai, E. C. (2014) · Cell Reports · doi:10.1016/j.celrep.2014.10.062 · Cited by 1,001 · see citing works
miRNA‐dependent gene silencing involving Ago2‐mediated cleavage of a circular antisense RNA
Hansen, T. B., Wiklund, E. D., Bramsen, J. B., Villadsen, S. B., Statham, A. L., Clark, S. J., & Kjems, J. (2011) · The EMBO Journal · doi:10.1038/emboj.2011.359 · Cited by 996 · see citing works
Short intronic repeat sequences facilitate circular RNA productionPreprint
Liang, D., & Wilusz, J. E. (2014) · Genes & Development · doi:10.1101/gad.251926.114 · Cited by 959 · see citing works
Exon Circularization Requires Canonical Splice Signals
Starke, S., Jost, I., Roßbach, O., Schneider, T. P., Schreiner, S., Hung, L.-H., & Bindereif, A. (2014) · Cell Reports · doi:10.1016/j.celrep.2014.12.002 · Cited by 768 · see citing works
Circular RNA (circRNA) in Alzheimer’s disease (AD)
Lukiw, W. J. (2013) · Frontiers in Genetics · doi:10.3389/fgene.2013.00307 · Cited by 636 · see citing works
Dendritic mRNA: transport, translation and function
Bramham, C. R., & Wells, D. G. (2007) · Nature reviews. Neuroscience · doi:10.1038/nrn2150 · Cited by 574 · see citing works
Coordinate Morphological and Biochemical Interconversion of Human Neuroblastoma Cells 2
Ross, R. A., Spengler, B. A., & Biedler, J. L. (1983) · JNCI Journal of the National Cancer Institute · doi:10.1093/jnci/71.4.741 · Cited by 552 · see citing works
The Long Noncoding RNA RMST Interacts with SOX2 to Regulate Neurogenesis
Ng, S., Bogu, G. K., Soh, B.-S., & Stanton, L. W. (2013) · Molecular Cell · doi:10.1016/j.molcel.2013.07.017 · Cited by 413 · see citing works
McBurney, M. W. (1993) · The International Journal of Developmental Biology · doi:10.1387/ijdb.8507558 · Cited by 379 · see citing works
Large-scale mRNA sequencing determines global regulation of RNA editing during brain developmentPreprint
Wahlstedt, H., Daniel, C., Ensterö, M., & Öhman, M. (2009) · Genome Research · doi:10.1101/gr.089409.108 · Cited by 287 · see citing works
Self-citationDynamic response of RNA editing to temperature in Drosophila
Rieder, L. E., Savva, Y. A., Reyna, M. A., Chang, Y.-J., Dorsky, J. S., Rezaei, A., & Reenan, R. A. (2015) · BMC Biology · doi:10.1186/s12915-014-0111-3 · Cited by 243 · see citing works
Inverted repeats are necessary for circularization of the mouse testis Sry transcript
Dubin, R. A., Kazmi, M. A., & D, H. O. M. (1995) · Gene · doi:10.1016/0378-1119(95)00639-7 · Cited by 154 · see citing works
Subdivision of Large Introns in Drosophila by Recursive Splicing at Nonexonic Elements
Burnette, J. M., Miyamoto‐Sato, E., Schaub, M. A., Conklin, J. F., & Lopez, A. J. (2005) · Genetics · doi:10.1534/genetics.104.039701 · Cited by 120 · see citing works
Scratching movements and facilitation of the scratch reflex produced by tubocurarine in cats
Domer, F. R., & Feldberg, W. S. (1960) · The Journal of Physiology · doi:10.1113/jphysiol.1960.sp006517 · Cited by 116 · see citing works
Alu elements shape the primate transcriptome by cis-regulation of RNA editing
Daniel, C., Silberberg, G., Behm, M., & Öhman, M. (2014) · Genome biology · doi:10.1186/gb-2014-15-2-r28 · Cited by 111 · see citing works
Self-citationOsenberg, S., Paz-Yaacov, N., Safran, M., Moshkovitz, S., Shtrichman, R., Sherf, O., Jacob‐Hirsch, J., Keshet, G. I., Amariglio, N., Itskovitz‐Eldor, J., et al. (2010) · PLoS ONE · doi:10.1371/journal.pone.0011173 · Cited by 77 · see citing works
Auto-regulatory RNA editing fine-tunes mRNA re-coding and complex behaviour in Drosophila
Savva, Y. A., Jepson, J. E. C., Şahin, A., Sugden, A. U., Dorsky, J. S., Sugden, L. A., Lawrence, C. E., & Reenan, R. A. (2012) · Nature Communications · doi:10.1038/ncomms1789 · Cited by 62 · see citing works
Altered A-to-I RNA Editing in Human Embryogenesis
Shtrichman, R., Germanguz, I., Mandel, R., Ziskind, A., Nahor, I., Safran, M., Osenberg, S., Sherf, O., Rechavi, G., & Itskovitz‐Eldor, J. (2012) · PLoS ONE · doi:10.1371/journal.pone.0041576 · Cited by 54 · see citing works
A method for generating high-yield enriched neuronal cultures from P19 embryonal carcinoma cells
Monzó, H. J., Park, T., Montgomery, J. M., Faull, R. L. M., Dragunow, M., & Curtis, M. A. (2011) · Journal of Neuroscience Methods · doi:10.1016/j.jneumeth.2011.11.008 · Cited by 28 · see citing works
Flagged first, then by citations
1 of the 40 references couldn’t be matched to a known paper.
Cited by
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The biogenesis, biology and characterization of circular RNAs
Kristensen, L. S., Andersen, M. S., Stagsted, L. V. W., Ebbesen, K. K., Hansen, T. B., & Kjems, J. (2019) · Nature Reviews Genetics · doi:10.1038/s41576-019-0158-7 · Cited by 4,823 · see citing works
Endogenous microRNA sponges: evidence and controversy
Thomson, D. W., & Dinger, M. E. (2016) · Nature Reviews Genetics · doi:10.1038/nrg.2016.20 · Cited by 1,833 · see citing works
Circ-ZNF609 is a circular RNA that can be translated and functions in myogenesis
Legnini, I., Di Timoteo, G., Rossi, F., Morlando, M., Briganti, F., Sthandier, O., Fatica, A., Santini, T., Andronache, A., Wade, M., et al. (2017) · Molecular Cell · doi:10.1016/j.molcel.2017.02.017 · Cited by 2,173 · see citing works
“Since circ-ZNF609 is highly expressed in neural tissues (Rybak-Wolf et al., 2015), we applied an established neuronal differentiation protocol (Wichterle and Peljto, 2008), and we checked for the expression of the FLAG-tagged circZNF609 RNA by northern blot in WT cells and in the F/D clone.”
BackgroundMethodInfluentialSelf-citationThe Biogenesis, Functions, and Challenges of Circular RNAs
Li, X., Yang, L. C., & Chen, L. (2018) · Molecular Cell · doi:10.1016/j.molcel.2018.06.034 · Cited by 2,043 · see citing works
Zheng, Q., Bao, C., Guo, W., Li, S., Chen, J., Chen, B., Luo, Y., Lyu, D., Li, Y., Shi, G., et al. (2016) · Nature Communications · doi:10.1038/ncomms11215 · Cited by 2,045 · see citing works
Non-coding RNA networks in cancer
Anastasiadou, E., Jacob, L. S., & Slack, F. J. (2017) · Nature reviews. Cancer · doi:10.1038/nrc.2017.99 · Cited by 1,901 · see citing works
Pamudurti, N. R., Bartok, O., Jens, M., Ashwal-Fluss, R., Stottmeister, C., Ruhe, L., Hanan, M., Wyler, E., Perez-Hernandez, D., Ramberger, E., et al. (2017) · Molecular Cell · doi:10.1016/j.molcel.2017.02.021 · Cited by 1,810 · see citing works
“Particularly in the fly brain (Westholm et al., 2014) andmammalian neuronal and muscle tissues (Rybak-Wolf et al., 2015), circRNAs are highly abundant and evolutionarily conserved.”
Self-citationThe biogenesis and emerging roles of circular RNAs
Chen, L.-L. (2016) · Nature Reviews Molecular Cell Biology · doi:10.1038/nrm.2015.32 · Cited by 1,743 · see citing works
The expanding regulatory mechanisms and cellular functions of circular RNAs
Chen, L. (2020) · Nature Reviews Molecular Cell Biology · doi:10.1038/s41580-020-0243-y · Cited by 1,714 · see citing works
CircRNA: functions and properties of a novel potential biomarker for cancer
Meng, S., Zhou, H., Feng, Z., Xu, Z., Tang, Y., Li, P., & Wu, M. (2017) · Molecular Cancer · doi:10.1186/s12943-017-0663-2 · Cited by 1,523 · see citing works
“With technological breakthroughs in high-throughput deep sequencing, large numbers of circRNAs have been recently found in human [11, 20, 40], mouse [11, 20], nematodes [11, 41], zebrafish [42], Drosophila [43], protists [44] and plants [44].”
BackgroundNoncoding RNA therapeutics—Challenges and potential solutions
Winkle, M., El-Daly, S. M., Fabbri, M., & Calin, G. A. (2021) · Nature Reviews Drug Discovery · doi:10.1038/s41573-021-00219-z · Cited by 1,551 · see citing works
Circular RNA: metabolism, functions and interactions with proteins
Zhou, W.-Y., Cai, Z., Liu, J., Wang, D., Ju, H., & Xu, R. (2020) · Molecular Cancer · doi:10.1186/s12943-020-01286-3 · Cited by 1,437 · see citing works
“CircRNAs are stable and accumulate in many cell types, especially in neural tissues [53].”
BackgroundThe emerging roles of circRNAs in cancer and oncology
Kristensen, L. S., Jakobsen, T., Hager, H., & Kjems, J. (2021) · Nature Reviews Clinical Oncology · doi:10.1038/s41571-021-00585-y · Cited by 1,256 · see citing works
Past, present, and future of circRNAs
Patop, I. L., Wüst, S., & Kadener, S. (2019) · The EMBO Journal · doi:10.15252/embj.2018100836 · Cited by 1,228 · see citing works
“Moreover, reports show that subsets of circRNAs in neurons are localized to axons, dendrites, and synaptosomes (Rybak-Wolf et al , 2015; You et al , 2015).”
InfluentialSelf-citationLoss of a mammalian circular RNA locus causes miRNA deregulation and affects brain function
Piwecka, M., Glažar, P., Hernandez-Miranda, L. R., Memczak, S., Wolf, S. A., Rybak-Wolf, A., Filipchyk, A., Klironomos, F., Cerda Jara, C. A., Fenske, P., et al. (2017) · Science · doi:10.1126/science.aam8526 · Cited by 1,210 · see citing works
“In mammals, a few hundred circRNAs are highly expressed in major brain areas, with frequently conserved expression between humans and mice (7).”
BackgroundMethodInfluentialSelf-citationNovel Role of FBXW7 Circular RNA in Repressing Glioma Tumorigenesis
Yang, Y., Gao, X., Zhang, M., Yan, S., Sun, C., Xiao, F., Huang, N., Yang, X., Zhao, K., Zhou, H., et al. (2017) · JNCI Journal of the National Cancer Institute · doi:10.1093/jnci/djx166 · Cited by 1,108 · see citing works
“CircRNAs are novel RNA molecules with different biological functions and pathological implications (10,37,38).”
BackgroundCircular non-coding RNA ANRIL modulates ribosomal RNA maturation and atherosclerosis in humans
Holdt, L. M., Stahringer, A., Sass, K., Pichler, G., Kulak, N. A., Wilfert, W., Kohlmaier, A., Herbst, A., Northoff, B. H., Nicolaou, A., et al. (2016) · Nature Communications · doi:10.1038/ncomms12429 · Cited by 1,097 · see citing works
Circular RNAs: Characterization, cellular roles, and applications
Liu, C., & Chen, L. (2022) · Cell · doi:10.1016/j.cell.2022.04.021 · Cited by 1,081 · see citing works
Circular RNAs function as ceRNAs to regulate and control human cancer progression
Zhong, Y., Du, Y., Yang, X. F., Mo, Y., Fan, C., Xiong, F., Ren, D., Ye, X., Li, C., Wang, Y., et al. (2018) · Molecular Cancer · doi:10.1186/s12943-018-0827-8 · Cited by 1,008 · see citing works
Non-coding RNAs in disease: from mechanisms to therapeutics
Németh, K., Bayraktar, R., Ferracin, M., & Călin, G. A. (2023) · Nature Reviews Genetics · doi:10.1038/s41576-023-00662-1 · Cited by 935 · see citing works
“Although the turnover of circRNAs is largely unknown 71 , it most likely involves secretion via exosomes 75 . circRNAs can interact with miRNAs, mRNAs or RNA-binding proteins (RBPs), activate or repress gene expression, or act as miRNA or protein sponges 76 SWINGN lncRNA, which is transcribed from…”
History, Discovery, and Classification of lncRNAs
Jarroux, J., Morillon, A., & Pinskaya, M. (2017) · Advances in experimental medicine and biology · doi:10.1007/978-981-10-5203-3_1 · Cited by 873 · see citing works
Circular RNAs: analysis, expression and potential functions
Barrett, S. P., & Salzman, J. (2016) · Development · doi:10.1242/dev.128074 · Cited by 859 · see citing works
“…N T Two key examples of highly expressed, neural-specific and conserved circRNAs that exhibit developmentally regulated expression are the circRNAs derived from the RIMS2 gene (circRIMS2) and the circRNA derived from the CDR1 antisense locus (ciRS-7) (Rybak-Wolf et al., 2015; Venø et al., 2015).”
BackgroundMethodResultInfluentialTranslation and functional roles of circular RNAs in human cancer
Lei, M., Zheng, G., Ning, Q., Zheng, J., & Dong, D. (2020) · Molecular Cancer · doi:10.1186/s12943-020-1135-7 · Cited by 814 · see citing works
Structure and Degradation of Circular RNAs Regulate PKR Activation in Innate Immunity
Liu, C., Li, X., Nan, F., Jiang, S., Gao, X., Guo, S.-K., Xue, W., Cui, Y., Dong, K., Ding, H., et al. (2019) · Cell · doi:10.1016/j.cell.2019.03.046 · Cited by 800 · see citing works
“In this regard, circRNAs can accumulate to relatively high levels in cells that have slow division rates (Rybak-Wolf et al., 2015; Zhang et al., 2016b).”
Circular RNA Expression: Its Potential Regulation and Function
Salzman, J. (2016) · Trends in Genetics · doi:10.1016/j.tig.2016.03.002 · Cited by 805 · see citing works
Circular RNA and its mechanisms in disease: From the bench to the clinic
Han, B., Chao, J., & Yao, H. (2018) · Pharmacology & Therapeutics · doi:10.1016/j.pharmthera.2018.01.010 · Cited by 784 · see citing works
“circRNA expression appears to be conserved across mammals (Barrett & Salzman, 2016), and some are even conserved in evolutionarily distant Drosophila (Rybak-Wolf et al., 2015).”
BackgroundInfluentialCircular RNAs: Promising Biomarkers for Human Diseases
Zhang, Z., Yang, T., & Xiao, J. (2018) · EBioMedicine · doi:10.1016/j.ebiom.2018.07.036 · Cited by 776 · see citing works
“Additionally, the abundance of circRNA is higher in brain compared to other organs [36]; and the population of circRNAs circulating in the blood is also very prevalent, attributed to their structure with high stability [37].”
BackgroundCircular RNA cSMARCA5 inhibits growth and metastasis in hepatocellular carcinoma
Yu, J., Xu, Q., Wang, Z., Yang, Y., Zhang, L., Ma, J., Sun, S., Yang, F., & Zhou, W. (2018) · Journal of Hepatology · doi:10.1016/j.jhep.2018.01.012 · Cited by 763 · see citing works
“derived from pre-mRNAs,[10, 11, 27, 43] and circRNAs could be regulated by RNA-binding proteins [12, 43-46] post-transcriptionally, we assumed that cSMARCA5, but not mSMARCA5, was regulated by certain RNA-binding proteins post-transcriptionally in human HCC development.”
BackgroundEnuka, Y., Lauriola, M., Feldman, M. E., Sas-Chen, A., Ulitsky, I., & Yarden, Y. (2016) · Nucleic Acids Research · doi:10.1093/nar/gkv1367 · Cited by 757 · see citing works
“It should be noted, however, that another study analyzed P19 differentiated non-dividing cells and observed accumulation of circRNAs only after induction of the cells to neurons (12).”
BackgroundResultInfluentialZhang, M., Zhao, K., Xu, X., Yang, Y., Yan, S., Wei, P., Liu, H., Xu, J., Xiao, F., Zhou, H., et al. (2018) · Nature Communications · doi:10.1038/s41467-018-06862-2 · Cited by 737 · see citing works
Circular RNA identification based on multiple seed matching
Gao, Y., Zhang, J., & Zhao, F. (2017) · Briefings in Bioinformatics · doi:10.1093/bib/bbx014 · Cited by 703 · see citing works
Chen, J., Li, Y., Zheng, Q., Bao, C., He, J. G., Chen, B., Lyu, D., Zheng, B., Xu, Y., Long, Z., et al. (2016) · Cancer Letters · doi:10.1016/j.canlet.2016.12.006 · Cited by 686 · see citing works
Detecting circular RNAs: bioinformatic and experimental challenges
Szabo, L. A., & Salzman, J. (2016) · Nature Reviews Genetics · doi:10.1038/nrg.2016.114 · Cited by 684 · see citing works
“Current estimates suggest that the abundance of circRNA is approximately 2–4% of the total mRNA in cells and can be much higher in some cell types, such as platelets 3,6,21,22 .”
BackgroundMemczak, S., Papavasileiou, P., Peters, O., & Rajewsky, N. (2015) · PLoS ONE · doi:10.1371/journal.pone.0141214 · Cited by 639 · see citing works
“Further, as observed in other human samples, we find that most circRNAs are derived from protein coding exonic regions or 5’ UTR sequences (Fig 1c [20],[25]).”
BackgroundResultInfluentialSelf-citationThe Biogenesis of Nascent Circular RNAs
Zhang, Y., Xue, W., Li, X., Zhang, J., Chen, S., Zhang, J.-L., Yang, L., & Chen, L.-L. (2016) · Cell Reports · doi:10.1016/j.celrep.2016.03.058 · Cited by 643 · see citing works
“Many such circRNAs are upregulated during neurogenesis (Rybak-Wolf et al., 2015) and are more enriched in synaptogenesis than their linear counterparts (You et al., 2015).”
BackgroundResultInfluentialExosomal circRNAs: biogenesis, effect and application in human diseases
Wang, Y., Liu, J., Ma, J., Sun, T., Zhou, Q., Wang, W., Wang, G., Wu, P., Wang, H., Li, J., et al. (2019) · Molecular Cancer · doi:10.1186/s12943-019-1041-z · Cited by 637 · see citing works
“In addition to these encouraging advances, it is worthwhile to note that their high abundance, relative stability, and evolutionary conservation among species endow circRNAs with utility as potential biomarkers for many diseases, especially for cancers [25, 26].”
Coordinated circRNA Biogenesis and Function with NF90/NF110 in Viral Infection
Li, X., Liu, C., Xue, W., Zhang, Y., Jiang, S., Yin, Q.-F., Wei, J., Yao, R.-W., Yang, L. C., & Chen, L. (2017) · Molecular Cell · doi:10.1016/j.molcel.2017.05.023 · Cited by 629 · see citing works
“, 2015) was reported to suppress circRNA production (Ivanov et al., 2015; Rybak-Wolf et al., 2015).”
BackgroundInfluentialRETRACTED ARTICLE: CircHIPK3 promotes colorectal cancer growth and metastasis by sponging miR-7
Zeng, K., Chen, X., Xu, M., Liu, X., Hu, X., Xu, T., Sun, H., Pan, Y., He, B., & Wang, S. (2018) · Cell Death and Disease · doi:10.1038/s41419-018-0454-8 · Cited by 628 · see citing works
“Circular RNAs (circRNA) are highly conserved and stable covalently closed RNA transcripts generated by back-splicing of a single pre-mRNA with gene-regulatory potential 3,4 .”
BackgroundRetractedN6-Methyladenosine Modification Controls Circular RNA Immunity
Chen, Y. G., Chen, R., Ahmad, S., Verma, R., Kasturi, S. P., Amaya, L., Broughton, J. P., Kim, J., Cadena, C., Pulendran, B., et al. (2019) · Molecular Cell · doi:10.1016/j.molcel.2019.07.016 · Cited by 572 · see citing works
CircHIPK3 sponges miR‐558 to suppress heparanase expression in bladder cancer cells
Li, Y., Zheng, F., Xiao, X., Xie, F., Tao, D., Huang, C., Liu, D., Wang, M., Wang, L., Zeng, F., et al. (2017) · EMBO Reports · doi:10.15252/embr.201643581 · Cited by 559 · see citing works
Circbank: a comprehensive database for circRNA with standard nomenclature
Liu, M., Wang, Q., Shen, J., Yang, B. B., & Ding, X. (2019) · RNA Biology · doi:10.1080/15476286.2019.1600395 · Cited by 555 · see citing works
“CircRNAs were found to be expressed across various species including human, mouse, fly, worm, plant and yeast [3,5,28,29].”
BackgroundTargeting circular RNAs as a therapeutic approach: current strategies and challenges
He, A. T., Liu, J., Li, F., & Yang, B. B. (2021) · Signal Transduction and Targeted Therapy · doi:10.1038/s41392-021-00569-5 · Cited by 556 · see citing works
Circular RNAs: Biogenesis, Function and Role in Human Diseases
Greene, J. P., Baird, A., Brady, L., Lim, M. C. J., Gray, S. G., McDermott, R., & Finn, S. P. (2017) · Frontiers in Molecular Biosciences · doi:10.3389/fmolb.2017.00038 · Cited by 554 · see citing works
“It has been implicated in decreasing circRNA production by weakening and editing RNA duplexes which decreases the likelihood of circularization (Rybak-Wolf et al., 2015).”
BackgroundThe novel roles of circRNAs in human cancer
Shang, Q., Yang, Z. H., Jia, R., & Ge, S. (2019) · Molecular Cancer · doi:10.1186/s12943-018-0934-6 · Cited by 548 · see citing works
FUS affects circular RNA expression in murine embryonic stem cell-derived motor neurons
Errichelli, L., Modigliani, S. D., Laneve, P., Colantoni, A., Legnini, I., Capauto, D., Rosa, A., Santis, R. D., Scarfò, R., Peruzzi, G., et al. (2017) · Nature Communications · doi:10.1038/ncomms14741 · Cited by 541 · see citing works
Circular RNA in cardiovascular disease
Altesha, M., Ni, T. T., Khan, A., Liu, K., & Zheng, X. (2018) · Journal of Cellular Physiology · doi:10.1002/jcp.27384 · Cited by 520 · see citing works
An emerging function of circRNA-miRNAs-mRNA axis in human diseases
Rong, D., Sun, H., Li, Z., Liu, S., Dong, C., Fu, K., Tang, W., & Cao, H. (2017) · Oncotarget · doi:10.18632/oncotarget.19154 · Cited by 516 · see citing works
“However, some circRNAs expressions are on the contrary, for example, circRNAs including Rims2, Tulp4 and Elf2 were found to be the major isoform of multiple genes in brain tissues [17].”
BackgroundKramer, M. C., Liang, D., Tatomer, D. C., Gold, B., March, Z. M., Cherry, S. R., & Wilusz, J. E. (2015) · Genes & Development · doi:10.1101/gad.270421.115 · Cited by 494 · see citing works
“…and recent deep sequencing studies have expanded this observation to thousands of circular RNAs expressed across eukaryotes, including humans (Salzman et al. 2012; Jeck et al. 2013; Memczak et al. 2013; Guo et al. 2014; Conn et al. 2015; Kelly et al. 2015), mice (Memczak et al. 2013;…”
BackgroundSpatio-temporal regulation of circular RNA expression during porcine embryonic brain development
Venø, M. T., Hansen, T. B., Venø, S. T., Clausen, B. H., Grebing, M., Finsen, B. R., Holm, I. E., & Kjems, J. (2015) · Genome biology · doi:10.1186/s13059-015-0801-3 · Cited by 475 · see citing works
“expressed in human cortex, while in mouse it is almost exclusively located in the cerebellum [27].”
BackgroundResultSpecific expression and functions of circular RNAs
Mısır, S., Wu, N., & Yang, B. B. (2022) · Cell Death and Differentiation · doi:10.1038/s41418-022-00948-7 · Cited by 482 · see citing works
“The abundance of circRNAs is specific to cell types and tissues during development [7, 8].”
BackgroundInfluentialPatop, I. L., & Kadener, S. (2017) · Current Opinion in Genetics & Development · doi:10.1016/j.gde.2017.11.007 · Cited by 469 · see citing works
Self-citationKim, K. M., Abdelmohsen, K., Mustapić, M., Kapogiannis, D., & Gorospe, M. (2017) · Wiley Interdisciplinary Reviews - RNA · doi:10.1002/wrna.1413 · Cited by 456 · see citing works
Insights into circular RNA biology
Ebbesen, K. K., Hansen, T. B., & Kjems, J. (2016) · RNA Biology · doi:10.1080/15476286.2016.1271524 · Cited by 454 · see citing works
“However, impaired circRNA biogenesis could be caused by indirect effects of ADAR1.(10,18)”
BackgroundInfluentialA 360° view of circular RNAs: From biogenesis to functions
Wilusz, J. E. (2018) · Wiley Interdisciplinary Reviews - RNA · doi:10.1002/wrna.1478 · Cited by 438 · see citing works
Liang, D., Tatomer, D. C., Luo, Z., Wu, H., Yang, L. C., Chen, L., Cherry, S. R., & Wilusz, J. E. (2017) · Molecular Cell · doi:10.1016/j.molcel.2017.10.034 · Cited by 435 · see citing works
“It has instead been suggested that circular RNAs may help form large RNA-protein complexes, e.g., at neuronal synapses (Rybak-Wolf et al., 2015; You et al., 2015); be translated (Abe et al., 2015; Chen and Sarnow, 1995; Kramer et al., 2015; Legnini et al., 2017; Pamudurti et al., 2017; Yang et al.,…”
BackgroundThe emerging roles and functions of circular RNAs and their generation
Yu, C., & Kuo, H. (2019) · Journal of Biomedical Science · doi:10.1186/s12929-019-0523-z · Cited by 431 · see citing works
The emerging landscape of circular RNA in life processes
Qu, S., Zhong, Y., Shang, R., Zhang, X., Song, W., Kjems, J., & Li, H. (2016) · RNA Biology · doi:10.1080/15476286.2016.1220473 · Cited by 421 · see citing works
“CircRNAs can be generated from any region of the genome, and all result in a great diversity of lengths.(17-20,30,35,45,46) The”
BackgroundCheng, Z., Yu, C., Cui, S., Wang, H., Jin, H., Wang, C., Li, B., Qin, M., Yang, C. G., He, J., et al. (2019) · Nature Communications · doi:10.1038/s41467-019-11162-4 · Cited by 418 · see citing works
CircRNAs and cancer: Biomarkers and master regulators
Arnaiz, E., Solé, C., Manterola, L., Iparraguirre, L., Otaegui, D., & Lawrie, C. H. (2018) · Seminars in Cancer Biology · doi:10.1016/j.semcancer.2018.12.002 · Cited by 408 · see citing works
Biogenesis, identification, and function of exonic circular RNAs
Chen, I., Chen, C., & Chuang, T. (2015) · Wiley Interdisciplinary Reviews - RNA · doi:10.1002/wrna.1294 · Cited by 397 · see citing works
Circles reshaping the RNA world: from waste to treasure
Liu, J., Liu, T., Wang, X., & He, A. (2017) · Molecular Cancer · doi:10.1186/s12943-017-0630-y · Cited by 397 · see citing works
“and intensive accumulation in neural tissues [68].”
The bioinformatics toolbox for circRNA discovery and analysis
Chen, L., Wang, C., Sun, H., Wang, J., Liang, Y., Wang, Y., & Wong, G. (2020) · Briefings in Bioinformatics · doi:10.1093/bib/bbaa001 · Cited by 394 · see citing works
“One study applied BSJ read and normal splicing junction read ratio (named circular-to-linear ratio, CLR) to represent the ratio of circRNA and linear RNA to obtain an overall expression value [93].”
BackgroundA map of human circular RNAs in clinically relevant tissues
Maass, P. G., Glažar, P., Memczak, S., Dittmar, G. A. G., Hollfinger, I., Schreyer, L., Sauer, A. V., Toka, O., Aiuti, A., Luft, F. C., et al. (2017) · Journal of Molecular Medicine · doi:10.1007/s00109-017-1582-9 · Cited by 388 · see citing works
Self-citationThe Diversity of Long Noncoding RNAs and Their Generation
Wu, H., Yang, L. C., & Chen, L. (2017) · Trends in Genetics · doi:10.1016/j.tig.2017.05.004 · Cited by 378 · see citing works
CircRNAs: role in human diseases and potential use as biomarkers
Verduci, L., Tarcitano, E., Strano, S., Yarden, Y., & Blandino, G. (2021) · Cell Death and Disease · doi:10.1038/s41419-021-03743-3 · Cited by 377 · see citing works
Dube, U., Del-Aguila, J. L., Li, Z., Budde, J. P., Jiang, S., Hsu, S., Ibanez, L., Fernandez, M. V., Farias, F., Norton, J., et al. (2019) · Nature Neuroscience · doi:10.1038/s41593-019-0501-5 · Cited by 345 · see citing works
Circular RNAs Co-Precipitate with Extracellular Vesicles: A Possible Mechanism for circRNA Clearance
Lasda, E. L., & Parker, R. (2016) · PLoS ONE · doi:10.1371/journal.pone.0148407 · Cited by 375 · see citing works
CircRNA accumulation in the aging mouse brain
Gruner, H. N., Cortés-López, M., Cooper, D. A., Bauer, M. J., & Miura, P. (2016) · Scientific Reports · doi:10.1038/srep38907 · Cited by 366 · see citing works
Comprehensive characterization of tissue-specific circular RNAs in the human and mouse genomes
Xia, S., Feng, J. Q., Lei, L., Hu, J., Xia, L., Wang, J., Xiang, Y., Liu, L., Zhong, S., Han, L., et al. (2016) · Briefings in Bioinformatics · doi:10.1093/bib/bbw081 · Cited by 362 · see citing works
“We allowed 2 bp window while comparing the backsplice sites as previously described [2].”
BackgroundMethodCircular RNAs open a new chapter in cardiovascular biology
Aufiero, S., Reckman, Y. J., Pinto, Y. M., & Creemers, E. E. (2019) · Nature Reviews Cardiology · doi:10.1038/s41569-019-0185-2 · Cited by 353 · see citing works
Review on circular RNAs and new insights into their roles in cancer
Tang, X., Ren, H., Guo, M., Qian, J., Yang, Y., & Gu, C. (2021) · Computational and Structural Biotechnology Journal · doi:10.1016/j.csbj.2021.01.018 · Cited by 353 · see citing works
Screening for functional circular RNAs using the CRISPR–Cas13 system
Li, S., Li, X., Xue, W., Zhang, L., Yang, L.-Z., Cao, S.-M., Lei, Y.-N., Liu, C.-X., Guo, S.-K., Shan, L., et al. (2020) · Nature Methods · doi:10.1038/s41592-020-01011-4 · Cited by 355 · see citing works
CircNet: a database of circular RNAs derived from transcriptome sequencing data
Liu, Y., Li, J., Sun, C.-H., Andrews, E. H., Chao, R.-F., Lin, F.-M., Weng, S.-L., Hsu, S., Huang, C., Cheng, C., et al. (2015) · Nucleic Acids Research · doi:10.1093/nar/gkv940 · Cited by 343 · see citing works
“CircRNAs functional correlation with brain function, synaptic plasticity (26,27) and fetal development (28) has recently been reported.”
BackgroundMolecular roles and function of circular RNAs in eukaryotic cells
Holdt, L. M., Kohlmaier, A., & Teupser, D. (2017) · Cellular and Molecular Life Sciences · doi:10.1007/s00018-017-2688-5 · Cited by 341 · see citing works
“CircRNAs have been found to be particularly enriched in neuronal tissues of different organisms ranging from Dros‐ ophila to humans [29, 30, 44, 77, 131].”
BackgroundInfluentialDenzler, R., McGeary, S. E., Title, A. C., Agarwal, V., Bartel, D. P., & Stoffel, M. (2016) · Molecular Cell · doi:10.1016/j.molcel.2016.09.027 · Cited by 340 · see citing works
“However, very few other circRNAs have more miRNA-binding sites than expected by chance (Guo et al., 2014; Rybak-Wolf et al., 2015), which brings the focus back to linear transcripts as a more abundant source of potential ceRNA candidates.”
BackgroundCircACC1 Regulates Assembly and Activation of AMPK Complex under Metabolic Stress
Li, Q., Wang, Y., Wu, S., Zhou, Z., Ding, X., Shi, R., Thorne, R. F., Zhang, X. D., Hu, W., & Wu, M. (2019) · Cell Metabolism · doi:10.1016/j.cmet.2019.05.009 · Cited by 339 · see citing works
The circular RNA circBIRC6 participates in the molecular circuitry controlling human pluripotency
Yu, C.-Y., Li, T.-C., Wu, Y.-Y., Yeh, C.-H., Chiang, W., Chuang, C.-Y., & Kuo, H.-C. (2017) · Nature Communications · doi:10.1038/s41467-017-01216-w · Cited by 336 · see citing works
Dou, Y., Cha, D. J., Franklin, J. L., Higginbotham, J. N., Jeppesen, D. K., Weaver, A. M., Prasad, N., Levy, S., Coffey, R. J., Patton, J. G., et al. (2016) · Scientific Reports · doi:10.1038/srep37982 · Cited by 330 · see citing works
Circular RNA mediates cardiomyocyte death via miRNA-dependent upregulation of MTP18 expression
Wang, K., Gan, T.-Y., Li, N., Liu, C.-Y., Zhou, L., Gao, J.-N., Chen, C., Yan, K.-W., Ponnusamy, M., Zhang, Y.-H., et al. (2017) · Cell Death and Differentiation · doi:10.1038/cdd.2017.61 · Cited by 324 · see citing works
Chen, X., Mao, R., Su, W., Yang, X., Geng, Q., Guo, C., Wang, Z., Wang, J., Kresty, L. A., Beer, D. G., et al. (2019) · Autophagy · doi:10.1080/15548627.2019.1634945 · Cited by 322 · see citing works
Exosomal noncoding RNAs in Glioma: biological functions and potential clinical applications
Cheng, J., Meng, J., Zhu, L., & Peng, Y. (2020) · Molecular Cancer · doi:10.1186/s12943-020-01189-3 · Cited by 317 · see citing works
Single-cell and spatial transcriptomics: deciphering brain complexity in health and disease
Piwecka, M., Rajewsky, N., & Rybak-Wolf, A. (2023) · Nature Reviews Neurology · doi:10.1038/s41582-023-00809-y · Cited by 320 · see citing works
Self-citationThe pro-metastasis effect of circANKS1B in breast cancer
Zeng, K., He, B., Yang, B. B., Xu, T., Chen, X., Xu, M., Liu, X., Sun, H., Pan, Y., & Wang, S. (2018) · Molecular Cancer · doi:10.1186/s12943-018-0914-x · Cited by 319 · see citing works
Lessons from non-canonical splicing
Sibley, C. R., Blázquez, L., & Ule, J. (2016) · Nature Reviews Genetics · doi:10.1038/nrg.2016.46 · Cited by 312 · see citing works
Structured elements drive extensive circular RNA translation
Chen, C., Cheng, R., Demeter, J., Chen, J., Weingarten-Gabbay, S., Jiang, L., Snyder, M. P., Weissman, J. S., Segal, E., Jackson, P. K., et al. (2021) · Molecular Cell · doi:10.1016/j.molcel.2021.07.042 · Cited by 316 · see citing works
“Because circRNAs are expressed in a tissue-specific and cell line-specific manner (Rybak-Wolf et al., 2015), to accurately estimate the circORF discovery rate (the number of circORFs detected in each dataset), we consider the IRES-containing circRNAs expressed in the corresponding cell line as the denominator.”
BackgroundBiogenesis and Functions of Circular RNAs Come into Focus
Xiao, M., Ai, Y., & Wilusz, J. E. (2020) · Trends in Cell Biology · doi:10.1016/j.tcb.2019.12.004 · Cited by 315 · see citing works
Lu, Q., Liu, T., Feng, H., Yang, R., Zhao, X., Chen, W., Jiang, B., Qin, H., Guo, X., Liu, M., et al. (2019) · Molecular Cancer · doi:10.1186/s12943-019-1040-0 · Cited by 312 · see citing works
“Salient features of circRNAs include significant stability, high abundance, evolutionary conservation, and tissue-specific expression [9, 10].”
BackgroundCircular RNA: An emerging non-coding RNA as a regulator and biomarker in cancer
Chen, B., & Huang, S. (2018) · Cancer Letters · doi:10.1016/j.canlet.2018.01.011 · Cited by 308 · see citing works
Biogenesis and Regulatory Roles of Circular RNAs
Yang, L. C., Wilusz, J. E., & Chen, L. (2022) · Annual Review of Cell and Developmental Biology · doi:10.1146/annurev-cellbio-120420-125117 · Cited by 303 · see citing works
CircNT5E Acts as a Sponge of miR-422a to Promote Glioblastoma Tumorigenesis
Wang, R., Zhang, S., Chen, X., Li, N., Li, J., Jia, R., Pan, Y., & Liang, H. (2018) · Cancer Research · doi:10.1158/0008-5472.can-18-0532 · Cited by 298 · see citing works
“Two important studies revealed that the RNA-editing enzyme ADAR1 is involved in circRNA biogenesis and that its knockdown may significantly upregulate circRNA expression in human HEK293 cells and SH-SY5Y cells (41, 45).”
BackgroundResultChen, G., Shi, Y., Liu, M., & Sun, J. (2018) · Cell Death and Disease · doi:10.1038/s41419-017-0204-3 · Cited by 291 · see citing works
Circular RNAs: a new frontier in the study of human diseases
Chen, Y., Li, C., Tan, C., & Liu, X. (2016) · Journal of Medical Genetics · doi:10.1136/jmedgenet-2016-103758 · Cited by 293 · see citing works
“Rybak-Wolf et al 42 examined 29 human/mouse RNA sequencing datasets from dissected brain tissues or neuronal-differentiated cell lines.”
BackgroundComprehensive identification of internal structure and alternative splicing events in circular RNAs
Gao, Y., Wang, J., Zheng, Y., Zhang, J., Chen, S., & Zhao, F. (2016) · Nature Communications · doi:10.1038/ncomms12060 · Cited by 292 · see citing works
Circular RNAs in immune responses and immune diseases
Chen, X., Yang, T., Wang, W., Xi, W., Zhang, T., Li, Q., Yang, A., & Wang, T. (2019) · Theranostics · doi:10.7150/thno.29678 · Cited by 291 · see citing works
Circular RNA: an emerging key player in RNA world
Meng, X., Li, X., Zhang, P., Wang, J., Zhou, Y., & Chen, M. (2016) · Briefings in Bioinformatics · doi:10.1093/bib/bbw045 · Cited by 290 · see citing works
Role of circular RNAs in brain development and CNS diseases
Mehta, S. L., Dempsey, R. J., & Vemuganti, R. (2020) · Progress in Neurobiology · doi:10.1016/j.pneurobio.2020.101746 · Cited by 281 · see citing works
“A uthor M anuscript A uthor M anuscript A uthor M anuscript A uthor M anuscript PRR11 proline-rich protein 11 RBPs RNA binding proteins RNA-FISH RNA fluorescence in situ hybridization ROS reactive oxygen species SCI spinal cord injury SIRT1 Sirtuin 1 SMN1 survival motor neuron 1 SOX13 SRY-Box 13 SRSF1 serine and argin…”
BackgroundInfluentialDong, R., Ma, X.-K., Li, G., & Yang, L. C. (2018) · Genomics Proteomics & Bioinformatics · doi:10.1016/j.gpb.2018.08.001 · Cited by 275 · see citing works
“Although generally expressed at low levels, circRNAs are highly enriched in brains/neurons [18,23,31].”
BackgroundInfluentialCircular RNAs: A Novel Class of Functional RNA Molecules with a Therapeutic Perspective
Santer, L., Bär, C., & Thum, T. (2019) · Molecular Therapy · doi:10.1016/j.ymthe.2019.07.001 · Cited by 277 · see citing works
“ADAR expression level negatively correlates with several circRNAs.(30,31) More recently, it was described that the RNA helicase DHX9 (DExH-Box Helicase 9), which binds double-stranded RNA (dsRNA), is involved in the”
BackgroundCircular RNA BCRC-3 suppresses bladder cancer proliferation through miR-182-5p/p27 axis
Xie, F., Li, Y., Wang, M., Huang, C., Tao, D., Zheng, F., Zhang, H., Zeng, F., Xiao, X., & Jiang, G. (2018) · Molecular Cancer · doi:10.1186/s12943-018-0892-z · Cited by 274 · see citing works
circPTN sponges miR-145-5p/miR-330-5p to promote proliferation and stemness in glioma
Chen, J., Chen, T., Zhu, Y., Li, Y., Zhang, Y., Wang, Y., Li, X., Xie, X., Wang, J., Huang, M., et al. (2019) · Journal of Experimental & Clinical Cancer Research · doi:10.1186/s13046-019-1376-8 · Cited by 271 · see citing works
- Authors
- Rybak-Wolf, A., Stottmeister, C., Glažar, P., Jens, M., Pino, N., Giusti, S., Hanan, M., Behm, M., Bartok, O., Ashwal-Fluss, R., Herzog, M., Schreyer, L., Papavasileiou, P., Ivanov, A., Öhman, M., Refojo, D., Kadener, S., & Rajewsky, N.
- Affiliations
- Max Delbrück Center (DE)
- Max Planck Institute of Psychiatry (DE)
- Hebrew University of Jerusalem (IL)
- Stockholm University (SE)
- Corresponding author
- Rajewsky, Nikolaus
- ORCID
- Venue
- Molecular Cell
- Publisher
- Elsevier BV
- Published
- 2015-06
- Volume
- 58
- Issue
- 5
- Pages
- 870-885
- ISSN
- 1097-2765 (ISSN-L)
- OpenAlex
- W1991082489
- Semantic Scholar
- 2d5cc6120582eee013b4aab9138fa48d35f384f1
- Cited by
- 2,423
- References
- 40
- Citations by year
- 2026: 68 · 2025: 143 · 2024: 238 · 2023: 246 · 2022: 312 · 2021: 358 · 2020: 344 · 2019: 284 · 2018: 203 · 2017: 122 · 2016: 74 · 2015: 23 · 2014: 1 · 2013: 1 · 2012: 1
- FWCI
- 61.05
- Type
- journal article
- Language
- en
- Open access
- bronze
- doi.org
- Licence
- Locations
- Molecular Cell (publishedVersion)
- PubMed (publishedVersion)
- Americanae (AECID Library) (publishedVersion, other-oa)
- MDC Repository (Max-Delbrueck-Center for Molecular Medicine) (submittedVersion)
- MPG.PuRe (Max Planck Society) (submittedVersion)
- LA Referencia (Red Federada de Repositorios Institucionales de Publicaciones Científicas) (submittedVersion, cc-by-nc-nd)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Circular RNAs in diseases
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › RNA Research and Splicing
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › RNA regulation and disease
- Keywords
- circular RNA, mammalian brain, neuronal differentiation, synapses, ADAR1, RNA editing, Drosophila brain, circRNA biomarkers
- MeSH terms
- RNA, Circular, Animals, Base Sequence, Brain, Cell Line, Drosophila melanogaster, Humans, Molecular Sequence Data, Organ Specificity, RNA, RNA, Messenger, Synapses, Sequence Analysis, DNA, Mice, Neurogenesis
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