Situating Ecology as a Big-Data Science: Current Advances, Challenges, and Solutions
Abstract
Ecology has joined a world of big data. Two complementary frameworks define big data: data that exceed the analytical capacities of individuals or disciplines or the “Four Vs” axes of volume, variety, veracity, and velocity. Variety predominates in ecoinformatics and limits the scalability of ecological science. Volume varies widely. Ecological velocity is low but growing as data throughput and societal needs increase. Ecological big-data systems include in situ and remote sensors, community data resources, biodiversity databases, citizen science, and permanent stations. Technological solutions include the development of open code- and data-sharing platforms, flexible statistical models that can handle heterogeneous data and sources of uncertainty, and cloud-computing delivery of high-velocity computing to large-volume analytics. Cultural solutions include training targeted to early and current scientific workforce and strengthening collaborations among ecologists and data scientists. The broader goal is to maximize the power, scalability, and timeliness of ecological insights and forecasting.
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Central challenges to efficient data analysis are the sheer volume of data generated by modern collection methods and the heterogeneous nature of many ecological datasets, which preclude the use of simple automated analysis techniques.
“Central challenges to efficient data analysis are the sheer volume of data generated by modern collection methods and the heterogeneous nature of many ecological datasets, which preclude the use of simple automated analysis techniques26.”
From Perspectives in machine learning for wildlife conservation (2022) · cites this paper as [26]
Cites
The FAIR Guiding Principles for scientific data management and stewardship
Wilkinson, M. D., Dumontier, M., Aalbersberg, I. J., Appleton, G., Axton, M., Baak, A., Blomberg, N., Boiten, J.-W., da Silva Santos, L. B., Bourne, P. E., et al. (2016) · Scientific Data · doi:10.1038/sdata.2016.18 · Cited by 18,423 · see citing works
The NIST Definition of Cloud Computing
Mell, P., & Grance, T. (2011) · doi:10.6028/nist.sp.800-145 · Cited by 15,338 · see citing works
High-Resolution Global Maps of 21st-Century Forest Cover Change
Hansen, M. C., Potapov, P. V., Moore, R., Hancher, M., Turubanova, S. A., Tyukavina, A., Thau, D., Stehman, S. V., Goetz, S. J., Loveland, T. R., et al. (2013) · Science · doi:10.1126/science.1244693 · Cited by 11,704 · see citing works
Novel methods improve prediction of species’ distributions from occurrence data
Elith*, J., H. Graham*, C., P. Anderson, R., Dudík, M., Ferrier, S., Guisan, A., J. Hijmans, R., Huettmann, F., R. Leathwick, J., Lehmann, A., et al. (2006) · Ecography · doi:10.1111/j.2006.0906-7590.04596.x · Cited by 9,088 · see citing works
(2011) · Cited by 5,203 · see citing works
Jupyter Notebooks – a publishing format for reproducible computational workflows
Kluyver, T. A., Ragan-Kelley, B., Fernando, P., Granger, B., Bussonnier, M., Frederic, J., Kelley, K., Hamrick, J. B., Grout, J., Corlay, S., et al. (2016) · IOS Press eBooks · doi:10.3233/978-1-61499-649-1-87 · Cited by 3,191 · see citing works
XSEDE: Accelerating Scientific Discovery
Towns, J. W., Cockerill, T. M., Dahan, M., Foster, I. T., Gaither, K., Grimshaw, A. S., Hazlewood, V., Lathrop, S. A., Lifka, D. A., Peterson, G. D., et al. (2014) · Computing in Science & Engineering · doi:10.1109/mcse.2014.80 · Cited by 3,114 · see citing works
The No-U-turn sampler: adaptively setting path lengths in Hamiltonian Monte CarloPreprint
Homan, M. D., & Gelman, A. (2014) · arXiv (Cornell University) · Cited by 2,964 · see citing works
Chen, M., Mao, S., & Liu, Y. (2014) · Mobile Networks and Applications · doi:10.1007/s11036-013-0489-0 · Cited by 2,913 · see citing works
TRY – a global database of plant traits
KATTGE, J., DÍAZ, S., LAVOREL, S., PRENTICE, I. C., LEADLEY, P., BÖNISCH, G., GARNIER, E., WESTOBY, M., REICH, P. B., WRIGHT, I. J., et al. (2011) · Global Change Biology · doi:10.1111/j.1365-2486.2011.02451.x · Cited by 2,638 · see citing works
The No-U-Turn Sampler: Adaptively Setting Path Lengths in Hamiltonian Monte CarloPreprint
Hoffman, M. D., & Gelman, A. (2011) · arXiv (Cornell University) · doi:10.48550/arxiv.1111.4246 · Cited by 2,575 · see citing works
eBird: A citizen-based bird observation network in the biological sciences
Sullivan, B. L., Wood, C. L., Iliff, M. J., Bonney, R. E., Fink, D., & Kelling, S. (2009) · Biological Conservation · doi:10.1016/j.biocon.2009.05.006 · Cited by 2,017 · see citing works
KBase: The United States Department of Energy Systems Biology Knowledgebase
(2018) · doi:10.1038/nbt.4163 · Cited by 1,624 · see citing works
Lightweight unmanned aerial vehicles will revolutionize spatial ecology
Anderson, K., & Gaston, K. J. (2013) · Frontiers in Ecology and the Environment · doi:10.1890/120150 · Cited by 1,427 · see citing works
Big Data: Astronomical or Genomical?
Stephens, Z. D., Lee, S. Y., Faghri, F., Campbell, R. H., Zhai, C., Efron, M. J., Iyer, R., Schatz, M. C., Sinha, S., & Robinson, G. E. (2015) · PLOS Biology · doi:10.1371/journal.pbio.1002195 · Cited by 1,340 · see citing works
Approximate Bayesian Computation in Evolution and Ecology
Beaumont, M. (2010) · Annual Review of Ecology Evolution and Systematics · doi:10.1146/annurev-ecolsys-102209-144621 · Cited by 1,117 · see citing works
Heath, T., Bizer, C., & Hendler, J. (2011) · Cited by 1,057 · see citing works
Assessing data quality in citizen science
Kosmala, M., Wiggins, A., Swanson, A., & Simmons, B. D. (2016) · Frontiers in Ecology and the Environment · doi:10.1002/fee.1436 · Cited by 992 · see citing works
Response time in man-computer conversational transactions
Miller, R. B. (1968) · Proceedings of the December 9-11, 1968, fall joint computer conference, part I on - AFIPS '68 (Fall, part I) · doi:10.1145/1476589.1476628 · Cited by 942 · see citing works
Big data and the future of ecology
Hampton, S. E., Strasser, C. A., Tewksbury, J. J., Gram, W. K., Budden, A. E., Batcheller, A. L., Duke, C. S., & Porter, J. H. (2013) · Frontiers in Ecology and the Environment · doi:10.1890/120103 · Cited by 930 · see citing works
Why environmental scientists are becoming Bayesians
Clark, J. S. (2004) · Ecology Letters · doi:10.1111/j.1461-0248.2004.00702.x · Cited by 863 · see citing works
Machine Learning Methods Without Tears: A Primer for Ecologists
Olden, J. D., Lawler, J. J., & Poff, N. L. (2008) · The Quarterly Review of Biology · doi:10.1086/587826 · Cited by 823 · see citing works
Contribution of citizen science towards international biodiversity monitoring
Chandler, M., See, L., Copas, K., Bonde, A. M., López, B., Danielsen, F., Legind, J. K., Masinde, S., Miller-Rushing, A., Newman, G., et al. (2017) · Biological Conservation · doi:10.1016/j.biocon.2016.09.004 · Cited by 798 · see citing works
Bayesian Computing with INLA: A Review
Rue, H., Riebler, A., Sørbye, S. H., Illian, J. B., Simpson, D. P., & Lindgren, F. K. (2017) · Annual Review of Statistics and Its Application · doi:10.1146/annurev-statistics-060116-054045 · Cited by 737 · see citing works
Lynch, C. A. (2008) · Nature · doi:10.1038/455028a · Cited by 707 · see citing works
Howe, D. G., Costanzo, M. C., Fey, P., Gojobori, T., Hannick, L. I., Hide, W., Hill, D. P., Kania, R., Schaeffer, M. L., Pierre, S. S., et al. (2008) · Nature · doi:10.1038/455047a · Cited by 695 · see citing works
The Future of Species Under Climate Change: Resilience or Decline?
Moritz, C. C., & Agudo, R. (2013) · Science · doi:10.1126/science.1237190 · Cited by 683 · see citing works
Observing terrestrial ecosystems and the carbon cycle from space
SCHIMEL, D. S., Pavlick, R., Fisher, J. B., Asner, G. P., Saatchi, S. S., Townsend, P. A., Miller, C. E., Frankenberg, C., Hibbard, K. A., & Cox, P. M. (2014) · Global Change Biology · doi:10.1111/gcb.12822 · Cited by 598 · see citing works
Use of digital webcam images to track spring green-up in a deciduous broadleaf forest
Richardson, A. D., Jenkins, J. P., BRASWELL, B. H., Hollinger, D. Y., Ollinger, S. V., & Smith, M.-L. (2007) · Oecologia · doi:10.1007/s00442-006-0657-z · Cited by 596 · see citing works
Iterative near-term ecological forecasting: Needs, opportunities, and challenges
Dietze, M. C., Fox, A. M., Beck‐Johnson, L. M., Betancourt, J. L., Hooten, M. B., Jarnevich, C. S., Keitt, T. H., Kenney, M. A., Laney, C., Larsen, L. G., et al. (2018) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1710231115 · Cited by 592 · see citing works
Addition of multiple limiting resources reduces grassland diversity
Harpole, W. S., Sullivan, L. L., Lind, E. M., Firn, J. L., Adler, P. B., Borer, E. T., Chase, J. M., Fay, P. A., Hautier, Y., Hillebrand, H., et al. (2016) · Nature · doi:10.1038/nature19324 · Cited by 581 · see citing works
Multidimensional biases, gaps and uncertainties in global plant occurrence information
Meyer, C., Weigelt, P., & Kreft, H. (2016) · Ecology Letters · doi:10.1111/ele.12624 · Cited by 580 · see citing works
Realising the full potential of citizen science monitoring programs
TULLOCH, A. I. T., Possingham, H. P., Joseph, L. N., Szabo, J. K., & Martin, T. G. (2013) · Biological Conservation · doi:10.1016/j.biocon.2013.05.025 · Cited by 577 · see citing works
Cressie, N., Calder, C. A., Clark, J. S., Hoef, J. M. V., & Wikle, C. K. (2009) · Ecological Applications · doi:10.1890/07-0744.1 · Cited by 541 · see citing works
Machine Learning: A Bayesian and Optimization Perspective
Theodoridis, S. (2015) · Cited by 524 · see citing works
The case for cloud computing in genome informatics
Stein, L. (2010) · Genome biology · doi:10.1186/gb-2010-11-5-207 · Cited by 522 · see citing works
Ascough, J. C., Maier, H. R., Ravalico, J. K., & Strudley, M. W. (2008) · Ecological Modelling · doi:10.1016/j.ecolmodel.2008.07.015 · Cited by 520 · see citing works
Freifeld, C. C., Mandl, K. D., Reis, B. Y., & Brownstein, J. S. (2007) · Journal of the American Medical Informatics Association · doi:10.1197/jamia.m2544 · Cited by 504 · see citing works
Tweet Analysis for Real-Time Event Detection and Earthquake Reporting System Development
Sakaki, T., Okazaki, M., & Matsuo, Y. (2012) · IEEE Transactions on Knowledge and Data Engineering · doi:10.1109/tkde.2012.29 · Cited by 502 · see citing works
Attribution of extreme rainfall from Hurricane Harvey, August 2017
van Oldenborgh, G. J., van der Wiel, K., Sebastian, A., Singh, R., Arrighi, J., Otto, F. E. L., Haustein, K., Li, S., Vecchi, G. A., & Cullen, H. M. (2017) · Environmental Research Letters · doi:10.1088/1748-9326/aa9ef2 · Cited by 483 · see citing works
Shedding Light on the Dark Data in the Long Tail of Science
Heidorn, P. B. (2008) · Library trends · doi:10.1353/lib.0.0036 · Cited by 470 · see citing works
Assessing the present and future probability of Hurricane Harvey’s rainfall
Emanuel, K. (2017) · Proceedings of the National Academy of Sciences of the United States of America · doi:10.1073/pnas.1716222114 · Cited by 463 · see citing works
European Vegetation Archive (EVA): an integrated database of European vegetation plots
Chytrý, M., Hennekens, S. M., Jiménez‐Alfaro, B., Knollová, I., Dengler, J., Jansen, F., Landucci, F., Schaminée, J. H. J., Aćić, S., Agrillo, E., et al. (2015) · Applied Vegetation Science · doi:10.1111/avsc.12191 · Cited by 461 · see citing works
Ecoinformatics: supporting ecology as a data-intensive science
Michener, W. K., & Jones, M. B. (2012) · Trends in Ecology & Evolution · doi:10.1016/j.tree.2011.11.016 · Cited by 458 · see citing works
The Neotoma Paleoecology Database, a multiproxy, international, community-curated data resource
Williams, J. W., Grimm, E. C., Blois, J. L., Charles, D. F., Davis, E., Goring, S. J., Graham, R. W., Smith, A. J., Anderson, M., Arroyo‐Cabrales, J., et al. (2018) · Quaternary Research · doi:10.1017/qua.2017.105 · Cited by 435 · see citing works
Self-citationBiodiversity informatics: managing and applying primary biodiversity data
Soberón, J. M., & Peterson, A. T. (2004) · Philosophical Transactions of the Royal Society B Biological Sciences · doi:10.1098/rstb.2003.1439 · Cited by 433 · see citing works
Functional trait space and the latitudinal diversity gradient
Lamanna, C. A., Blonder, B. W., Violle, C., Kraft, N. J. B., Sandel, B., Šímová, I., Donoghue, J. C., Svenning, J., McGill, B. J., Boyle, B. L., et al. (2014) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1317722111 · Cited by 430 · see citing works
Foster, I. T. (2005) · Science · doi:10.1126/science.1110411 · Cited by 421 · see citing works
Data-intensive science applied to broad-scale citizen science
Hochachka, W. M., Fink, D., Hutchinson, R., Sheldon, D. R., Wong, W., & Kelling, S. (2011) · Trends in Ecology & Evolution · doi:10.1016/j.tree.2011.11.006 · Cited by 412 · see citing works
Community structure and diversity of tropical forest mammals: data from a global camera trap network
Ahumada, J., Silva, C. E. F. E., Gajapersad, K., Hallam, C., Hurtado, J., Martin, E. H., McWilliam, A., Mugerwa, B., O’Brien, T., Rovero, F., et al. (2011) · Philosophical Transactions of the Royal Society B Biological Sciences · doi:10.1098/rstb.2011.0115 · Cited by 370 · see citing works
Undefined By Data: A Survey of Big Data DefinitionsPreprint
Ward, J. S., & Barker, A. (2013) · arXiv (Cornell University) · doi:10.48550/arxiv.1309.5821 · Cited by 356 · see citing works
High-Frequency Trading: A Practical Guide to Algorithmic Strategies and Trading Systems
Aldridge, I. (2009) · Cited by 352 · see citing works
The Global Index of Vegetation‐Plot Databases (GIVD): a new resource for vegetation science
Dengler, J., Jansen, F., Glöckler, F., Peet, R. K., Cáceres, M. D., Chytrý, M., Ewald, J., Oldeland, J., López‐González, G., Finckh, M., et al. (2011) · Journal of Vegetation Science · doi:10.1111/j.1654-1103.2011.01265.x · Cited by 351 · see citing works
Geospatial Cyberinfrastructure: Past, present and future
Yang, C. P., Raskin, R. G., Goodchild, M. F., & GAHEGAN, M. N. (2010) · Computers Environment and Urban Systems · doi:10.1016/j.compenvurbsys.2010.04.001 · Cited by 351 · see citing works
The AmeriFlux network: A coalition of the willing
Novick, K. A., Biederman, J. A., Desai, A. R., Litvak, M. E., MOORE, D. J. P., Scott, R. L., & Torn, M. S. (2017) · Agricultural and Forest Meteorology · doi:10.1016/j.agrformet.2017.10.009 · Cited by 350 · see citing works
Gomez-Villa, A., Salazar, A., & Vargas‐Bonilla, J. F. (2017) · Ecological Informatics · doi:10.1016/j.ecoinf.2017.07.004 · Cited by 350 · see citing works
"Big Data" : big gaps of knowledge in the field of internet science
Snijders, C. C. P., Matzat, U., & Reips, U. (2012) · KOPS (University of Konstanz) · Cited by 349 · see citing works
NONGEOSPATIAL METADATA FOR THE ECOLOGICAL SCIENCES
Michener, W. K., Brunt, J. W., Helly, J. J., Kirchner, T. B., & Stafford, S. G. (1997) · Ecological Applications · doi:10.1890/1051-0761(1997)007[0330:nmftes]2.0.co;2 · Cited by 349 · see citing works
Consumer-Grade Global Positioning System (GPS) Accuracy and Reliability
Wing, M. G., Eklund, A., & Kellogg, L. D. (2005) · Journal of Forestry · doi:10.1093/jof/103.4.169 · Cited by 327 · see citing works
The iPlant Collaborative: Cyberinfrastructure for Enabling Data to Discovery for the Life Sciences
Merchant, N. C., Lyons, E. H., Goff, S. A., Vaughn, M. W., Ware, D., Micklos, D. A., & Antin, P. B. (2016) · PLoS Biology · doi:10.1371/journal.pbio.1002342 · Cited by 308 · see citing works
A flexible GPS tracking system for studying bird behaviour at multiple scales
Bouten, W., Baaij, E., Shamoun-Baranes, J. Z., & Camphuysen, C. J. (2012) · Journal für Ornithologie · doi:10.1007/s10336-012-0908-1 · Cited by 295 · see citing works
Xu, J. (2006) · Molecular Ecology · doi:10.1111/j.1365-294x.2006.02882.x · Cited by 293 · see citing works
The first 50 years of the North American Breeding Bird Survey
Sauer, J. R., Pardieck, K. L., Ziolkowski, D. J., Smith, A. C., Hudson, M.-A. R., Rodríguez, V. R., Berlanga, H. A., Niven, D. K., & Link, W. A. (2017) · Ornithological Applications · doi:10.1650/condor-17-83.1 · Cited by 288 · see citing works
Cloud computing and the DNA data race
Schatz, M. C., Langmead, B., & Salzberg, S. L. (2010) · Nature Biotechnology · doi:10.1038/nbt0710-691 · Cited by 284 · see citing works
Clark, J. S., Nemergut, D. R., Seyednasrollah, B., Turner, P. J., & Zhang, Y. S. (2016) · Ecological Monographs · doi:10.1002/ecm.1241 · Cited by 283 · see citing works
Our path to better science in less time using open data science tools
Lowndes, J. S., Best, B. D., Scarborough, C., Afflerbach, J. C., Frazier, M. R., O’Hara, C. C., Jiang, N., & Halpern, B. S. (2017) · Nature Ecology & Evolution · doi:10.1038/s41559-017-0160 · Cited by 283 · see citing works
Farina, A. (2013) · Springer eBooks · doi:10.1007/978-94-007-7374-5 · Cited by 282 · see citing works
Using phenocams to monitor our changing Earth: toward a global phenocam network
Brown, T. B., Hultine, K. R., Steltzer, H., Denny, E. G., Denslow, M., Granados, J. A., Henderson, S., MOORE, D. J. P., Nagai, S., SanClements, M. D., et al. (2016) · Frontiers in Ecology and the Environment · doi:10.1002/fee.1222 · Cited by 275 · see citing works
Wireless Sensor Networks for Ecology
Porter, J. H., ARZBERGER, P. W., Braun, H.-W., BRYANT, P., Gage, S. H., Hansen, T. C., Hanson, P. C., Lin, C.-C., Lin, F., Kratz, T. K., et al. (2005) · BioScience · doi:10.1641/0006-3568(2005)055[0561:wsnfe]2.0.co;2 · Cited by 241 · see citing works
The New Bioinformatics: Integrating Ecological Data from the Gene to the Biosphere
Jones, M. B., Schildhauer, M. P., Reichman, O. J., & Bowers, S. (2006) · Annual Review of Ecology Evolution and Systematics · doi:10.1146/annurev.ecolsys.37.091305.110031 · Cited by 229 · see citing works
Advancing ecological research with ontologies
Madin, J. S., Bowers, S., Schildhauer, M. P., & Jones, M. B. (2008) · Trends in Ecology & Evolution · doi:10.1016/j.tree.2007.11.007 · Cited by 205 · see citing works
Geo-spatial Event Detection in the Twitter Stream
Walther, M., & Kaißer, M. (2013) · Lecture notes in computer science · doi:10.1007/978-3-642-36973-5_30 · Cited by 186 · see citing works
Making Research Data Repositories Visible: The re3data.org Registry
Pampel, H., Vierkant, P., Scholze, F., Bertelmann, R., Kindling, M., Klump, J., Goebelbecker, H.-J., Gundlach, J., Schirmbacher, P., & Dierolf, U. (2013) · PLoS ONE · doi:10.1371/journal.pone.0078080 · Cited by 185 · see citing works
Collaboration and Productivity in Scientific Synthesis
Hampton, S. E., & Parker, J. N. (2011) · BioScience · doi:10.1525/bio.2011.61.11.9 · Cited by 176 · see citing works
Software Carpentry: lessons learned
Wilson, G. (2016) · F1000Research · doi:10.12688/f1000research.3-62.v2 · Cited by 174 · see citing works
Blei, D. M., & Smyth, P. (2017) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1702076114 · Cited by 171 · see citing works
Towards a collaborative, global infrastructure for biodiversity assessment
Guralnick, R., Hill, A. W., & Lane, M. A. (2007) · Ecology Letters · doi:10.1111/j.1461-0248.2007.01063.x · Cited by 163 · see citing works
Peters, D. P. C., Havstad, K. M., Cushing, J., Tweedie, C. E., Fuentes, O., & Villanueva‐Rosales, N. (2014) · Ecosphere · doi:10.1890/es13-00359.1 · Cited by 162 · see citing works
Oberbauer, S. F., Elmendorf, S. C., Troxler, T. G., Hollister, R. D., Rocha, A. V., Bret-Harte, M. S., Dawes, M. A., Fosaa, A. M., Henry, G. H. R., Høye, T. T., et al. (2013) · Philosophical Transactions of the Royal Society B Biological Sciences · doi:10.1098/rstb.2012.0481 · Cited by 157 · see citing works
GPS for real-time earthquake source determination and tsunami warning systems
Blewitt, G., Hammond, W. C., Kreemer, C., Plag, H., Stein, S. A., & Okal, E. A. (2009) · Journal of Geodesy · doi:10.1007/s00190-008-0262-5 · Cited by 153 · see citing works
Unmet needs for analyzing biological big data: A survey of 704 NSF principal investigators
Barone, L., Williams, J., & Micklos, D. A. (2017) · PLoS Computational Biology · doi:10.1371/journal.pcbi.1005755 · Cited by 153 · see citing works
Self-citationDietze, M. C. (2017) · Princeton University Press eBooks · doi:10.1515/9781400885459 · Cited by 145 · see citing works
Hamel, S., Killengreen, S. T., Henden, J., Eide, N. E., Rød‐Eriksen, L., Ims, R. A., & Yoccoz, N. G. (2012) · Methods in Ecology and Evolution · doi:10.1111/j.2041-210x.2012.00262.x · Cited by 142 · see citing works
Peters, D. P. C., Loescher, H. W., SanClements, M. D., & Havstad, K. M. (2014) · Ecosphere · doi:10.1890/es13-00295.1 · Cited by 142 · see citing works
New Eyes on the World: Advanced Sensors for Ecology
Porter, J. H., Nagy, E. S., Kratz, T. K., Hanson, P. C., Collins, S. L., & ARZBERGER, P. W. (2009) · BioScience · doi:10.1525/bio.2009.59.5.6 · Cited by 139 · see citing works
R Markdown: Integrating A Reproducible Analysis Tool into Introductory Statistics
Baumer, B. S., Çetinkaya-Rundel, M., Bray, A. P., Loi, L., & Horton, N. J. (2014) · Technology Innovations in Statistics Education · doi:10.5070/t581020118 · Cited by 136 · see citing works
Large-scale climatic and geophysical controls on the leaf economics spectrum
Asner, G. P., Knapp, D., Anderson, C. B., Martin, R. E., & Vaughn, N. R. (2016) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1604863113 · Cited by 132 · see citing works
Institute of Electrical and Electronics Engineers (IEEE)
(2021) · doi:10.5040/9781350928060.35 · Cited by 126 · see citing works
Nasahara, K. N., & Nagai, S. (2015) · Ecological Research · doi:10.1007/s11284-014-1239-x · Cited by 125 · see citing works
Forest Inventory and Analysis Database of the United States of America (FIA)
Gray, A., Brandeis, T. J., Shaw, J. D., McWilliams, W. H., & Miles, P. D. (2012) · Biodiversity & Ecology · doi:10.7809/b-e.00079 · Cited by 124 · see citing works
Observing changing ecological diversity in the Anthropocene
SCHIMEL, D. S., Asner, G. P., & Moorcroft, P. R. (2013) · Frontiers in Ecology and the Environment · doi:10.1890/120111 · Cited by 120 · see citing works
SAR image analysis techniques for flood area mapping - literature survey
Manavalan, R. (2016) · Earth Science Informatics · doi:10.1007/s12145-016-0274-2 · Cited by 120 · see citing works
Schnase, J. L., Duffy, D. Q., Tamkin, G. S., Nadeau, D., Thompson, J. H., Grieg, C. M., McInerney, M. A., & Webster, W. P. (2014) · Computers Environment and Urban Systems · doi:10.1016/j.compenvurbsys.2013.12.003 · Cited by 115 · see citing works
Using citizen science butterfly counts to predict species population trends
Dennis, E. B., Morgan, B. J. T., BRERETON, T. M., Roy, D. B., & Fox, R. (2017) · Conservation Biology · doi:10.1111/cobi.12956 · Cited by 108 · see citing works
Paleoecoinformatics: applying geohistorical data to ecological questions
Brewer, S., Jackson, S. T., & Williams, J. W. (2011) · Trends in Ecology & Evolution · doi:10.1016/j.tree.2011.09.009 · Cited by 107 · see citing works
Self-citationData Carpentry: Workshops to Increase Data Literacy for Researchers
Teal, T. K., Cranston, K. A., Lapp, H., White, E., Wilson, G., Ram, K., & Pawlik, A. (2015) · International Journal of Digital Curation · doi:10.2218/ijdc.v10i1.351 · Cited by 106 · see citing works
Data quality, performance, and uncertainty in taxonomic identification for biological assessments
Stribling, J. B., Pavlik, K. L., Holdsworth, S. M., & Leppo, E. W. (2008) · Journal of the North American Benthological Society · doi:10.1899/07-175.1 · Cited by 95 · see citing works
The Next Decade of Big Data in Ecosystem Science
LaDeau, S. L., Han, B. A., Rosi, E. J., & Weathers, K. C. (2016) · Ecosystems · doi:10.1007/s10021-016-0075-y · Cited by 93 · see citing works
neotoma: A Programmatic Interface to the Neotoma Paleoecological Database
Goring, S. J., Dawson, A., Simpson, G. L., Ram, K., Graham, R., Grimm, E. C., & Williams, J. W. (2015) · Open Quaternary · doi:10.5334/oq.ab · Cited by 86 · see citing works
Self-citationElevating The Status of Code in Ecology
Mislan, K. A. S., Heer, J., & White, E. P. (2015) · Trends in Ecology & Evolution · doi:10.1016/j.tree.2015.11.006 · Cited by 83 · see citing works
It's Good to Share: Why Environmental Scientists’ Ethics Are Out of Date
Soranno, P. A., Cheruvelil, K. S., Elliott, K. C., & Montgomery, G. M. (2014) · BioScience · doi:10.1093/biosci/biu169 · Cited by 79 · see citing works
A Case for Data Commons: Toward Data Science as a Service
Grossman, R. L., Heath, A., Murphy, M., Patterson, M., & Wells, W. (2016) · Computing in Science & Engineering · doi:10.1109/mcse.2016.92 · Cited by 78 · see citing works
Combining statistical inference and decisions in ecology
Williams, P. J., & Hooten, M. B. (2016) · Ecological Applications · doi:10.1890/15-1593.1 · Cited by 76 · see citing works
Building Software, Building Community: Lessons from the rOpenSci Project
Boettiger, C., Chamberlain, S., Hart, E., & Ram, K. (2015) · Journal of Open Research Software · doi:10.5334/jors.bu · Cited by 74 · see citing works
Whither Turbulence and Big Data in the 21st Century?
Pollard, A., Castillo, L., Danaila, L., & Glauser, M. (2016) · Springer eBooks · doi:10.1007/978-3-319-41217-7 · Cited by 72 · see citing works
Guide to Big Data Applications
(2017) · Studies in big data · doi:10.1007/978-3-319-53817-4 · Cited by 72 · see citing works
Using citizen science to monitor pollination services
Birkin, L., & Goulson, D. (2015) · Ecological Entomology · doi:10.1111/een.12227 · Cited by 70 · see citing works
Synthesis Centers as Critical Research Infrastructure
Baron, J. S., Specht, A., Garnier, É., Bishop, P., Campbell, C., Davis, F. W., Fady, B., Field, D., Gross, L. J., Guru, S. M., et al. (2017) · BioScience · doi:10.1093/biosci/bix053 · Cited by 69 · see citing works
Engemann, K., Sandel, B., Enquist, B. J., Jørgensen, P. M., Kraft, N. J. B., Marcuse-Kubitza, A., McGill, B. J., Morueta‐Holme, N., Peet, R. K., Violle, C., et al. (2015) · Botanical Journal of the Linnean Society · doi:10.1111/boj.12362 · Cited by 67 · see citing works
From radio telemetry to ultra-low-power sensor networks: tracking bats in the wild
Dressler, F., Ripperger, S. P., Hierold, M., Nowak, T., Eibel, C., Cassens, B., Mayer, F., Meyer-Wegener, K., & Koelpin, A. (2016) · IEEE Communications Magazine · doi:10.1109/mcom.2016.7378438 · Cited by 65 · see citing works
NIST Big Data Interoperability Framework: Volume 1, Definitions
NIST Big Data Public Working Group Definitions and Taxonomies Subgroup (2015) · doi:10.6028/nist.sp.1500-1 · Cited by 64 · see citing works
Joppa (2017) · doi:10.1038/d41586-017-08675-7 · Cited by 60 · see citing works
Involving Citizen Scientists in Biodiversity Observation
Chandler, M., See, L., Buesching, C. D., Cousins, J. A., Gillies, C. L., Kays, R., Newman, C., Pereira, H. M., & Tiago, P. (2016) · Springer eBooks · doi:10.1007/978-3-319-27288-7_9 · Cited by 57 · see citing works
LeBauer, D. S., Rob Kooper, A., Mulrooney, P., Rohde, S., Wang, D., Long, S. P., & Dietze, M. C. (2017) · GCB Bioenergy · doi:10.1111/gcbb.12420 · Cited by 51 · see citing works
Towards a more reproducible ecology
Borregaard, M. K., & Hart, E. (2016) · Ecography · doi:10.1111/ecog.02493 · Cited by 49 · see citing works
Spatial Cloud Computing: A Practical Approach
Yang, C. P., & Huang, Q. (2013) · Cited by 45 · see citing works
Ripperger, S. P., Josić, D., Hierold, M., Koelpin, A., Weigel, R., Hartmann, M., Page, R. A., & Mayer, F. (2016) · Ecology and Evolution · doi:10.1002/ece3.2040 · Cited by 44 · see citing works
Yang, C. P., & Huang, Q. (2013) · CRC Press eBooks · doi:10.1201/b16106 · Cited by 41 · see citing works
Random walk simulations of fossil proxy data
Blaauw, M., Bennett, K. D., & Christen, J. A. (2010) · The Holocene · doi:10.1177/0959683609355180 · Cited by 40 · see citing works
Species distribution modeling in the cloud
Candela, L., Castelli, D., Coro, G., Pagano, P., & Sinibaldi, F. (2013) · Concurrency and Computation Practice and Experience · doi:10.1002/cpe.3030 · Cited by 39 · see citing works
Bringing your tools to CyVerse Discovery Environment using Docker
Devisetty, U. K., Kennedy, K., Sarando, P., Merchant, N. C., & Lyons, E. H. (2016) · F1000Research · doi:10.12688/f1000research.8935.1 · Cited by 35 · see citing works
Five ways consortia can catalyse open science
Cutcher‐Gershenfeld, J., Baker, K. S., Berente, N., Flint, C. C., Gershenfeld, G., Grant, B. C., Haberman, M., King, J. L., Kirkpatrick, C. R., Lawrence, B. S., et al. (2017) · Nature · doi:10.1038/543615a · Cited by 34 · see citing works
Cost-Effective Mapping Using Unmanned Aerial Vehicles in Ecology Monitoring Applications
Bryson, M., Reid, A., Hung, C., Ramos, F. T., & Sukkarieh, S. (2013) · Springer tracts in advanced robotics · doi:10.1007/978-3-642-28572-1_35 · Cited by 31 · see citing works
Ma, X. (2017) · Earth Science Informatics · doi:10.1007/s12145-017-0304-8 · Cited by 31 · see citing works
The role of citizen science in monitoring small-scale pollution events
Hyder, K., Wright, S. R., Kirby, M. F., & Brant, J. L. (2017) · Marine Pollution Bulletin · doi:10.1016/j.marpolbul.2017.04.038 · Cited by 29 · see citing works
The information science of microbial ecology
Hahn, A. S., Konwar, K. M., Louca, S., Hanson, N. W., & Hallam, S. (2016) · Current Opinion in Microbiology · doi:10.1016/j.mib.2016.04.014 · Cited by 25 · see citing works
Programming with BIG Data in R: Scaling Analytics from One to Thousands of Nodes
Schmidt, D., Chen, W.-C., Matheson, M. A., & George Ostrouchov, A. (2016) · Big Data Research · doi:10.1016/j.bdr.2016.10.002 · Cited by 25 · see citing works
Reflections on the Relevance of History in a Nonstationary World
Betancourt, J. L. (2012) · Wiley eBooks · doi:10.1002/9781118329726.ch23 · Cited by 17 · see citing works
Fischer, J., Tuecke, S. J., Foster, I. T., & Stewart, C. A. (2015) · doi:10.1145/2753524.2753530 · Cited by 14 · see citing works
Optimal spatio-temporal monitoring designs for characterizing population trends
Hooten, M. B., Ross, B. E., & Wikle, C. K. (2012) · Cambridge University Press eBooks · doi:10.1017/cbo9781139022422.026 · Cited by 14 · see citing works
Firbank, L. G., Bertora, C., Blankman, D., Vedove, G. D., Frenzel, M., Grignani, C., Groner, E., Kertész, M., Krab, E. J., Matteucci, G., et al. (2017) · Ecology and Evolution · doi:10.1002/ece3.2997 · Cited by 14 · see citing works
How to deal with petabytes of data: the LHC Grid project
Britton, D., & Lloyd, S. L. (2014) · Reports on Progress in Physics · doi:10.1088/0034-4885/77/6/065902 · Cited by 13 · see citing works
Servilla, M., Brunt, J. W., Costa, D., McGann, J., & Waide, R. B. (2016) · Ecological Informatics · doi:10.1016/j.ecoinf.2016.07.003 · Cited by 13 · see citing works
Concept for an Adaptive Low Power Wide Area (LPWA) Bat Communication Network
Schadhauser, M., Robert, J., & Heuberger, A. (2016) · Cited by 9 · see citing works
The Discovery Cloud: Accelerating and Democratizing Research on a Global Scale
Foster, I. T., Chard, K., & Tuecke, S. J. (2016) · IEEE International Conference on Cloud Engineering · doi:10.1109/ic2e.2016.46 · Cited by 7 · see citing works
BRIDGING THE GAP BETWEEN TECHNOLOGY AND SCIENCE WITH EXAMPLES FROM ECOLOGY AND BIODIVERSITY
Downey, L. L., & Pennington, D. D. (2009) · Biodiversity Informatics · doi:10.17161/bi.v6i1.1574 · Cited by 6 · see citing works
Harnessing the power of omics in microbiology
Teitzel, G. M. (2014) · Trends in Microbiology · doi:10.1016/j.tim.2014.03.006 · Cited by 4 · see citing works
Cross-institutional research cyberinfrastructure for data intensive science
Lenhardt, W. C., Conway, M., Scott, E., Blanton, B., Krishnamurthy, A. K., Hadžikadić, M., Vouk, M. A., & Wilson, A. G. (2016) · IEEE High Performance Extreme Computing Conference · doi:10.1109/hpec.2016.7761597 · Cited by 4 · see citing works
Big Data Solutions to Interpreting Complex Systems in the Environment
Chi, H., Pitter, S., Li, N., & Tian, H. (2017) · Studies in big data · doi:10.1007/978-3-319-53817-4_5 · Cited by 4 · see citing works
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Perspectives in machine learning for wildlife conservation
Tuia, D., Kellenberger, B., Beery, S., Costelloe, B. R., Zuffi, S., Risse, B., Mathis, A., Mathis, M. W., van Langevelde, F., Burghardt, T., et al. (2022) · Nature Communications · doi:10.1038/s41467-022-27980-y · Cited by 740 · see citing works
Towards the fully automated monitoring of ecological communities
Besson, M., Alison, J., Bjerge, K., Gorochowski, T. E., Høye, T. T., Jucker, T., Mann, H. M. R., & Clements, C. F. (2022) · Ecology Letters · doi:10.1111/ele.14123 · Cited by 279 · see citing works
The Movebank system for studying global animal movement and demography
Kays, R., Davidson, S. C., Berger, M., Bohrer, G., Fiedler, W., Flack, A., Hirt, J., Hahn, C., Gauggel, D., Russell, B., et al. (2021) · Methods in Ecology and Evolution · doi:10.1111/2041-210x.13767 · Cited by 233 · see citing works
Open Science principles for accelerating trait-based science across the Tree of Life
Gallagher, R. V., Falster, D. S., Maitner, B., Salguero‐Gómez, R., Vandvik, V., Pearse, W. D., Schneider, F. D., Kattge, J., Poelen, J. H., Madin, J. S., et al. (2020) · Nature Ecology & Evolution · doi:10.1038/s41559-020-1109-6 · Cited by 218 · see citing works
Ahumada, J., Fegraus, E., Birch, T., Flores, N., Kays, R., O’Brien, T. G., Palmer, J., Schuttler, S., Zhao, J. Y., Jetz, W., et al. (2019) · Environmental Conservation · doi:10.1017/s0376892919000298 · Cited by 215 · see citing works
Inferring microbiota functions from taxonomic genes: a review
Djemiel, C., Maron, P., Terrat, S., Dequiedt, S. S., Cottin, A., & Ranjard, L. (2022) · GigaScience · doi:10.1093/gigascience/giab090 · Cited by 160 · see citing works
Why don't we share data and code? Perceived barriers and benefits to public archiving practices
Gomes, D. G. E., Pottier, P., Crystal‐Ornelas, R., Hudgins, E. J., Foroughirad, V., Sánchez‐Reyes, L. L., Turba, R., Martinez, P. A., Moreau, D., Bertram, M. G., et al. (2022) · Proceedings of the Royal Society B Biological Sciences · doi:10.1098/rspb.2022.1113 · Cited by 174 · see citing works
Harnessing Big Data to Support the Conservation and Rehabilitation of Mangrove Forests Globally
Worthington, T. A., Andradi‐Brown, D. A., Bhargava, R., Buelow, C. A., Bunting, P., Duncan, C., Fatoyinbo, T., Friess, D. A., Goldberg, L., Hilarides, L., et al. (2020) · One Earth · doi:10.1016/j.oneear.2020.04.018 · Cited by 148 · see citing works
Three Frontiers for the Future of Biodiversity Research Using Citizen Science Data
Callaghan, C. T., Poore, A. G. B., Mesaglio, T., Moles, A. T., Nakagawa, S., Roberts, C. J., Rowley, J. J. L., Vergés, A., Wilshire, J. H., & Cornwell, W. K. (2020) · BioScience · doi:10.1093/biosci/biaa131 · Cited by 142 · see citing works
Temporal β diversity—A macroecological perspective
Magurran, A. E., Dornelas, M., Moyes, F., & Henderson, P. A. (2019) · Global Ecology and Biogeography · doi:10.1111/geb.13026 · Cited by 139 · see citing works
A unifying framework for studying and managing climate-driven rates of ecological change
Williams, J. W., Ordonez, A., & Svenning, J.-C. (2020) · Nature Ecology & Evolution · doi:10.1038/s41559-020-01344-5 · Cited by 135 · see citing works
Self-citationHarmonizing taxon names in biodiversity data: A review of tools, databases and best practices
Grenié, M., Berti, E., Carvajal‐Quintero, J. D., Dädlow, G. M. L., Sagouis, A., & Winter, M. (2022) · Methods in Ecology and Evolution · doi:10.1111/2041-210x.13802 · Cited by 130 · see citing works
Caetano, G. H. D. O., Chapple, D. G., Grenyer, R., Raz, T., Rosenblatt, J., Tingley, R., Böhm, M., Meiri, S., & Roll, U. (2022) · PLoS Biology · doi:10.1371/journal.pbio.3001544 · Cited by 123 · see citing works
Circuitscape in Julia: Empowering Dynamic Approaches to Connectivity Assessment
Hall, K. R., Anantharaman, R., Landau, V. A., Clark, M. M., Dickson, B. G., Jones, A., Platt, J., Edelman, A. S., & Shah, V. B. (2021) · Land · doi:10.3390/land10030301 · Cited by 119 · see citing works
Machine learning in landscape ecological analysis: a review of recent approaches
Stupariu, M., Cushman, S. A., Pleșoianu, A., Pătru-Stupariu, I., & Fürst, C. (2021) · Landscape Ecology · doi:10.1007/s10980-021-01366-9 · Cited by 115 · see citing works
Born‐digital biodiversity data: Millions and billions
Kays, R., McShea, W. J., & Wikelski, M. C. (2020) · Diversity and Distributions · doi:10.1111/ddi.12993 · Cited by 110 · see citing works
To harness traits for ecology, let’s abandon ‘functionality’
Streit, R. P., & Bellwood, D. R. (2022) · Trends in Ecology & Evolution · doi:10.1016/j.tree.2022.11.009 · Cited by 110 · see citing works
A survey of mobility-aware Multi-access Edge Computing: Challenges, use cases and future directions
Singh, R., Sukapuram, R., & Chakraborty, S. (2022) · Ad Hoc Networks · doi:10.1016/j.adhoc.2022.103044 · Cited by 107 · see citing works
Digital twins: dynamic model-data fusion for ecology
de Koning, K., Broekhuijsen, J., Kühn, I., Ovaskainen, O., Taubert, F., Endresen, D., Schigel, D., & Grimm, V. (2023) · Trends in Ecology & Evolution · doi:10.1016/j.tree.2023.04.010 · Cited by 106 · see citing works
A review of machine learning and big data applications in addressing ecosystem service research gaps
Manley, K., Nyelele, C., & Egoh, B. N. (2022) · Ecosystem Services · doi:10.1016/j.ecoser.2022.101478 · Cited by 108 · see citing works
Bioacoustic time capsules: Using acoustic monitoring to document biodiversity
Sugai, L. S. M., & Llusia, D. (2018) · Ecological Indicators · doi:10.1016/j.ecolind.2018.12.021 · Cited by 93 · see citing works
Robust ecological analysis of camera trap data labelled by a machine learning model
Whytock, R. C., Świeżewski, J., Zwerts, J. A., Bara‐Słupski, T., Pambo, A. F. K., Rogala, M., Bahaa‐el‐din, L., Boekee, K., Brittain, S., Cardoso, A. W., et al. (2021) · Methods in Ecology and Evolution · doi:10.1111/2041-210x.13576 · Cited by 92 · see citing works
Fer, I., Gardella, A. K., Shiklomanov, A., Campbell, E. E., Cowdery, E. M., Kauwe, M. G. D., Desai, A. R., Duveneck, M. J., Fisher, J. B., Haynes, K., et al. (2020) · Global Change Biology · doi:10.1111/gcb.15409 · Cited by 90 · see citing works
Big data applications: overview, challenges and future
Badshah, A., Daud, A. Y., Alharbey, R., Banjar, A., Bukhari, A. A., & Alshemaimri, B. K. (2024) · Artificial Intelligence Review · doi:10.1007/s10462-024-10938-5 · Cited by 108 · see citing works
Therrien, J.-D., Nicolaï, N., & Vanrolleghem, P. A. (2020) · Water Science & Technology · doi:10.2166/wst.2020.393 · Cited by 87 · see citing works
Remote sensing and modeling fusion for investigating the ecosystem water-carbon coupling processes
Sun, P., Wu, Y., Xiao, J., Hui, J., Hu, J., Zhao, F., Qiu, L., & Liu, S. (2019) · The Science of The Total Environment · doi:10.1016/j.scitotenv.2019.134064 · Cited by 86 · see citing works
Oliver, R. Y., Meyer, C., Ranipeta, A., Winner, K., & Jetz, W. (2021) · PLoS Biology · doi:10.1371/journal.pbio.3001336 · Cited by 83 · see citing works
Gamliel, I., Buba, Y., Guy‐Haim, T., Garval, T., Willette, D. A., Rilov, G., & Belmaker, J. (2020) · Ecography · doi:10.1111/ecog.04423 · Cited by 78 · see citing works
The power of forecasts to advance ecological theory
Lewis, A. S. L., Rollinson, C. R., Allyn, A., Ashander, J., Brodie, S. J., Brookson, C. B., Collins, E. L., Dietze, M. C., Gallinat, A. S., Juvigny‐Khenafou, N. P. D., et al. (2022) · Methods in Ecology and Evolution · doi:10.1111/2041-210x.13955 · Cited by 78 · see citing works
fundiversity: a modular R package to compute functional diversity indices
Grenié, M., & Gruson, H. (2023) · Ecography · doi:10.1111/ecog.06585 · Cited by 76 · see citing works
Stressing over the Complexities of Multiple Stressors in Marine and Estuarine Systems
Glibert, P. M., Cai, W., Hall, E. R., Li, M., Main, K. L., Rose, K. A., Testa, J. M., & Vidyarathna, N. K. (2022) · Ocean-Land-Atmosphere Research · doi:10.34133/2022/9787258 · Cited by 73 · see citing works
Human vs. machine: Detecting wildlife in camera trap images
Leorna, S., & Brinkman, T. J. (2022) · Ecological Informatics · doi:10.1016/j.ecoinf.2022.101876 · Cited by 68 · see citing works
Data-Intensive Ecological Research Is Catalyzed by Open Science and Team Science
Cheruvelil, K. S., & Soranno, P. A. (2018) · BioScience · doi:10.1093/biosci/biy097 · Cited by 66 · see citing works
An Outlook for Deep Learning in Ecosystem Science
Perry, G. L. W., Seidl, R., Bellvé, A. M., & Rammer, W. (2022) · Ecosystems · doi:10.1007/s10021-022-00789-y · Cited by 69 · see citing works
Petsch, D. K., Bertoncin, A. P. D. S., Ortega, J. C. G., & Thomaz, S. M. (2022) · Oikos · doi:10.1111/oik.08768 · Cited by 69 · see citing works
Guillarme, N. L., & Thuiller, W. (2021) · Methods in Ecology and Evolution · doi:10.1111/2041-210x.13778 · Cited by 57 · see citing works
Advances in image acquisition and processing technologies transforming animal ecological studies
Nazir, S., & Kaleem, M. (2021) · Ecological Informatics · doi:10.1016/j.ecoinf.2021.101212 · Cited by 58 · see citing works
Satellite Remote Sensing of Savannas: Current Status and Emerging Opportunities
Abdi, A. M., Brandt, M., Abel, C., & Fensholt, R. (2022) · Journal of Remote Sensing · doi:10.34133/2022/9835284 · Cited by 57 · see citing works
The Internet of Animals: what it is, what it could be
Kays, R., & Wikelski, M. C. (2023) · Trends in Ecology & Evolution · doi:10.1016/j.tree.2023.04.007 · Cited by 58 · see citing works
‘Small Data’ for big insights in ecology
Todman, L., Bush, A., & Hood, A. S. C. (2023) · Trends in Ecology & Evolution · doi:10.1016/j.tree.2023.01.015 · Cited by 51 · see citing works
A framework to integrate innovations in invasion science for proactive management
van Rees, C. B., Hand, B. K., Carter, S. C., Bargeron, C. T., Cline, T. J., Daniel, W. M., Ferrante, J. A., Gaddis, K. D., Hunter, M. E., Jarnevich, C. S., et al. (2022) · Biological reviews/Biological reviews of the Cambridge Philosophical Society · doi:10.1111/brv.12859 · Cited by 47 · see citing works
Kyathanahally, S. P., Hardeman, T., Reyes, M., Merz, E., Bulas, T., Brun, P., Pomati, F., & Baity‐Jesi, M. (2022) · Scientific Reports · doi:10.1038/s41598-022-21910-0 · Cited by 46 · see citing works
Moving toward a new era of ecosystem science
Yu, G., Piao, S. L., Zhang, Y., Liu, L., Peng, J., & Niu, S. (2021) · Geography and sustainability · doi:10.1016/j.geosus.2021.06.004 · Cited by 43 · see citing works
Towards a standardized framework for AI-assisted, image-based monitoring of nocturnal insects
Roy, D. B., Alison, J., August, T., Bélisle, M., Bjerge, K., Bowden, J. J., Bunsen, M. J., Cunha, F., Geissmann, Q., Goldmann, K., et al. (2024) · Philosophical Transactions of the Royal Society B Biological Sciences · doi:10.1098/rstb.2023.0108 · Cited by 42 · see citing works
Animal-borne technologies in wildlife research and conservation
Rafiq, K., Pitcher, B. J., Cornelsen, K. A., Hansen, K. W., King, A. J., Appleby, R. G., Abrahms, B. L., & Jordan, N. R. (2021) · doi:10.1093/oso/9780198850243.003.0006 · Cited by 40 · see citing works
Soubeyrand, S., Estoup, A., Cruaud, A., Malembic-Maher, S., Meynard, C. N., Ravigné, V., Barbier, M., Barrès, B., Berthier, K., Boitard, S., et al. (2024) · CABI Agriculture and Bioscience · doi:10.1186/s43170-024-00273-8 · Cited by 44 · see citing works
Elephants and algorithms: a review of the current and future role of AI in elephant monitoring
Brickson, L. L., Zhang, L., Vollrath, F. W., Douglas‐Hamilton, I., & Titus, A. (2023) · Journal of The Royal Society Interface · doi:10.1098/rsif.2023.0367 · Cited by 44 · see citing works
Cooke, S. J., Fulton, E. A., Sauer, W., Lynch, A. J., Link, J. S., Koning, A. A., Jena, J., Silva, L. G. M., King, A. J., Kelly, R., et al. (2023) · Reviews in Fish Biology and Fisheries · doi:10.1007/s11160-023-09765-8 · Cited by 37 · see citing works
Big data approaches to the spatial ecology and conservation of marine megafauna
Grémillet, D., Chevallier, D., & Guinet, C. (2022) · ICES Journal of Marine Science · doi:10.1093/icesjms/fsac059 · Cited by 36 · see citing works
Grade, A. M., Chan, N. W., Gajbhiye, P., Perkins, D. J., & Warren, P. S. (2022) · PLoS ONE · doi:10.1371/journal.pone.0277223 · Cited by 35 · see citing works
Camtrap DP: an open standard for the FAIR exchange and archiving of camera trap data
Bubnicki, J. W., Norton, B., Baskauf, S., Bruce, T., Cagnacci, F., Casaer, J., Churski, M., Cromsigt, J. P. G. M., Farra, S. D., Fiderer, C., et al. (2023) · Remote Sensing in Ecology and Conservation · doi:10.1002/rse2.374 · Cited by 39 · see citing works
Drones and AI-Driven Solutions for Wildlife Monitoring
Aliane, N. (2025) · Drones · doi:10.3390/drones9070455 · Cited by 39 · see citing works
Provoking a Cultural Shift in Data Quality
McCord, S. E., Webb, N. P., Zee, J. W. V., Burnett, S. H., Christensen, E. M., Courtright, E. M., Laney, C., Lunch, C. K., Maxwell, C. M., Karl, J. W., et al. (2021) · BioScience · doi:10.1093/biosci/biab020 · Cited by 33 · see citing works
MoveApps: a serverless no-code analysis platform for animal tracking data
Kölzsch, A., Davidson, S. C., Gauggel, D., Hahn, C., Hirt, J., Kays, R., Lang, I., Lohr, A., Russell, B., Scharf, A. K., et al. (2022) · Movement Ecology · doi:10.1186/s40462-022-00327-4 · Cited by 32 · see citing works
Truong, M.-X., & van der Wal, R. (2024) · BioScience · doi:10.1093/biosci/biae077 · Cited by 31 · see citing works
Four key challenges in the open‐data revolution
Salguero‐Gómez, R., Jackson, J., & Gascoigne, S. J. L. (2021) · Journal of Animal Ecology · doi:10.1111/1365-2656.13567 · Cited by 31 · see citing works
Yang, J., Li, C., Lo, L. S. H., Zhang, X., Chen, Z., Gao, J., Clara, U., Dai, Z., Nakaoka, M., Yang, H., et al. (2024) · Journal of Marine Science and Engineering · doi:10.3390/jmse12101729 · Cited by 30 · see citing works
Advancing causal inference in ecology: Pathways for biodiversity change detection and attribution
Schrodt, F., Beck, M., Estopinan, J., Bowler, D. E., Fontaine, C., Gaüzère, P., Goury, R., Grenié, M., Martins, I. S., Morueta‐Holme, N., et al. (2025) · Methods in Ecology and Evolution · doi:10.1111/2041-210x.70131 · Cited by 37 · see citing works
Changing the Nature of Quantitative Biology Education: Data Science as a Driver
Robeva, R., Jungck, J. R., & Gross, L. J. (2020) · Bulletin of Mathematical Biology · doi:10.1007/s11538-020-00785-0 · Cited by 29 · see citing works
Accelerating advances in landscape connectivity modelling with the ConScape library
Moorter, B. F. A. V., Kivimäki, I., Noack, A., Devooght, R., Panzacchi, M., Hall, K. R., Leleux, P., & Saerens, M. (2022) · Methods in Ecology and Evolution · doi:10.1111/2041-210x.13850 · Cited by 28 · see citing works
Why don’t we share data and code? Perceived barriers and benefits to public archiving practicesPreprint
Gomes, D. G. E., Pottier, P., Crystal‐Ornelas, R., Hudgins, E. J., Foroughirad, V., Sánchez‐Reyes, L. L., Turba, R., Martinez, P. A., Moreau, D., Bertram, M. G., et al. (2022) · doi:10.31222/osf.io/gaj43 · Cited by 29 · see citing works
Kelleher, C., & Braswell, A. (2021) · Environmental Modelling & Software · doi:10.1016/j.envsoft.2021.105113 · Cited by 12 · see citing works
Priorities for synthesis research in ecology and environmental science
Halpern, B. S., Boettiger, C., Dietze, M. C., Gephart, J. A., González, P., Grimm, N. B., Groffman, P. M., Gurevitch, J., Hobbie, S. E., Komatsu, K. J., et al. (2023) · Ecosphere · doi:10.1002/ecs2.4342 · Cited by 28 · see citing works
Effects of morphology and sediment permeability on coastal lagoons’ hydrological patterns
Meredith, W., Casamitjana, X., Quintana, X. D., & Menció, A. (2022) · Journal of Hydrology · doi:10.1016/j.jhydrol.2022.128259 · Cited by 27 · see citing works
Garcia, G. F., Corpetti, T., Nevoux, M., Beaulaton, L., & Martignac, F. (2023) · Aquatic Ecology · doi:10.1007/s10452-023-10004-2 · Cited by 31 · see citing works
Feng, M.-L. E., & Che‐Castaldo, J. P. (2021) · PLoS ONE · doi:10.1371/journal.pone.0257226 · Cited by 26 · see citing works
Cameron, D., Hartig, F., Minunno, F., Oberpriller, J., Reineking, B., Oijen, M. A. V., & Dietze, M. C. (2022) · Methods in Ecology and Evolution · doi:10.1111/2041-210x.14002 · Cited by 26 · see citing works
Uniting Experiments and Big Data to advance ecology and conservation
McCleery, R. A., Guralnick, R., Beatty, M. A., Belitz, M. W., Campbell, C. J., Idec, J. H., Jones, M. M., Kang, Y., Potash, A. D., & Fletcher, R. J. (2023) · Trends in Ecology & Evolution · doi:10.1016/j.tree.2023.05.010 · Cited by 26 · see citing works
Sandfort, R., Uhlhorn, B., Geißler, G., Lyhne, I., & Jiricka-Pürrer, A. (2024) · Impact Assessment and Project Appraisal · doi:10.1080/14615517.2024.2318684 · Cited by 24 · see citing works
Augustine, S. P., Bailey‐Marren, I., Charton, K. T., Kiel, N. G., & Peyton, M. (2024) · Global Change Biology · doi:10.1111/gcb.17116 · Cited by 25 · see citing works
Kattenborn, T., Richter, R., Guimarães‐Steinicke, C. R., Feilhauer, H., & Wirth, C. (2022) · Methods in Ecology and Evolution · doi:10.1111/2041-210x.13968 · Cited by 24 · see citing works
Ryo, M. (2023) · Ecological Research · doi:10.1111/1440-1703.12425 · Cited by 23 · see citing works
Recommendations for quantitative uncertainty consideration in ecology and evolution
Simmonds, E. G., Adjei, K. P., Cretois, B., Dickel, L., González‐Gil, R., Laverick, J. H., Mandeville, C. P., Mandeville, E. G., Ovaskainen, O., Sicacha-Parada, J., et al. (2023) · Trends in Ecology & Evolution · doi:10.1016/j.tree.2023.10.012 · Cited by 23 · see citing works
Davis, C. L., Bai, Y., Chen, D., Robinson, O. J., Ruiz‐Gutiérrez, V., Gomes, C. P., & Fink, D. (2023) · Ecology · doi:10.1002/ecy.4175 · Cited by 23 · see citing works
Connectivity and flow regime direct conservation priorities for pelagophil fishes
Mollenhauer, R., Brewer, S. K., Perkin, J. S., Swedberg, D. A., Wedgeworth, M., & Steffensmeier, Z. D. (2021) · Aquatic Conservation Marine and Freshwater Ecosystems · doi:10.1002/aqc.3631 · Cited by 23 · see citing works
Trait-Based Research on Rotifera: The Holy Grail or Just Messy?
Obertegger, U., & WALLACE, R. L. (2023) · Water · doi:10.3390/w15081459 · Cited by 22 · see citing works
Open Data Practices among Users of Primary Biodiversity Data
Mandeville, C. P., Koch, W., Nilsen, E. B., & Finstad, A. G. (2021) · BioScience · doi:10.1093/biosci/biab072 · Cited by 21 · see citing works
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Blair, J. D., Gaynor, K. M., Palmer, M. S., & Marshall, K. E. (2024) · Journal of Animal Ecology · doi:10.1111/1365-2656.14042 · Cited by 23 · see citing works
Delaney, J. T., & Larson, D. M. (2023) · Conservation Biology · doi:10.1111/cobi.14203 · Cited by 21 · see citing works
A semi-automatic workflow to process images from small mammal camera traps
Böhner, H., Kleiven, E. F., Ims, R. A., & Soininen, E. M. (2023) · Ecological Informatics · doi:10.1016/j.ecoinf.2023.102150 · Cited by 21 · see citing works
Opinions of citizen scientists on open access to UK butterfly and moth occurrence data
Fox, R., Bourn, N. A. D., Dennis, E. B., Heafield, R. T., Maclean, I. M. D., & Wilson, R. J. (2019) · Biodiversity and Conservation · doi:10.1007/s10531-019-01824-6 · Cited by 21 · see citing works
Kass, J. M., Smith, A. B., Warren, D. L., Vignali, S., Schmitt, S., Aiello‐Lammens, M. E., Arlé, E., Barbosa, A. M., Broennimann, O., Cobos, M. E., et al. (2024) · Ecography · doi:10.1111/ecog.07346 · Cited by 20 · see citing works
Rivera‐Monroy, V. H., Zhao, X., Wang, H., & Xue, Z. G. (2022) · Forests · doi:10.3390/f13101638 · Cited by 20 · see citing works
Realising the promise of large data and complex models
McCrea, R. S., King, R., Graham, L., & Börger, L. (2023) · Methods in Ecology and Evolution · doi:10.1111/2041-210x.14050 · Cited by 20 · see citing works
Soundscape Analytics: A New Frontier of Knowledge Discovery in Soundscape Data
Pijanowski, B. C., Rivas, F., Banerjee, S., Minghim, R., Lima, S. L., Bowers-Sword, R., Guzman, S. R., Revuelta-Acosta, J. D., Adeniji, A. E., Grimes, S. E., et al. (2024) · Current Landscape Ecology Reports · doi:10.1007/s40823-024-00101-9 · Cited by 20 · see citing works
Fulfilling the promise of digital tools to build rangeland resilience
Bestelmeyer, B. T., McCord, S. E., Browning, D. M., Burkett, L. M., Elias, E. H., Estell, R. E., Herrick, J. E., James, D. K., Spiegal, S. A., Utsumi, S. A., et al. (2024) · Frontiers in Ecology and the Environment · doi:10.1002/fee.2736 · Cited by 19 · see citing works
Artificial Intelligence for Climate Change Biology: From Data Collection to Predictions
Levy, O., & Shahar, S. (2024) · Integrative and Comparative Biology · doi:10.1093/icb/icae127 · Cited by 19 · see citing works
Modelling of ecological status of Polish lakes using deep learning techniques
Gebler, D., Kolada, A., Pasztaleniec, A., & Szoszkiewicz, K. (2020) · Environmental Science and Pollution Research · doi:10.1007/s11356-020-10731-1 · Cited by 19 · see citing works
Designing and implementing a data model for describing environmental monitoring and research sites
Wohner, C., Peterseil, J., & Klug, H. (2022) · Ecological Informatics · doi:10.1016/j.ecoinf.2022.101708 · Cited by 18 · see citing works
Standardized NEON organismal data for biodiversity research
Li, D., Record, S., Sokol, E. R., Bitters, M. E., Chen, M. Y., Chung, Y. A., Helmus, M. R., Jaimes, R., Jansen, L., Jarzyna, M. A., et al. (2022) · Ecosphere · doi:10.1002/ecs2.4141 · Cited by 18 · see citing works
Better incentives are needed to reward academic software development
Merow, C., Boyle, B. L., Enquist, B. J., Feng, X., Kass, J. M., Maitner, B., McGill, B. J., Owens, H. L., Park, D., Paz, A., et al. (2023) · Nature Ecology & Evolution · doi:10.1038/s41559-023-02008-w · Cited by 18 · see citing works
Seabird surveillance: combining CCTV and artificial intelligence for monitoring and research
Hentati‐Sundberg, J., Olin, A. B., Reddy, S., Berglund, P., SVENSSON, E. I., Reddy, M. J., Kasarareni, S., Carlsen, A. A., Hanes, M., Kad, S., et al. (2023) · Remote Sensing in Ecology and Conservation · doi:10.1002/rse2.329 · Cited by 18 · see citing works
Local human impacts disrupt depth-dependent zonation of tropical reef fish communities
Richardson, L. E., Heenan, A., Delargy, A. J., Neubauer, P., Lecky, J., Gove, J. M., Green, M., Kindinger, T. L., Ingeman, K. E., & Williams, G. J. (2023) · Nature Ecology & Evolution · doi:10.1038/s41559-023-02201-x · Cited by 18 · see citing works
Cyberinfrastructure and resources to enable an integrative approach to studying forest trees
Wegrzyn, J., Falk, T., Grau, E. S., Buehler, S. A., Ramnath, R., & Herndon, N. (2019) · Evolutionary Applications · doi:10.1111/eva.12860 · Cited by 17 · see citing works
Estimating the movements of terrestrial animal populations using broad-scale occurrence data
Supp, S. R., Bohrer, G., Fieberg, J., & Sorte, F. A. L. (2021) · Movement Ecology · doi:10.1186/s40462-021-00294-2 · Cited by 17 · see citing works
Poger, D., Yen, L., & Braet, F. (2023) · Histochemistry and Cell Biology · doi:10.1007/s00418-023-02191-8 · Cited by 17 · see citing works
Bimonte, S., Billaud, O., Fontaine, B., Martin, T., Flouvat, F., Hassan, A., Rouillier, N., & Sautot, L. (2021) · Ecological Informatics · doi:10.1016/j.ecoinf.2021.101231 · Cited by 17 · see citing works
Modeling Tick Populations: An Ecological Test Case for Gradient Boosted Trees
Manley, W., Tran, T., Prusinski, M. A., & Brisson, D. (2023) · Peer Community Journal · doi:10.24072/pcjournal.353 · Cited by 16 · see citing works
Carter, S., van Rees, C. B., Hand, B. K., Muhlfeld, C. C., Luikart, G., & Kimball, J. S. (2021) · Frontiers in Big Data · doi:10.3389/fdata.2021.734990 · Cited by 16 · see citing works
Aoki, L. R., Brisbin, M. M., Hounshell, A. G., Kincaid, D. W., Larson, E. I., Sansom, B. J., Shogren, A. J., Smith, R. S., & Sullivan‐Stack, J. (2022) · BioScience · doi:10.1093/biosci/biac020 · Cited by 15 · see citing works
- Authors
- Farley, S. S., Dawson, A., Goring, S. J., & Williams, J. W.
- Affiliations
- University of Wisconsin–Madison (US)
- Mount Royal University (CA)
- Venue
- BioScience
- Publisher
- Oxford University Press (OUP)
- Published
- 2018-07-18
- Volume
- 68
- Issue
- 8
- Pages
- 563-576
- ISSN
- 0006-3568 (ISSN-L)
- 1525-3244
- OpenAlex
- W2883471235
- Cited by
- 331
- References
- 143
- Citations by year
- 2026: 36 · 2025: 65 · 2024: 50 · 2023: 52 · 2022: 53 · 2021: 38 · 2020: 27 · 2019: 8 · 2018: 2
- FWCI
- 26.61
- Type
- journal article
- Language
- en
- Open access
- closed
- Locations
- BioScience (publishedVersion)
- Funders
- National Science Foundation
- Topics
- Social Sciences › Decision Sciences › Information Systems and Management › Big Data Technologies and Applications
- Physical Sciences › Computer Science › Information Systems › Research Data Management Practices
- Physical Sciences › Earth and Planetary Sciences › Geology › Environmental Monitoring and Data Management
- Keywords
- ecoinformatics, data scalability, remote sensing, citizen science, biodiversity databases, open data sharing, cloud computing, uncertainty quantification, ecological forecasting, data science education, interdisciplinary collaboration
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