Deletion of the KH1 Domain of Fmr1 Leads to Transcriptional Alterations and Attentional Deficits in Rats
Open accessPublished version of a preprint
Abstract
Abstract Fragile X Syndrome (FXS) is a neurodevelopmental disorder caused by mutations in the FMR1 gene. FXS is a leading monogenic cause of autism spectrum disorder (ASD) and inherited intellectual disability (ID). In most cases, the mutation is an expansion of a microsatellite (CGG triplet), which leads to suppressed expression of the fragile X mental retardation protein (FMRP), an RNA-binding protein involved in multiple aspects of mRNA metabolism. Interestingly, we found that the previously published Fmr1 knockout rat model of FXS expresses a transcript with an in-frame deletion of a K-homology (KH) domain, KH1. KH domains are RNA-binding domains of FMR1 and several of the few, known point mutations associated with FXS are found within them. We observed that this deletion leads to medial prefrontal cortex (mPFC)-dependent attention deficits, similar to those observed in FXS, and to alterations in transcriptional profiles within the mPFC, which mapped to two weighted gene coexpression network analysis modules. We demonstrated that these modules are conserved in human frontal cortex, are enriched for known FMRP targets and for genes involved in neuronal and synaptic processes, and that one is enriched for genes that are implicated in ASD, ID, and schizophrenia. Hub genes in these conserved modules represent potential targets for FXS. These findings provide support for a prefrontal deficit in FXS, indicate that attentional testing might be a reliable cross-species tool for investigating the pathophysiology of FXS and a potential readout for pharmacotherapy testing, and identify dysregulated gene expression modules in a relevant brain region. Significance Statement The significance of the current study lies in two key domains. First, this study demonstrates that deletion of the Fmrp-KH1 domain is sufficient to cause major mPFC-dependent attention deficits in both males and females, like those observed in both individuals with FXS and in knockout mouse models for FXS. Second, the study shows that deletion of the KH1 domain leads to alterations in the transcriptional profiles within the medial prefrontal cortex (mPFC), which are of potential translational value for subjects with FXS. These findings indicate that attentional testing might be a reliable cross-species tool for investigating the pathophysiology of FXS and a potential readout for pharmacotherapy testing and also highlight hub genes for follow up.
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Claims other papers make about this one
Each is checked against this paper’s own text: does it say what the citing paper says it does?
The deletion of exon 8 in the Fmr1-Δexon 8 rat is sufficient to cause FXS-like traits, such as deficits in sustained visuospatial attention, altered patterns of social interaction, cognitive impairment, and abnormal synaptic plasticity.
“Such deletion is sufficient to cause FXS-like traits, such as deficits in sustained visuospatial attention [34], altered patterns of social interaction, and cognitive impairment [28], together with abnormal synaptic plasticity [32,35,36].”
From Brain Cholesterol Biosynthetic Pathway Is Altered in a Preclinical Model of Fragile X Syndrome (2022) · cites this paper as [34]
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
Cites
Zhang, Y., Chen, K., Sloan, S. A., Bennett, M. L., Scholze, A. R., O'Keeffe, S., Phatnani, H. P., Guarnieri, P., Caneda, C., Ruderisch, N., et al. (2014) · The Journal of Neuroscience · doi:10.1523/jneurosci.1860-14.2014 · Cited by 4,875 · see citing works
FMRP Stalls Ribosomal Translocation on mRNAs Linked to Synaptic Function and Autism
Darnell, J. C., Van Driesche, S. J., Zhang, C., Hung, K. Y. S., Mele, A., Fraser, C. E., Stone, E. F., Chen, C., Fak, J. J., Chi, S. W., et al. (2011) · Cell · doi:10.1016/j.cell.2011.06.013 · Cited by 2,072 · see citing works
Transcriptomic Analysis of Autistic Brain Reveals Convergent Molecular Pathology
Voineagu, I., Wang, X., Johnston, P., Lowe, J. K., Tian, Y., Horvath, S., Mill, J., Cantor, R. M., Blencowe, B. J., & Geschwind, D. H. (2011) · Nature · doi:10.1038/nature10110 · Cited by 1,874 · cited 2× · see citing works
“For this purpose, we created separate transcriptional networks from previously published human cortex tissue (BA 9/41) sampled from control individuals (Voineagu et al. 2011) in order to systematically explore potential species similarities and differences.”
BackgroundMethodIs My Network Module Preserved and Reproducible?
Langfelder, P., Luo, R., Oldham, M. C., & Horvath, S. (2011) · PLoS Computational Biology · doi:10.1371/journal.pcbi.1001057 · Cited by 1,012 · see citing works
Removing technical variability in RNA-seq data using conditional quantile normalization
Hansen, K. D., Irizarry, R. A., & WU, Z. (2012) · Biostatistics · doi:10.1093/biostatistics/kxr054 · Cited by 607 · see citing works
Brookes, K., Xu, X., Chen, W., Zhou, K., Neale, B., Lowe, N., Aneey, R., Franke, B., Gill, M., Ebstein, R., et al. (2006) · Molecular Psychiatry · doi:10.1038/sj.mp.4001869 · Cited by 533 · see citing works
Divergence of human and mouse brain transcriptome highlights Alzheimer disease pathways
Miller, J. A., Horvath, S., & Geschwind, D. H. (2010) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0914257107 · Cited by 480 · see citing works
Osterweil, E. K., Krueger, D. D., Reinhold, K., & Bear, M. F. (2010) · The Journal of Neuroscience · doi:10.1523/jneurosci.3888-10.2010 · Cited by 384 · see citing works
The Pathophysiology of Fragile X (and What It Teaches Us about Synapses)
Bhakar, A. L., Dölen, G., & Bear, M. F. (2012) · Annual Review of Neuroscience · doi:10.1146/annurev-neuro-060909-153138 · Cited by 370 · see citing works
Fragile X syndrome: causes, diagnosis, mechanisms, and therapeutics
Bagni, C., Tassone, F., Neri, G., & Hagerman, R. (2012) · Journal of Clinical Investigation · doi:10.1172/jci63141 · Cited by 321 · see citing works
De Rubeis, S., Pasciuto, E., Li, K. W., Fernández, E., Di Marino, D., Buzzi, A., Ostroff, L. E., Klann, E., Zwartkruis, F. J. T., Komiyama, N. H., et al. (2013) · Neuron · doi:10.1016/j.neuron.2013.06.039 · Cited by 296 · see citing works
Dysregulation and restoration of translational homeostasis in fragile X syndrome
Richter, J. D., Bassell, G. J., & Klann, E. (2015) · Nature Reviews Neuroscience · doi:10.1038/nrn4001 · Cited by 275 · see citing works
Behavioral and neuroanatomical characterization of the <i>Fmr1</i> knockout mouse
Mineur, Y. S., Sluyter, F., de Wit, S., Oostra, B. A., & Crusio, W. E. (2002) · Hippocampus · doi:10.1002/hipo.10005 · Cited by 216 · see citing works
AutismKB: an evidence-based knowledgebase of autism genetics
Xu, L.-M., Li, J.-R., Huang, Y., Zhao, M., Tang, X., & Wei, L. (2012) · Nucleic Acids Research · doi:10.1093/nar/gkr1145 · Cited by 179 · see citing works
A mouse model of the human Fragile X syndrome I304N mutation
Zang, J. B., Nosyreva, E. D., Spencer, C. M., Volk, L. J., Musunuru, K., Zhong, R., Stone, E. F., Yuva-Paylor, L. A., Huber, K. M., Paylor, R., et al. (2009) · PLoS Genetics · doi:10.1371/journal.pgen.1000758 · Cited by 138 · see citing works
Myrick, L. K., Deng, P.-Y., Hashimoto, H., Oh, Y. M., Cho, Y., Poidevin, M. J., Suhl, J. A., Visootsak, J., Cavalli, V., Jin, P., et al. (2015) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1423094112 · Cited by 133 · see citing works
Till, S. M., Asiminas, A., Jackson, A. D., Katsanevaki, D., Barnes, S. A., Osterweil, E. K., Bear, M. F., Chattarji, S., Wood, E. R., Wyllie, D. J. A., et al. (2015) · Human Molecular Genetics · doi:10.1093/hmg/ddv299 · Cited by 109 · see citing works
Therapeutic Strategies in Fragile X Syndrome: From Bench to Bedside and Back
Gross, C., Hoffmann, A., Bassell, G. J., & Berry-Kravis, E. M. (2015) · Neurotherapeutics · doi:10.1007/s13311-015-0355-9 · Cited by 105 · see citing works
Gross, C., Raj, N., Molinaro, G., Allen, A. G., Whyte, A. J., Gibson, J. R., Huber, K. M., Gourley, S. L., & Bassell, G. J. (2015) · Cell Reports · doi:10.1016/j.celrep.2015.03.065 · Cited by 71 · see citing works
Semenova, S. (2012) · Psychopharmacology · doi:10.1007/s00213-011-2458-2 · Cited by 46 · see citing works
Kong, S. W., Sahin, M., Collins, C. D., Wertz, M. H., Campbell, M. G., Leech, J. D., Krueger, D., Bear, M. F., Kunkel, L. M., & Kohane, I. S. (2014) · Molecular Autism · doi:10.1186/2040-2392-5-16 · Cited by 19 · see citing works
Flagged first, then by citations
Research works printed but not linked: 83
- Archer J 1975 Rodent sex differences in emotional and related behavior. Behav Biol. 14: 451– 479. 1100044
- Auclair AL, Besnard J, Newman-Tancredi A, Depoortere R 2009 The five choice serial reaction time task: comparison between Sprague-Dawley and Long-Evans rats on acquisition of task, and sensitivity to phencyclidine. Pharmacol Biochem Behav. 92: 363– 369. 19353758
- Baker KB, Wray SP, Ritter R, Mason S, Lanthorn TH, Savelieva KV 2010 Male and female Fmr1 knockout mice on C57 albino background exhibit spatial learning and memory impairments. Genes Brain Behav. 9: 562– 574. 20398059
- Bakker CE, Verheij C, Willemsen R, Helm R, Oerlemans F, Vermey M, Bygrave A, Hoogeveen AT, Oostra BA, Reyniers E, et al, The Dutch-Belgian Fragile X Consortium 1994 Fmr1 knockout mice: a model to study fragile X mental retardation. Cell. 78: 23– 33. 8033209
- Berzhanskaya J, Phillips MA, Gorin A, Lai C, Shen J, Colonnese MT 2017 Disrupted cortical state regulation in a rat model of fragile X syndrome. Cereb Cortex. 27: 1386– 1400. 26733529 PMC6311986
- Boutros N, Der-Avakian A, Markou A, Semenova S 2017 Effects of early life stress and adolescent ethanol exposure on adult cognitive performance in the 5-choice serial reaction time task in Wistar male rats. Psychopharmacology (Berl). 234: 1549– 1556. 28197651
- Bozdagi O, Sakurai T, Papapetrou D, Wang X, Dickstein DL, Takahashi N, Kajiwara Y, Yang M, Katz AM, Scattoni ML, et al 2010 Haploinsufficiency of the autism-associated Shank3 gene leads to deficits in synaptic function, social interaction, and social communication. Mol Autism. 1: 15. 21167025 PMC3019144
- Bray S, Hirt M, Jo B, Hall SS, Lightbody AA, Walter E, Chen K, Patnaik S, Reiss AL 2011 Aberrant frontal lobe maturation in adolescents with fragile X syndrome is related to delayed cognitive maturation. Biol Psychiatry. 70: 852– 858. 21802660 PMC3191299
- Brown V, Jin P, Ceman S, Darnell JC, O’Donnell WT, Tenenbaum SA, Jin X, Feng Y, Wilkinson KD, Keene JD, et al 2001 Microarray identification of FMRP-associated brain mRNAs and altered mRNA translational profiles in fragile X syndrome. Cell. 107: 477– 487. 11719188
- Burd CG, Dreyfuss G 1994 Conserved structures and diversity of functions of RNA-binding proteins. Science. 265: 615– 621. 8036511
- Cahoy JD, Emery B, Kaushal A, Foo LC, Zamanian JL, Christopherson KS, Xing Y, Lubischer JL, Krieg PA, Krupenko SA, et al 2008 A transcriptome database for astrocytes, neurons, and oligodendrocytes: a new resource for understanding brain development and function. J Neurosci. 28: 264– 278. 18171944 PMC6671143
- Chen J, Bardes EE, Aronow BJ, Jegga AG 2009 ToppGene Suite for gene list enrichment analysis and candidate gene prioritization. Nucleic Acids Res. 37: W305– W311. 19465376 PMC2703978
- Chudasama Y, Passetti F, Rhodes SE, Lopian D, Desai A, Robbins TW 2003 Dissociable aspects of performance on the 5-choice serial reaction time task following lesions of the dorsal anterior cingulate, infralimbic and orbitofrontal cortex in the rat: differential effects on selectivity, impulsivity and compulsivity. Behav Brain Res. 146: 105– 119. 14643464
- Chudasama Y, Robbins TW 2006 Functions of frontostriatal systems in cognition: comparative neuropsychopharmacological studies in rats, monkeys and humans. Biol Psychol. 73: 19– 38. 16546312
- Coffee B, Ikeda M, Budimirovic DB, Hjelm LN, Kaufmann WE, Warren ST 2008 Mosaic FMR1 deletion causes fragile X syndrome and can lead to molecular misdiagnosis: a case report and review of the literature. Am J Med Genet A. 146A: 1358– 1367. 18412117 PMC2697959
- Collins SC, Bray SM, Suhl JA, Cutler DJ, Coffee B, Zwick ME, Warren ST 2010 Identification of novel FMR1 variants by massively parallel sequencing in developmentally delayed males. Am J Med Genet A. 152A: 2512– 2520. 20799337 PMC2946449
- Cornish KM, Munir F, Cross G 2001 Differential impact of the FMR-1 full mutation on memory and attention functioning: a neuropsychological perspective. J Cogn Neurosci. 13: 144– 150. 11224914
- De Boulle K, Verkerk AJ, Reyniers E, Vits L, Hendrickx J, Van Roy B, Van den Bos F, de Graaff E, Oostra BA, Willems PJ 1993 A point mutation in the FMR-1 gene associated with fragile X mental retardation. Nat Genet. 3: 31– 35. 8490650
- De Rubeis S, He X, Goldberg AP, Poultney CS, Samocha K, Cicek AE, Kou Y, Liu L, Fromer M, Walker S, et al 2014 Synaptic, transcriptional and chromatin genes disrupted in autism. Nature. 515: 209– 215. 25363760 PMC4402723
- de Silva MG, Elliott K, Dahl HH, Fitzpatrick E, Wilcox S, Delatycki M, Williamson R, Efron D, Lynch M, Forrest S 2003 Disruption of a novel member of a sodium/hydrogen exchanger family and DOCK3 is associated with an attention deficit hyperactivity disorder-like phenotype. J Med Genet. 40: 733– 740. 14569117 PMC1735283
- Di Marino D, Achsel T, Lacoux C, Falconi M, Bagni C 2014 Molecular dynamics simulations show how the FMRP Ile304Asn mutation destabilizes the KH2 domain structure and affects its function. J Biomol Struct Dyn. 32: 337– 350. 23527791
- Dobin A, Davis CA, Schlesinger F, Drenkow J, Zaleski C, Jha S, Batut P, Chaisson M, Gingeras TR 2013 STAR: ultrafast universal RNA-seq aligner. Bioinformatics. 29: 15– 21. 23104886 PMC3530905
- Dolen G, Osterweil E, Rao BS, Smith GB, Auerbach BD, Chattarji S, Bear MF 2007 Correction of fragile X syndrome in mice. Neuron. 56: 955– 962. 18093519 PMC2199268
- D’Annessa I, Cicconardi F, Marino D In Press. Handling FMRP and its molecular partners: structural insights into fragile X syndrome. Prog Biophys Mol Biol. 30905341
- Engineer CT, Centanni TM, Im KW, Rahebi KC, Buell EP, Kilgard MP 2014 Degraded speech sound processing in a rat model of fragile X syndrome. Brain Res. 1564: 72– 84. 24713347 PMC4034469
- Franceschini A, Szklarczyk D, Frankild S, Kuhn M, Simonovic M, Roth A, Lin J, Minguez P, Bork P, von Mering C, et al 2013 STRING v9.1: protein-protein interaction networks, with increased coverage and integration. Nucleic Acids Res. 41: D808– D815. 23203871 PMC3531103
- Fromer M, Roussos P, Sieberts SK, Johnson JS, Kavanagh DH, Perumal TM, Ruderfer DM, Oh EC, Topol A, Shah HR, et al 2016 Gene expression elucidates functional impact of polygenic risk for schizophrenia. Nat Neurosci. 19: 1442– 1453. 27668389 PMC5083142
- Gronskov K, Brondum-Nielsen K, Dedic A, Hjalgrim H 2011 A nonsense mutation in FMR1 causing fragile X syndrome. Eur J Hum Genet. 19: 489– 491. 21267007 PMC3060329
- Hallahan BP, Craig MC, Toal F, Daly EM, Moore CJ, Ambikapathy A, Robertson D, Murphy KC, Murphy DG 2011 In vivo brain anatomy of adult males with Fragile X syndrome: an MRI study. Neuroimage. 54: 16– 24. 20708694
- Hamilton SM, Green JR, Veeraragavan S, Yuva L, McCoy A, Wu Y, Warren J, Little L, Ji D, Cui X, et al 2014 Fmr1 and Nlgn3 knockout rats: novel tools for investigating autism spectrum disorders. Behav Neurosci. 128: 103– 109. 24773431
- Hammond LS, Macias MM, Tarleton JC, Shashidhar Pai G 1997 Fragile X syndrome and deletions in FMR1: new case and review of the literature. Am J Med Genet. 72: 430– 434. 9375726
- Handt M, Epplen A, Hoffjan S, Mese K, Epplen JT, Dekomien G 2014 Point mutation frequency in the FMR1 gene as revealed by fragile X syndrome screening. Mol Cell Probes. 28: 279– 283. 25171808
- Harony-Nicolas H, Kay M, Hoffmann JD, Klein ME, Bozdagi-Gunal O, Riad M, Daskalakis NP, Sonar S, Castillo PE, Hof PR, et al 2017 Oxytocin improves behavioral and electrophysiological deficits in a novel Shank3-deficient rat. Elife. 6: e18904. 28139198 PMC5283828
- Hellemans J, Mortier G, De Paepe A, Speleman F, Vandesompele J 2007 qBase relative quantification framework and software for management and automated analysis of real-time quantitative PCR data. Genome Biol. 8: R19. 17291332 PMC1852402
- Hoeft F, Carter JC, Lightbody AA, Cody Hazlett H, Piven J, Reiss AL 2010 Region-specific alterations in brain development in one- to three-year-old boys with fragile X syndrome. Proc Natl Acad Sci USA. 107: 9335– 9339. 20439717 PMC2889103
- Hoeft F, Hernandez A, Parthasarathy S, Watson CL, Hall SS, Reiss AL 2007 Fronto-striatal dysfunction and potential compensatory mechanisms in male adolescents with fragile X syndrome. Hum Brain Mapp. 28: 543– 554. 17437282 PMC6871315
- Huber KM, Gallagher SM, Warren ST, Bear MF 2002 Altered synaptic plasticity in a mouse model of fragile X mental retardation. Proc Natl Acad Sci USA. 99: 7746– 7750. 12032354 PMC124340
- Kazdoba TM, Leach PT, Silverman JL, Crawley JN 2014 Modeling fragile X syndrome in the Fmr1 knockout mouse. Intractable Rare Dis Res. 3: 118– 133. 25606362 PMC4298642
- Kenkel WM, Yee JR, Moore K, Madularu D, Kulkarni P, Gamber K, Nedelman M, Ferris CF 2016 Functional magnetic resonance imaging in awake transgenic fragile X rats: evidence of dysregulation in reward processing in the mesolimbic/habenular neural circuit. Transl Psychiatry. 6: e763. 27003189 PMC4872441
- Kondapalli KC, Prasad H, Rao R 2014 An inside job: how endosomal Na(+)/H(+) exchangers link to autism and neurological disease. Front Cell Neurosci. 8: 172. 25002837 PMC4066934
- Krueger DD, Osterweil EK, Chen SP, Tye LD, Bear MF 2011 Cognitive dysfunction and prefrontal synaptic abnormalities in a mouse model of fragile X syndrome. Proc Natl Acad Sci USA. 108: 2587– 2592. 21262808 PMC3038768
- Kulinski J, Besack D, Oleykowski CA, Godwin AK, Yeung AT 2000 CEL I enzymatic mutation detection assay. Biotechniques. 29(44–46): 48. 10907074
- Langfelder P, Horvath S 2008 WGCNA: an R package for weighted correlation network analysis. BMC Bioinformatics. 9: 559. 19114008 PMC2631488
- Lasky-Su J, Neale BM, Franke B, Anney RJ, Zhou K, Maller JB, Vasquez AA, Chen W, Asherson P, Buitelaar J, et al 2008 Genome-wide association scan of quantitative traits for attention deficit hyperactivity disorder identifies novel associations and confirms candidate gene associations. Am J Med Genet B Neuropsychiatr Genet. 147B: 1345– 1354. 18821565
- Leek JT, Johnson WE, Parker HS, Jaffe AE, Storey JD 2012 The sva package for removing batch effects and other unwanted variation in high-throughput experiments. Bioinformatics. 28: 882– 883. 22257669 PMC3307112
- Liao Y, Smyth GK, Shi W 2014 FeatureCounts: an efficient general purpose program for assigning sequence reads to genomic features. Bioinformatics. 30: 923– 930. 24227677
- Lugenbeel KA, Peier AM, Carson NL, Chudley AE, Nelson DL 1995 Intragenic loss of function mutations demonstrate the primary role of FMR1 in fragile X syndrome. Nat Genet. 10: 483– 485. 7670500
- Mar AC, Horner AE, Nilsson SR, Alsio J, Kent BA, Kim CH, Holmes A, Saksida LM, Bussey TJ 2013 The touchscreen operant platform for assessing executive function in rats and mice. Nat Protoc. 8: 1985– 2005. 24051960 PMC4131754
- Maurin T, Zongaro S, Bardoni B 2014 Fragile X syndrome: from molecular pathology to therapy. Neurosci Biobehav Rev. 46(Pt 2): 242– 255. 24462888
- Menon V, Leroux J, White CD, Reiss AL 2004 Frontostriatal deficits in fragile X syndrome: relation to FMR1 gene expression. Proc Natl Acad Sci USA. 101: 3615– 3620. 14993603 PMC373511
- Mueller AJ, Canty-Laird EG, Clegg PD, Tew SR 2017 Cross-species gene modules emerge from a systems biology approach to osteoarthritis. NPJ Syst Biol Appl. 3: 13. 28649440 PMC5460168
- Muir JL, Everitt BJ, Robbins TW 1996 The cerebral cortex of the rat and visual attentional function: dissociable effects of mediofrontal, cingulate, anterior dorsolateral, and parietal cortex lesions on a five-choice serial reaction time task. Cereb Cortex. 6: 470– 481. 8670672
- Myrick LK, Hashimoto H, Cheng X, Warren ST 2015b. Human FMRP contains an integral tandem Agenet (Tudor) and KH motif in the amino terminal domain. Hum Mol Genet. 24: 1733– 1740. 25416280 PMC4381759
- Myrick LK, Nakamoto-Kinoshita M, Lindor NM, Kirmani S, Cheng X, Warren ST 2014 Fragile X syndrome due to a missense mutation. Eur J Hum Genet. 22: 1185– 1189. 24448548 PMC4169535
- Napoli I, Mercaldo V, Boyl PP, Eleuteri B, Zalfa F, De Rubeis S, Di Marino D, Mohr E, Massimi M, Falconi M, et al 2008 The fragile X syndrome protein represses activity-dependent translation through CYFIP1, a new 4E-BP. Cell. 134: 1042– 1054. 18805096
- Newman AM, Liu CL, Green MR, Gentles AJ, Feng W, Xu Y, Hoang CD, Diehn M, Alizadeh AA 2015 Robust enumeration of cell subsets from tissue expression profiles. Nat Methods. 12: 453– 457. 25822800 PMC4739640
- Okray Z, de Esch CE, Van Esch H, Devriendt K, Claeys A, Yan J, Verbeeck J, Froyen G, Willemsen R, de Vrij FM, et al 2015 A novel fragile X syndrome mutation reveals a conserved role for the carboxy-terminus in FMRP localization and function. EMBO Mol Med. 7: 423– 437. 25693964 PMC4403044
- Parikshak NN, Luo R, Zhang A, Won H, Lowe JK, Chandran V, Horvath S, Geschwind DH 2013 Integrative functional genomic analyses implicate specific molecular pathways and circuits in autism. Cell. 155: 1008– 1021. 24267887 PMC3934107
- Pezze M, McGarrity S, Mason R, Fone KC, Bast T 2014 Too little and too much: hypoactivation and disinhibition of medial prefrontal cortex cause attentional deficits. J Neurosci. 34: 7931– 7946. 24899715 PMC4044251
- Pozdnyakova I, Regan L 2005 New insights into Fragile X syndrome. Relating genotype to phenotype at the molecular level. FEBS J. 272: 872– 878. 15670167
- Prasad H, Osei-Owusu J, Rao R 2017 Functional analysis of Na(+)/H(+) exchanger 9 variants identified in patients with autism and epilepsy. Matters (Zur). 2017. PMC5555647 28815171
- Qin M, Kang J, Burlin TV, Jiang C, Smith CB 2005 Postadolescent changes in regional cerebral protein synthesis: an in vivo study in the FMR1 null mouse. J Neurosci. 25: 5087– 5095. 15901791 PMC6724856
- Quartier A, Poquet H, Gilbert-Dussardier B, Rossi M, Casteleyn AS, Portes VD, Feger C, Nourisson E, Kuentz P, Redin C, et al 2017 Intragenic FMR1 disease-causing variants: a significant mutational mechanism leading to Fragile-X syndrome. Eur J Hum Genet. 25: 423– 431. 28176767 PMC5386424
- Risbrough V, Bontempi B, Menzaghi F 2002 Selective immunolesioning of the basal forebrain cholinergic neurons in rats: effect on attention using the 5-choice serial reaction time task. Psychopharmacology (Berl). 164: 71– 81. 12373421
- Ritchie ME, Phipson B, Wu D, Hu Y, Law CW, Shi W, Smyth GK 2015 limma powers differential expression analyses for RNA-sequencing and microarray studies. Nucleic Acids Res. 43: e47. 25605792 PMC4402510
- Robbins TW 2002 The 5-choice serial reaction time task: behavioural pharmacology and functional neurochemistry. Psychopharmacology (Berl). 163: 362– 380. 12373437
- Sanders SJ, He X, Willsey AJ, Ercan-Sencicek AG, Samocha KE, Cicek AE, Murtha MT, Bal VH, Bishop SL, Dong S, et al 2015 Insights into autism spectrum disorder genomic architecture and biology from 71 risk loci. Neuron. 87: 1215– 1233. 26402605 PMC4624267
- Santoro MR, Bray SM, Warren ST 2012 Molecular mechanisms of fragile X syndrome: a twenty-year perspective. Annu Rev Pathol. 7: 219– 245. 22017584
- Schneider CA, Rasband WS, Eliceiri KW 2012 NIH Image to ImageJ: 25 years of image analysis. Nat Methods. 9: 671– 675. 22930834 PMC5554542
- Shannon P, Markiel A, Ozier O, Baliga NS, Wang JT, Ramage D, Amin N, Schwikowski B, Ideker T 2003 Cytoscape: a software environment for integrated models of biomolecular interaction networks. Genome Res. 13: 2498– 2504. 14597658 PMC403769
- Sidorov MS, Krueger DD, Taylor M, Gisin E, Osterweil EK, Bear MF 2014 Extinction of an instrumental response: a cognitive behavioral assay in Fmr1 knockout mice. Genes Brain Behav. 13: 451– 458. 24684608 PMC4182346
- Sitzmann AF, Hagelstrom RT, Tassone F, Hagerman RJ, Butler MG 2018 Rare FMR1 gene mutations causing fragile X syndrome: a review. Am J Med Genet A. 176: 11– 18. 29178241 PMC6697153
- Sorensen EM, Bertelsen F, Weikop P, Skovborg MM, Banke T, Drasbek KR, Scheel-Kruger J 2015 Hyperactivity and lack of social discrimination in the adolescent Fmr1 knockout mouse. Behav Pharmacol. 26: 733– 740. 26110222
- Suhl JA, Warren ST 2015 Single-nucleotide mutations in FMR1 reveal novel functions and regulatory mechanisms of the fragile X syndrome protein FMRP. J Exp Neurosci. 9: 35– 41. 26819560 PMC4720182
- Tariq MA, Kim HJ, Jejelowo O, Pourmand N 2011 Whole-transcriptome RNAseq analysis from minute amount of total RNA. Nucleic Acids Res. 39: e120. 21737426 PMC3185437
- Tucker B, Richards RI, Lardelli M 2006 Contribution of mGluR and Fmr1 functional pathways to neurite morphogenesis, craniofacial development and fragile X syndrome. Hum Mol Genet. 15: 3446– 3458. 17065172
- Valverde R, Edwards L, Regan L 2008 Structure and function of KH domains. FEBS J. 275: 2712– 2726. 18422648
- Vasilyev N, Polonskaia A, Darnell JC, Darnell RB, Patel DJ, Serganov A 2015 Crystal structure reveals specific recognition of a G-quadruplex RNA by a beta-turn in the RGG motif of FMRP. Proc Natl Acad Sci USA. 112: E5391– E5400. 26374839 PMC4593078
- Wijetunge LS, Angibaud J, Frick A, Kind PC, Nagerl UV 2014 Stimulated emission depletion (STED) microscopy reveals nanoscale defects in the developmental trajectory of dendritic spine morphogenesis in a mouse model of fragile X syndrome. J Neurosci. 34: 6405– 6412. 24790210 PMC4004821
- Xiong HY, Alipanahi B, Lee LJ, Bretschneider H, Merico D, Yuen RK, Hua Y, Gueroussov S, Najafabadi HS, Hughes TR, et al 2015 RNA splicing. The human splicing code reveals new insights into the genetic determinants of disease. Science. 347: 1254806. 25525159 PMC4362528
- Zalfa F, Eleuteri B, Dickson KS, Mercaldo V, De Rubeis S, di Penta A, Tabolacci E, Chiurazzi P, Neri G, Grant SG, et al 2007 A new function for the fragile X mental retardation protein in regulation of PSD-95 mRNA stability. Nat Neurosci. 10: 578– 587. 17417632 PMC2804293
- Zeisel A, Munoz-Manchado AB, Codeluppi S, Lonnerberg P, La Manno G, Jureus A, Marques S, Munguba H, He L, Betsholtz C, et al 2015 Brain structure. Cell types in the mouse cortex and hippocampus revealed by single-cell RNA-seq. Science. 347: 1138– 1142. 25700174
- Zhang F, Kang Y, Wang M, Li Y, Xu T, Yang W, Song H, Wu H, Shu Q, Jin P 2018 Fragile X mental retardation protein modulates the stability of its m6A-marked messenger RNA targets. Hum Mol Genet. 27: 3936– 3950. 30107516 PMC6216232
Cited by
Sorted by citations
Spratt, P. W. E., Ben-Shalom, R., Keeshen, C. M., Burke, K. J., Clarkson, R. L., Sanders, S. J., & Bender, K. J. (2019) · Neuron · doi:10.1016/j.neuron.2019.05.037 · Cited by 244 · see citing works
Hyperexcitability and homeostasis in fragile X Syndrome.
Liu, X., Kumar, V., Tsai, N.-P., & Auerbach, B. D. (2022) · Frontiers in Molecular Neuroscience · doi:10.3389/fnmol.2021.805929 · Cited by 53 · see citing works
Psilocybin mitigates the cognitive deficits observed in a rat model of Fragile X syndrome
Buzzelli, V., Carbone, E., Manduca, A., Schiavi, S., Feo, A., Perederiy, J. V., Ambert, K. H., Hausman, M., & Trezza, V. (2023) · Psychopharmacology · doi:10.1007/s00213-022-06286-3 · Cited by 22 · see citing works
Brain Cholesterol Biosynthetic Pathway Is Altered in a Preclinical Model of Fragile X Syndrome
Parente, M., Tonini, C., Buzzelli, V., Carbone, E., Trezza, V., & Pallottini, V. (2022) · International Journal of Molecular Sciences · doi:10.3390/ijms23063408 · Cited by 11 · see citing works
- Authors
- Golden, C. E. M., Breen, M. S., Koro, L., Sonar, S., Niblo, K., Browne, A., Burlant, N., Di Marino, D., De Rubeis, S., Baxter, M. G., Buxbaum, J. D., & Harony-Nicolas, H.
- Affiliations
- Icahn School of Medicine at Mount Sinai (US)
- Faculty of Biomedical Sciences, Institute of Computational Science, Center for Computational Medicine in Cardiology, Università della Svizzera Italiana (USI), Lugano, Switzerland
- Department of Psychiatry, Icahn School of Medicine at Mount Sinai, New York, NY, USA
- Corresponding author
- Buxbaum, Joseph D
- ORCID
- Venue
- Cerebral Cortex
- Publisher
- Oxford University Press (OUP)
- Published
- 2019-03-16
- Volume
- 29
- Issue
- 5
- Pages
- 2228-2244
- ISSN
- 1047-3211 (ISSN-L)
- 1460-2199
- PMC
- PMC6458915
- OpenAlex
- W2950095747
- Cited by
- 29
- References
- 21
- Citations by year
- 2026: 4 · 2025: 3 · 2024: 4 · 2022: 6 · 2021: 4 · 2020: 6 · 2019: 1 · 2017: 1
- FWCI
- 2.56
- Type
- journal article
- Language
- en
- Open access
- hybrid
- doi.org
- Licence
- Locations
- Cerebral Cortex (publishedVersion, cc-by-nc)
- bioRxiv (Cold Spring Harbor Laboratory) (acceptedVersion, cc-by-nc-nd)
- Europe PMC (PubMed Central) (publishedVersion, cc-by-nc)
- PubMed Central (publishedVersion, cc-by-nc)
- PubMed (publishedVersion)
- Università Politecnica delle Marche (Università Politecnica delle Marche) (submittedVersion)
- Funders
- Autism Speaks
- National Institutes of Health (1r01mh101584-01a1)
- National Institute of Mental Health (R01-MH101584, F31MH115656)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Genetics and Neurodevelopmental Disorders
- Life Sciences › Neuroscience › Cognitive Neuroscience › Autism Spectrum Disorder Research
- Life Sciences › Neuroscience › Developmental Neuroscience › Williams Syndrome Research
- Keywords
- fragile X syndrome, FMR1 gene, FMRP, exon 8 deletion, attention deficits, gene expression changes, medial prefrontal cortex, gene co-expression network, hub genes, therapeutic target, CGG repeat expansion, autism spectrum disorder
- MeSH terms
- Animals, Attention, Attention Deficit Disorder with Hyperactivity, Disease Models, Animal, Female, Fragile X Syndrome, Gene Expression Regulation, Male, Rats, Sprague-Dawley, Prefrontal Cortex, Fragile X Mental Retardation Protein, Fragile X Messenger Ribonucleoprotein 1, Gene Regulatory Networks, Rats, Transgenic
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review