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The DOI matches its Crossref record; 1 of the 1 references it cites were found in a registry or an index.

Proteins and DNA elements essential for the CRISPR adaptation process in Escherichia coli

Yosef, Ido, Goren, Moran G., Qimron, Udi·2012·Nucleic Acids Research
DOI 10.1093/nar/gks216PMC PMC3384332
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  • Leader sequences have a length of approximately 500 bp, stand upstream of CRISPR loci, and carry promoter elements and signals for CRISPR systems adaptation that are crucial to crRNA transcription and the successful integration of foreign genetic material into CRISPR sequences.

    “These leader sequences have a length of approximately 500 bp and carry promoter elements and signals for CRISPR systems adaptation that are crucial to the transcription of crRNA (CRISPR RNA) and the successful integration of foreign genetic material into CRISPR sequences [11,12].”

    From CRISPR-Cas: Converting A Bacterial Defence Mechanism into A State-of-the-Art Genetic Manipulation Tool (2019) · cites this paper as [12]

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  • Both Cas1 and Cas2 are required for adaptation because expression of Cas1 or Cas2 on their own does not potentiate spacer acquisition.

    “Both proteins are required for this step since the expression of Cas1 or Cas2 on their own does not potentiate spacer acquisition [12].”

    From CRISPR-Cas: Converting A Bacterial Defence Mechanism into A State-of-the-Art Genetic Manipulation Tool (2019) · cites this paper as [12]

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Citations

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Research works printed but not linked: 26

  1. Marraffini, 2008, CRISPR interference limits horizontal gene transfer in staphylococci by targeting DNA, Science, 322, 1843, 10.1126/science.1165771 · DOI · Paper page
  2. Barrangou, 2007, CRISPR provides acquired resistance against viruses in prokaryotes, Science, 315, 1709, 10.1126/science.1138140 · DOI · Paper page
  3. Brouns, 2008, Small CRISPR RNAs guide antiviral defense in prokaryotes, Science, 321, 960, 10.1126/science.1159689 · DOI · Paper page
  4. Hale, 2009, RNA-guided RNA cleavage by a CRISPR RNA-Cas protein complex, Cell, 139, 945, 10.1016/j.cell.2009.07.040 · DOI · Paper page
  5. Deveau, 2010, CRISPR/Cas system and its role in phage-bacteria interactions, Annu. Rev. Microbiol., 64, 475, 10.1146/annurev.micro.112408.134123 · DOI
  6. Sorek, 2008, CRISPR–a widespread system that provides acquired resistance against phages in bacteria and archaea, Nat. Rev. Microbiol., 6, 181, 10.1038/nrmicro1793 · DOI
  7. Marraffini, 2010, CRISPR interference: RNA-directed adaptive immunity in bacteria and archaea, Nat. Rev. Genet., 11, 181, 10.1038/nrg2749 · DOI · Paper page
  8. Makarova, 2011, Evolution and classification of the CRISPR-Cas systems, Nat. Rev. Microbiol., 9, 467, 10.1038/nrmicro2577 · DOI · Paper page
  9. van der Ploeg, 2009, Analysis of CRISPR in Streptococcus mutans suggests frequent occurrence of acquired immunity against infection by M102-like bacteriophages, Microbiology, 155, 1966, 10.1099/mic.0.027508-0 · DOI
  10. Bhaya, 2011, CRISPR-Cas systems in bacteria and archaea: versatile small RNAs for adaptive defense and regulation, Annu. Rev. Genet., 45, 273, 10.1146/annurev-genet-110410-132430 · DOI · Paper page
  11. Wiedenheft, 2009, Structural basis for DNase activity of a conserved protein implicated in CRISPR-mediated genome defense, Structure, 17, 904, 10.1016/j.str.2009.03.019 · DOI · Paper page
  12. Babu, 2011, A dual function of the CRISPR-Cas system in bacterial antivirus immunity and DNA repair, Mol. Microbiol., 79, 484, 10.1111/j.1365-2958.2010.07465.x · DOI · Paper page
  13. Beloglazova, 2008, A novel family of sequence-specific endoribonucleases associated with the clustered regularly interspaced short palindromic repeats, J. Biol. Chem., 283, 20361, 10.1074/jbc.M803225200 · DOI
  14. Deveau, 2008, Phage response to CRISPR-encoded resistance in Streptococcus thermophilus, J. Bacteriol., 190, 1390, 10.1128/JB.01412-07 · DOI
  15. Bolotin, 2005, Clustered regularly interspaced short palindrome repeats (CRISPRs) have spacers of extrachromosomal origin, Microbiology, 151, 2551, 10.1099/mic.0.28048-0 · DOI · Paper page
  16. Mojica, 2009, Short motif sequences determine the targets of the prokaryotic CRISPR defence system, Microbiology, 155, 733, 10.1099/mic.0.023960-0 · DOI · Paper page
  17. Díez-Villaseñor, 2010, Diversity of CRISPR loci in Escherichia coli, Microbiology, 156, 1351, 10.1099/mic.0.036046-0 · DOI
  18. Pougach, 2010, Transcription, processing and function of CRISPR cassettes in Escherichia coli, Mol. Microbiol., 77, 1367, 10.1111/j.1365-2958.2010.07265.x · DOI
  19. Yosef, 2011, High-temperature protein G is essential for activity of the Escherichia coli clustered regularly interspaced short palindromic repeats (CRISPR)/Cas system, Proc. Natl Acad. Sci. USA, 108, 20136, 10.1073/pnas.1113519108 · DOI
  20. Pul, 2010, Identification and characterization of E. coli CRISPR-cas promoters and their silencing by H-NS, Mol. Microbiol., 75, 1495, 10.1111/j.1365-2958.2010.07073.x · DOI · Paper page
  21. Kool, 1974, Isolation and characterization of a copy mutant of the bacteriocinogenic plasmid Clo DF13, J. Bacteriol., 120, 569, 10.1128/JB.120.2.569-578.1974 · DOI
  22. Crooks, 2004, WebLogo: a sequence logo generator, Genome Res., 14, 1188, 10.1101/gr.849004 · DOI
  23. Gudbergsdottir, 2011, Dynamic properties of the sulfolobus CRISPR/Cas and CRISPR/Cmr systems when challenged with vector-borne viral and plasmid genes and protospacers, Mol. Microbiol., 79, 35, 10.1111/j.1365-2958.2010.07452.x · DOI
  24. Sharan, 2009, Recombineering: a homologous recombination-based method of genetic engineering, Nat. Protoc., 4, 206, 10.1038/nprot.2008.227 · DOI
  25. Datta, 2006, A set of recombineering plasmids for gram-negative bacteria, Gene, 379, 109, 10.1016/j.gene.2006.04.018 · DOI
  26. Datsenko, 2000, One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products, Proc. Natl Acad. Sci. USA, 97, 6640, 10.1073/pnas.120163297 · DOI

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Metadata

Authors
Yosef, I., Goren, M. G., & Qimron, U.
Affiliations
Department of Clinical Microbiology and Immunology, Sackler School of Medicine, Tel Aviv University, Tel Aviv, 69978, Israel
Venue
Nucleic Acids Research
Publisher
Oxford University Press (OUP)
Published
2012-02-08
Volume
40
Issue
12
Pages
5569-5576
ISSN
  • 1362-4962
  • 0305-1048
DOI
10.1093/nar/gks216
PMC
PMC3384332
Cited by
655
References
1
Language
en
Licence
creativecommons.org/licenses/by-nc/3.0 (vor, 1735 d)

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