The DOI matches its Crossref record; 2 of the 2 references it cites were found in a registry or an index.
New developments in the ATSAS program package for small-angle scattering data analysis
Open accessAbstract
New developments in the program package ATSAS(version 2.4) for the processing and analysis of isotropic small-angle X-ray and neutron scattering data are described. They include (i) multiplatform data manipulation and display tools, (ii) programs for automated data processing and calculation of overall parameters, (iii) improved usage of high- and low-resolution models from other structural methods, (iv) new algorithms to build three-dimensional models from weakly interacting oligomeric systems and complexes, and (v) enhanced tools to analyse data from mixtures and flexible systems. The new ATSAS release includes installers for current major platforms (Windows, Linux and Mac OSX) and provides improved indexed user documentation. The web-related developments, including a user discussion forum and a widened online access to run ATSAS programs, are also presented.
Overview
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Verification
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
Citations
Cites
Solving Least Squares Problems
Lawson, C. L., & Hanson, R. J. (1995) · doi:10.1137/1.9781611971217 · Cited by 7,103
DAMMIF , a program for rapid ab-initio shape determination in small-angle scattering
Franke, D., & Svergun, D. I. (2009) · Journal of Applied Crystallography · doi:10.1107/s0021889809000338 · Cited by 2,021
Self-citation
Cited by
Crystal Structures of Membrane Transporter MmpL3, an Anti-TB Drug Target
Zhang, B., Li, J., Yang, X., Wu, L., Zhang, J., Yang, Y., Zhao, Y., Zhang, L., Yang, X., Yang, X., et al. (2019) · Cell · doi:10.1016/j.cell.2019.01.003 · Cited by 263
Structural Mechanism for Cargo Recognition by the Retromer Complex
Lucas, M., Gershlick, D. C., Vidaurrazaga, A., Rojas, A. L., Bonifacino, J. S., & Hierro, A. (2016) · Cell · doi:10.1016/j.cell.2016.10.056 · Cited by 223
Panjkovich, A., & Svergun, D. I. (2016) · Physical Chemistry Chemical Physics · doi:10.1039/c5cp04540a · Cited by 204
Self-citationMachine Learning on a Robotic Platform for the Design of Polymer–Protein Hybrids
Tamasi, M. J., Patel, R. A., Borca, C. H., Kosuri, S., Mugnier, H., Upadhya, R., Murthy, N. S., Webb, M. A., & Gormley, A. J. (2022) · Advanced Materials · doi:10.1002/adma.202201809 · Cited by 177
LaRochelle, J. R., Fodor, M., Vemulapalli, V., Mohseni, M., Wang, P., Stams, T., LaMarche, M. J., Chopra, R., Acker, M. G., & Blacklow, S. C. (2018) · Nature Communications · doi:10.1038/s41467-018-06823-9 · Cited by 167
Repulsive guidance molecule is a structural bridge between neogenin and bone morphogenetic protein
Healey, E. G., Bishop, B., Elegheert, J., Bell, C. H., Padilla-Parra, S., & Siebold, C. (2015) · Nature Structural & Molecular Biology · doi:10.1038/nsmb.3016 · Cited by 112
Structural basis of STAT2 recognition by IRF9 reveals molecular insights into ISGF3 function
Rengachari, S., Groiss, S., Devos, J. M., Caron, E., Grandvaux, N., & Panne, D. (2018) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1718426115 · Cited by 91
Allosteric Inhibition of Human Immunodeficiency Virus Integrase
Gupta, K., Brady, T., Dyer, B. M., Malani, N., Hwang, Y., Male, F., Nolte, R. T., Wang, L., Velthuisen, E., Jeffrey, J., et al. (2014) · Journal of Biological Chemistry · doi:10.1074/jbc.m114.551119 · Cited by 81
In-depth analysis of subclass-specific conformational preferences of IgG antibodies
Tian, X., Vestergaard, B., Thorolfsson, M., Yang, Z., Rasmussen, H. B., & Langkilde, A. E. (2015) · IUCrJ · doi:10.1107/s205225251402209x · Cited by 78
Small-angle X-ray scattering-derived structure of the HIV-1 5′ UTR reveals 3D tRNA mimicry
Jones, C. P., Cantara, W. A., Olson, E. D., & Musier-Forsyth, K. (2014) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1319658111 · Cited by 71
LaRochelle, J. R., Fodor, M., Xu, X., Durzynska, I., Fan, L., Stams, T., Chan, H. M., LaMarche, M. J., Chopra, R., Wang, P., et al. (2016) · Biochemistry · doi:10.1021/acs.biochem.5b01287 · Cited by 70
Antiviral signalling by a cyclic nucleotide activated CRISPR protease
Rouillon, C., Schneberger, N., Chi, H., Blumenstock, K., Da Vela, S., Ackermann, K., Moecking, J., Peter, M. F., Boenigk, W., Seifert, R., et al. (2023) · Nature · doi:10.1038/s41586-022-05571-7 · Cited by 66
Self-citationStructural insights into p300 regulation and acetylation-dependent genome organisation
Ibrahim, Z., Wang, T., Destaing, O., Salvi, N., Hoghoughi, N., Chabert, C., Rusu, A., Gao, J., Feletto, L., Reynoird, N., et al. (2022) · Nature Communications · doi:10.1038/s41467-022-35375-2 · Cited by 64
Structural Basis for Draxin-Modulated Axon Guidance and Fasciculation by Netrin-1 through DCC
Liu, Y., Bhowmick, T., Liu, Y., Gao, X., Mertens, H. D. T., Svergun, D. I., Xiao, J., Zhang, Y., Wang, J.-H., & Meijers, R. (2018) · Neuron · doi:10.1016/j.neuron.2018.02.010 · Cited by 60
Self-citationsAβPPα is a Potent Endogenous Inhibitor of BACE1
Peters-Libeu, C., Campagna, J., Mitsumori, M., Poksay, K. S., Spilman, P., Sabogal, A., Bredesen, D. E., & John, V. (2015) · Journal of Alzheimer's Disease · doi:10.3233/jad-150282 · Cited by 58
Ilari, A., Alaleona, F., Tria, G., Petrarca, P., Battistoni, A., Zamparelli, C., Verzili, D., Falconi, M., & Chiancone, E. (2014) · Biochimica et Biophysica Acta (BBA) - General Subjects · doi:10.1016/j.bbagen.2013.10.010 · Cited by 55
Self-citationEpsin and Sla2 form assemblies through phospholipid interfaces
Garcia-Alai, M. M., Heidemann, J., Skruzny, M., Gieras, A., Mertens, H. D. T., Svergun, D. I., Kaksonen, M., Uetrecht, C., & Meijers, R. (2018) · Nature Communications · doi:10.1038/s41467-017-02443-x · Cited by 52
Self-citationStructural insights into the architecture and membrane interactions of the conserved COMMD proteins
Healy, M. D., Hospenthal, M. K., Hall, R. J., Chandra, M., Chilton, M., Tillu, V., Chen, K.-E., Celligoi, D. J., McDonald, F. J., Cullen, P. J., et al. (2018) · eLife · doi:10.7554/elife.35898 · Cited by 50
Molecular crowding favors reactivity of a human ribozyme under physiological ionic conditions
Strulson, C. A., Yennawar, N. H., Rambo, R. P., & Bevilacqua, P. C. (2013) · Biochemistry · doi:10.1021/bi400816s · Cited by 46
Kwon, D. H., Kim, S., Jung, Y. O., Roh, K.-H., Kim, L., Kim, B.-W., Hong, S. B., Lee, I. Y., Song, J. H., Lee, W. C., et al. (2017) · Autophagy · doi:10.1080/15548627.2016.1243199 · Cited by 43
Protein quaternary structures in solution are a mixture of multiple forms
Marciano, S., Dey, D., Listov, D., Fleishman, S. J., Sonn-Segev, A., Mertens, H., Busch, F., Kim, Y., Harvey, S. R., Wysocki, V. H., et al. (2022) · Chemical Science · doi:10.1039/d2sc02794a · Cited by 41
Self-citationAllosteric inhibition of the guanine nucleotide exchange factor DOCK5 by a small molecule
Ferrandez, Y., Zhang, W., Peurois, F., Akendengué, L., Blangy, A., Zeghouf, M., & Cherfils, J. (2017) · Scientific Reports · doi:10.1038/s41598-017-13619-2 · Cited by 37
Bucher, M., Niebling, S., Han, Y., Molodenskiy, D., Hassani Nia, F., Kreienkamp, H.-J., Svergun, D., Kim, E., Kostyukova, A. S., Kreutz, M. R., et al. (2021) · eLife · doi:10.7554/elife.66165 · Cited by 33
Self-citationHeirbaut, M., Lermyte, F., Martin, E. M., Beelen, S., Sobott, F., Strelkov, S. V., & Weeks, S. D. (2017) · Journal of Biological Chemistry · doi:10.1074/jbc.m116.773515 · Cited by 28
“The SAXS frames were processed using AUTORG and GNOM, both part of the ATSAS package (56).”
MethodDe Nardis, C., Lössl, P., van den Biggelaar, M., Madoori, P. K., Leloup, N., Mertens, K., Heck, A. J. R., & Gros, P. (2017) · Journal of Biological Chemistry · doi:10.1074/jbc.m116.758862 · Cited by 24
Pham, G. H., Rana, A. S. J. B., Korkmaz, E. N., Trang, V. H., Cui, Q., & Strieter, E. R. (2016) · Protein Science · doi:10.1002/pro.2834 · Cited by 21
Gupta, K., Allen, A., Giraldo, C., Eilers, G., Sharp, R., Hwang, Y., Murali, H., Cruz, K., Janmey, P., Bushman, F., et al. (2021) · Structure · doi:10.1016/j.str.2020.12.001 · Cited by 19
Wen, B., Peng, J., Zuo, X., Gong, Q., & Zhang, Z. (2014) · Biophysical Journal · doi:10.1016/j.bpj.2014.07.005 · Cited by 20
The domain swapping of human cystatin C induced by synchrotron radiation
Taube, M., Pietralik, Z., Szymanska, A., Szutkowski, K., Clemens, D., Grubb, A., & Kozak, M. (2019) · Scientific Reports · doi:10.1038/s41598-019-44811-1 · Cited by 20
Conservation of tRNA mimicry in the 5′-untranslated region of distinct HIV-1 subtypes
Comandur, R., Olson, E. D., & Musier-Forsyth, K. (2017) · RNA · doi:10.1261/rna.062182.117 · Cited by 17
Photocobilins integrate B12 and bilin photochemistry for enzyme control
Zhang, S., Jeffreys, L. N., Poddar, H., Yu, Y., Liu, C., Patel, K., Johannissen, L. O., Zhu, L., Cliff, M. J., Yan, C., et al. (2024) · Nature Communications · doi:10.1038/s41467-024-46995-1 · Cited by 13
The cytoplasmic tail of myelin protein zero induces morphological changes in lipid membranes
Krokengen, O. C., Touma, C., Mularski, A., Sutinen, A., Dunkel, R., Ytterdal, M., Raasakka, A., Mertens, H. D. T., Simonsen, A. C., & Kursula, P. (2024) · Biochimica et Biophysica Acta (BBA) - Biomembranes · doi:10.1016/j.bbamem.2024.184368 · Cited by 7
Self-citationHay, I. M., Shamin, M., Caroe, E. R., Mohammed, A. S. A., Svergun, D. I., Jeffries, C. M., Graham, S. C., Sharpe, H. J., & Deane, J. E. (2023) · Journal of Biological Chemistry · doi:10.1016/j.jbc.2022.102750 · Cited by 7
Self-citationFelix, J., Bumba, L., Liesche, C., Fraudeau, A., Rébeillé, F., El Khoury, J. Y., Huard, K., Gallet, B., Moriscot, C., Kleman, J.-P., et al. (2022) · Nature Communications · doi:10.1038/s41467-022-32992-9 · Cited by 7
Dey, M., Gupta, A., Badmalia, M. D., Ashish, & Sharma, D. (2025) · International Journal of Biological Macromolecules · doi:10.1016/j.ijbiomac.2024.138614 · Cited by 5
Protein Quaternary Structures in Solution are a Mixture of Multiple forms
Marciano, S., Dey, D., Listov, D., Fleishman, S. J., Sonn-Segev, A., Mertens, H., Busch, F., Kim, Y., Harvey, S. R., Wysocki, V. H., et al. (2022) · doi:10.1101/2022.03.30.486392 · Cited by 3
Self-citationNanobodies as tools for studying human frataxin biology
Pignataro, M. F., Fernández, N. B., Garay-Alvarez, A., Pavan, M. F., Molina, R., Muñoz, I. G., Grossi, J., Noguera, M., Vila, A., García, A. E., et al. (2026) · Communications Biology · doi:10.1038/s42003-025-09458-x · Cited by 2
Klimenko, V., Reiners, J., Applegate, V., Reimann, K., Hoeppner, A., Smits, S. H. J., & Nowack, E. C. M. (2025) · doi:10.1101/2025.01.15.633182
Metadata
- Authors
- Petoukhov, M. V., Franke, D., Shkumatov, A. V., Tria, G., Kikhney, A. G., Gajda, M., Gorba, C., Mertens, H. D. T., Konarev, P. V., & Svergun, D. I.
- Venue
- Journal of Applied Crystallography
- Published
- 2012-03-15
- Volume
- 45
- Issue
- 2
- Pages
- 342-350
- ISSN
- 0021-8898 (ISSN-L)
- OpenAlex
- W2164361934
- Cited by
- 1,903
- References
- 2
- FWCI
- 63.57
- Type
- journal article
- Language
- en
- Open access
- hybrid
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review
Data sources
Bibliographic data: Semantic Scholar, OpenAlex, Crossref.
Contains information from the Semantic Scholar Academic Graph Datasets, made available under the ODC Attribution License (ODC-BY 1.0).
Semantic Scholar’s data is described in: Kinney, R., et al. (2023). The Semantic Scholar Open Data Platform. arXiv:2301.10140.