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Lysosomal cholesterol activates mTORC1 via an SLC38A9–Niemann-Pick C1 signaling complex
Open accessAbstract
The mechanistic target of rapamycin complex 1 (mTORC1) protein kinase is a master growth regulator that becomes activated at the lysosome in response to nutrient cues. Here, we identify cholesterol, an essential building block for cellular growth, as a nutrient input that drives mTORC1 recruitment and activation at the lysosomal surface. The lysosomal transmembrane protein, SLC38A9, is required for mTORC1 activation by cholesterol through conserved cholesterol-responsive motifs. Moreover, SLC38A9 enables mTORC1 activation by cholesterol independently from its arginine-sensing function. Conversely, the Niemann-Pick C1 (NPC1) protein, which regulates cholesterol export from the lysosome, binds to SLC38A9 and inhibits mTORC1 signaling through its sterol transport function. Thus, lysosomal cholesterol drives mTORC1 activation and growth signaling through the SLC38A9-NPC1 complex.
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“mTORC1 is regulated by a wide range of nutrients and hormonal cues, most notably the availability of amino acids, but also glucose, oxygen, and cholesterol 1–3.”
From Targeting the biology of aging with mTOR inhibitors (2023) · cites this paper as [1]
Experimental — accuracy not yet measuredIn the citing paper
“and comparisons of circulating testosterone between vegans and omnivores have revealed no differences [132].”
From Nutritional Considerations for the Vegan Athlete (2023) · cites this paper as [132]
In the citing paper
“However, there is currently no evidence suggesting that vegans are deficient in the fat-soluble vitamins, and comparisons of circulating testosterone between vegans and omnivores have revealed no differences [132].”
From Nutritional Considerations for the Vegan Athlete (2023) · cites this paper as [132]
In the citing paper
“Additionally, NPC1 has been implicated in cholesterol-dependent signaling to mTORC1 through SLC38A9 (Castellano et al., 2017)”
From Signal integration in the (m)TORC1 growth pathway (2018) · cites this paper as Castellano et al., 2017
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Jefcoate, C. R. E., Larsen, M. C., Song, Y., Maguire, M., & Sheibani, N. (2025) · International Journal of Molecular Sciences · doi:10.3390/ijms26052011 · Cited by 2
“The cholesterol-Slc38a9 complex recruits a multiprotein complex; the mTORC1 complex [88,89].”
Gut-derived hormones in insects
Rewitz, K. (2025) · Elsevier eBooks · doi:10.1016/b978-0-323-95424-2.00014-5 · Cited by 2
Xiong, X., Lv, D., Liu, Y., et al. (2019) · British Journal Of Nutrition · doi:10.1017/s0007114519002629 · Cited by 1
Zooming in on the cell biology of disease
Perera, R. M. (2021) · Molecular Biology of the Cell · doi:10.1091/mbc.e21-09-0459 · Cited by 1
“Through collaboration with colleagues, we have helped to uncover how autophagy and lysosomes contribute to cellular differentiation, exosome biogenesis, and nutrient sensing (AltshulerKeylin et al., 2016; Castellano et al., 2017; Kilinc et al., 2021).”
BackgroundBirolini, G., Valenza, M., Paolo, E. D., Vezzoli, E., Talpo, F., Maniezzi, C., Caccia, C., Leoni, V., Bocchi, V. D., Conforti, P., et al. (2020) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2020.05.13.092742 · Cited by 1
“Moreover, an increase in lysosomal cholesterol has been reported to activate mTORC1 (65), and cholesterol is reduced in HD lysosomes (66).”
BackgroundSchmeisser, K., Kaptan, D., Raghuraman, B. K., Shevchenko, A., Penkov, S., & Kurzchalia, T. (2022) · bioRxiv · doi:10.1101/2022.08.26.505407 · Cited by 2
“in vitro [16], during dauer exit to push protein synthesis and growth.”
BackgroundInfluentialMalonyl-CoA is an ancient physiological ATP-competitive mTORC1 inhibitorPreprint
Nicastro, R., Brohée, L., Alba, J., Nüchel, J., Figlia, G., Kipschull, S., Gollwitzer, P., Romero‐Pozuelo, J., Fernandes, S., Lamprakis, A. A., et al. (2022) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2022.11.06.515351 · Cited by 1
Role of lysosome-associated membrane protein, Lamp1, in Drosophila melanogaster
Chaudhry, N. Y. (2023) · doi:10.31274/td-20240617-261 · Cited by 1
Senescent cell survival relies on upregulation of lysosomal quality control mechanismsPreprint
Curnock, R., & Carroll, B. (2025) · bioRxiv · doi:10.1101/2025.03.31.646397 · Cited by 1
“…elegantly demonstrated the role of the lysosome in detecting cholesterol and identified cholesterol sensing machinery that promote the recruitment of mTORC1 to lysosomes (Bayly-Jones et al., 2024; Castellano et al., 2017; Lim et al., 2019; Shin et al., 2022; Xiong et al., 2025; Zhao et al., 2025).”
Papers of note in Science 355 (6331)
VanHook, A. M. (2017) · Science Signaling · doi:10.1126/scisignal.aan2959
Yambire, K. F. (2018) · eDiss (Georg-August-Universität Göttingen) · doi:10.53846/goediss-7142
Andrade, M. L. (2019) · Digital Library of Theses and Dissertations (Universidade de São Paulo) · doi:10.11606/t.42.2019.tde-18092019-161605
Organelle dysfunction modulates cholesterol biosynthesis pathway
Pereyra, L. (2019) · eDiss (Georg-August-Universität Göttingen) · doi:10.53846/goediss-7666
Dzichenka, Y. U., Horetski, M. S., Faletrov, Y. V., Yantsevich, А. V., Shkumatov, V. M., & Usanov, S. A. (2020) · Doklady of the National Academy of Sciences of Belarus · doi:10.29235/1561-8323-2020-64-5-558-566
The Mammalian Target of Rapamycin Complex 1 (mTORC1): An Ally of M. tuberculosis in Host Cells
Bruiners, N., Guerrini, V., & Gennaro, M. L. (2020) · Springer eBooks · doi:10.1007/978-3-030-56905-1_3
Golden, C. K. (2021) · Spectrum Research Repository (Concordia University)
Slade, L., & Pulinilkunnil, T. (2021) · Elsevier eBooks · doi:10.1016/b978-0-12-822003-0.00005-x
Anand, P. (2021) · Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature · doi:10.3410/f.736651236.793581802
Lipid antigens in adipose tissue
van Eijkeren, R. J. (2022) · doi:10.33540/1201
Mitogenic and Metabolic signals regulate mTOR complex 1 function to control GSK3β nuclear program
Bautista, S. J. (2021) · doi:10.32920/ryerson.14654061.v1 · Cited by 1
Rehling, P., & Callegari, S. (2017) · Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature · doi:10.3410/f.727874366.793538463
Faculty Opinions recommendation of Signaling networks in immunometabolism.
Kane, L. (2020) · Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature · doi:10.3410/f.737610223.793578145
Genome-wide analysis of dendritic cell differentiationPreprint
Tiniakou, I., Hsu, P.-F., López-Zepeda, L. S., Lau, C. M., Soni, C., Esteva, E., Adams, N. M., Liu, F., Khodadadi‐Jamayran, A., Rodrick, T. C., et al. (2022) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2022.05.11.491577
Stress granules and Sec bodies: From Drosophila to mammalian cells.
van Leeuwen, W. (2022) · Utrecht University Repository (Utrecht University) · doi:10.33540/1234
mTORC1: Upstream and Downstream
Yao, Y., & Inoki, K. (2022) · Elsevier eBooks · doi:10.1016/b978-0-12-821618-7.00182-6
Disrupted cellular quality control mechanisms in aging
Carvalho, C., Pires, J. F., Moreira, P. I., & Raimundo, N. (2022) · Elsevier eBooks · doi:10.1016/b978-0-12-823761-8.00016-1
Wicks, I. P., Kim, M. L., Souza, D. P. D., Narayana, V. K., Nguyen, N. C., & Sleebs, B. E. (2022) · Research Square · doi:10.21203/rs.3.rs-2299218/v1
The Lysosome Signaling Platform: Adapting With the Times
Inpanathan, S., & Botelho, R. (2023) · doi:10.32920/21982901.v1
Adaptations of autophagy and lysosomal systems upon membrane damage and pathogenic invasion
Bhattacharya, A. (2023) · Publication Server of Goethe University Frankfurt am Main (Goethe University Frankfurt) · doi:10.21248/gups.73735
Bone, B., Griffith, L., Jefferson, M. A., Yamauchi, Y., Wileman, T. E., & Powell, P. P. (2024) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2024.12.09.627529
Xu, A. E., & Weissman, J. S. (2024) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2024.12.23.630120
Illuminating cholesterol-mTORC1 signaling: LYCHOS in focus
Shin, H. R., & Zoncu, R. (2025) · Structure · doi:10.1016/j.str.2025.01.009
Metadata
- Authors
- Castellano, B. M., Thelen, A. M., Moldavski, O., Feltes, M., van der Welle, R. E. N., Mydock-McGrane, L., Jiang, X., van Eijkeren, R. J., Davis, O. B., Louie, S. M., Perera, R. M., Covey, D. F., Nomura, D. K., Ory, D. S., & Zoncu, R.
- Affiliations
- University of California, Berkeley (US)
- Washington University in St. Louis (US)
- Department of Molecular and Cell Biology, University of California at Berkeley, Berkeley, CA 94720, USA.
- University of California, San Francisco (US)
- Corresponding author
- Castellano, Brian M.
- Thelen, Ashley M.
- Zoncu, Roberto
- ORCID
- Venue
- Science
- Published
- 2017-03-24
- Volume
- 355
- Issue
- 6331
- Pages
- 1306-1311
- ISSN
- 0036-8075 (ISSN-L)
- 1095-9203
- PMC
- PMC5823611
- OpenAlex
- W2603916465
- Semantic Scholar
- 0cc6e6385fc09089703fcae595ecd7b42ea20c97
- Cited by
- 562
- References
- 36
- Citations by year
- 2026: 40 · 2025: 65 · 2024: 57 · 2023: 77 · 2022: 70 · 2021: 63 · 2020: 69 · 2019: 58 · 2018: 41 · 2017: 22
- FWCI
- 21.33
- Type
- journal article
- Language
- en
- Open access
- green
- www.ncbi.nlm.nih.gov
- Locations
- Science (publishedVersion)
- PubMed (publishedVersion)
- PubMed Central (acceptedVersion)
- eScholarship (California Digital Library) (submittedVersion)
- Funders
- NIH (1DP2CA195761-01)
- Pew-Stewart Scholarship for Cancer Research
- Damon Runyon-Rachleff Innovation Award
- Edward Mallinckrodt, Jr. Foundation
- National Institutes of Health (R01 HL067773)
- Taylor Family Institute for Innovative Psychiatric Research
- National Science Foundation (DGE 1106400)
- Howard Hughes Medical Institute Gilliam Fellow
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › PI3K/AKT/mTOR signaling in cancer
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Cell Biology › Autophagy in Disease and Therapy
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Physiology › Calcium signaling and nucleotide metabolism
- Keywords
- mTORC1, lysosomal cholesterol, SLC38A9, Niemann-Pick C1, lysosomes, sterol transport, nutrient signaling, growth regulation, arginine sensing, protein complexes
- MeSH terms
- Mechanistic Target of Rapamycin Complex 1, Animals, Biological Transport, Carrier Proteins, Cholesterol, Cricetulus, Enzyme Activation, Fibroblasts, Humans, Cholesterol, HDL, Lysosomes, Mutation, Nuclear Proteins, Signal Transduction, CHO Cells, Amino Acid Motifs, Amino Acid Transport Systems, Multiprotein Complexes, Mice, HEK293 Cells, TOR Serine-Threonine Kinases
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