Suppression of Clostridium difficile in the Gastrointestinal Tracts of Germfree Mice Inoculated with a Murine Isolate from the Family Lachnospiraceae

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

Schloss, P. D., Westcott, S. L., Ryabin, T., Hall, J. R., Hartmann, M., Hollister, E. B., Lesniewski, R. A., Oakley, B. B., Parks, D. H., Robinson, C. J., et al. (2009) · Applied and Environmental Microbiology · doi:10.1128/aem.01541-09 · Cited by 19,549

Molecular-phylogenetic characterization of microbial community imbalances in human inflammatory bowel diseases

Frank, D. N., St. Amand, A. L., Feldman, R. A., Boedeker, E. C., Harpaz, N., & Pace, N. R. (2007) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0706625104 · Cited by 4,611

Colonic Health: Fermentation and Short Chain Fatty Acids

Wong, J. M. W., de Souza, R., Kendall, C. W. C., Emam, A., & Jenkins, D. J. A. (2006) · Journal of Clinical Gastroenterology · doi:10.1097/00004836-200603000-00015 · Cited by 2,739

Reduced diversity of faecal microbiota in Crohn’s disease revealed by a metagenomic approach

Manichanh, C., Rigottier-Gois, L., Bonnaud, E., Gloux, K., Pelletier, E., Frangeul, L., Nalin, R., Jarrin, C., Chardon, P., Marteau, P., et al. (2006) · Gut · doi:10.1136/gut.2005.073817 · Cited by 2,277

Diversity, metabolism and microbial ecology of butyrate-producing bacteria from the human large intestine

Louis, P., & Flint, H. J. (2009) · FEMS Microbiology Letters · doi:10.1111/j.1574-6968.2009.01514.x · Cited by 2,179

The Phylogeny of the Genus Clostridium: Proposal of Five New Genera and Eleven New Species Combinations

Collins, M. D., Lawson, P. A., Willems, A., Córdoba, J. J., Fernández‐Garayzábal, J. F., GARCIA, P., Cai, J., Hippe, H., & Farrow, J. A. E. (1994) · International Journal of Systematic Bacteriology · doi:10.1099/00207713-44-4-812 · Cited by 1,690

The microbiology of butyrate formation in the human colon

Pryde, S. E., Duncan, S. H., Hold, G. L., Stewart, C. S., & Flint, H. J. (2002) · FEMS Microbiology Letters · doi:10.1111/j.1574-6968.2002.tb11467.x · Cited by 1,320

Phylogenetic Relationships of Butyrate-Producing Bacteria from the Human Gut

Barcenilla, A., Pryde, S. E., Martin, J. C., Duncan, S. H., Stewart, C. S., Henderson, C., & Flint, H. J. (2000) · Applied and Environmental Microbiology · doi:10.1128/aem.66.4.1654-1661.2000 · Cited by 996

Colonization resistance of the digestive tract in conventional and antibiotic-treated mice

van der Waaij, D., Vries, J. M. B.-D., & der Wees, J. E. C. L.-V. (1971) · Journal of Hygiene · doi:10.1017/s0022172400021653 · Cited by 907

INTESTINAL FLORA IN NEW-BORN INFANTS

Hall, I. C. (1935) · American journal of diseases of children · doi:10.1001/archpedi.1935.01970020105010 · Cited by 766

Control of pathogens and pathobionts by the gut microbiota

Kamada, N., Chen, G. Y., Inohara, N., & Núñez, G. (2013) · Nature Immunology · doi:10.1038/ni.2608 · Cited by 1,625

Microbiota-mediated colonization resistance against intestinal pathogens

Buffie, C. G., & Pamer, E. G. (2013) · Nature reviews. Immunology · doi:10.1038/nri3535 · Cited by 1,564

Meta-analysis of gut microbiome studies identifies disease-specific and shared responses

(2017) · doi:10.1038/s41467-017-01973-8 · Cited by 986

Antibiotic-Induced Changes in the Intestinal Microbiota and Disease

Becattini, S., Taur, Y., & Pamer, E. G. (2016) · Trends in Molecular Medicine · doi:10.1016/j.molmed.2016.04.003 · Cited by 901

The effects of intestinal tract bacterial diversity on mortality following allogeneic hematopoietic stem cell transplantation

Taur, Y., Jenq, R. R., Perales, M.-A., Littmann, E. R., Morjaria, S., Ling, L., No, D., Gobourne, A., Viale, A., Dahi, P. B., et al. (2014) · Blood · doi:10.1182/blood-2014-02-554725 · Cited by 885

The intestinal microbiota: Antibiotics, colonization resistance, and enteric pathogens

Kim, S., Covington, A., & Pamer, E. G. (2017) · Immunological Reviews · doi:10.1111/imr.12563 · Cited by 741

Update on Fecal Microbiota Transplantation 2015: Indications, Methodologies, Mechanisms, and Outlook

Kelly, C. R., Kahn, S., Kashyap, P., Laine, L., Rubin, D., Atreja, A., Moore, T., & Wu, G. (2015) · Gastroenterology · doi:10.1053/j.gastro.2015.05.008 · Cited by 572

Multi-omics analyses of radiation survivors identify radioprotective microbes and metabolites

Guo, H., Chou, W.-C., Lai, Y., Liang, K., Tam, J. W., Brickey, W. J., Chen, L., Montgomery, N. D., Li, X., Bohannon, L. M., et al. (2020) · Science · doi:10.1126/science.aay9097 · Cited by 561

Clostridium difficile colitis: pathogenesis and host defence

Abt, M. C., McKenney, P. T., & Pamer, E. G. (2016) · Nature Reviews Microbiology · doi:10.1038/nrmicro.2016.108 · Cited by 575

Intestinal dysbiosis and depletion of butyrogenic bacteria in Clostridium difficile infection and nosocomial diarrhea.

Antharam, V. C., Li, E. C., Ishmael, A., Sharma, A., Mai, V., Rand, K. H., & Wang, G. P. (2013) · Journal of Clinical Microbiology · doi:10.1128/jcm.00845-13 · Cited by 485

Dysbiosis of gut microbiota and microbial metabolites in Parkinson's disease

Sun, M.-F., & Shen, Y.-Q. (2018) · Ageing Research Reviews · doi:10.1016/j.arr.2018.04.004 · Cited by 445

Role of the Intestinal Microbiota in Resistance to Colonization by Clostridium difficile

Britton, R. A., & Young, V. B. (2014) · Gastroenterology · doi:10.1053/j.gastro.2014.01.059 · Cited by 446

Resurrecting the intestinal microbiota to combat antibiotic-resistant pathogens

Pamer, E. G. (2016) · Science · doi:10.1126/science.aad9382 · Cited by 443

Precision Nutrition and the Microbiome, Part I: Current State of the Science

Mills, S., Stanton, C., Lane, J. A., Smith, G., & Ross, R. P. (2019) · Nutrients · doi:10.3390/nu11040923 · Cited by 426

Manipulation of the Quorum Sensing Signal AI-2 Affects the Antibiotic-Treated Gut Microbiota

Thompson, J. A., Oliveira, R. A., Djuković, A., Úbeda, C., & Xavier, K. B. (2015) · Cell Reports · doi:10.1016/j.celrep.2015.02.049 · Cited by 396

Reconstitution of the gut microbiota of antibiotic-treated patients by autologous fecal microbiota transplant

Taur, Y., Coyte, K. Z., Schlüter, J., Robilotti, E. V., Figueroa, C. J., Gjonbalaj, M., Littmann, E. R., Ling, L., Miller, L., Gyaltshen, Y., et al. (2018) · Science Translational Medicine · doi:10.1126/scitranslmed.aap9489 · Cited by 370

Stomach microbiota composition varies between patients with non-atrophic gastritis and patients with intestinal type of gastric cancer

Avilés‐Jiménez, F., Vázquez‐Jiménez, F. E., Guzman, R. M., Mantilla, A., & Torres, J. (2014) · Scientific Reports · doi:10.1038/srep04202 · Cited by 340

Recovery of the Gut Microbiome following Fecal Microbiota Transplantation

Seekatz, A. M., Aas, J., Gessert, C. E., Rubin, T. A., Saman, D. M., Bakken, J., & Young, V. B. (2014) · mBio · doi:10.1128/mbio.00893-14 · Cited by 330

Understanding Clostridium difficile Colonization

Crobach, M. J. T., Vernon, J. J., Loo, V. G., Kong, L. Y., Péchiné, S., Wilcox, M. H., & Kuijper, E. J. (2018) · Clinical Microbiology Reviews · doi:10.1128/cmr.00021-17 · Cited by 329

Rational design of a microbial consortium of mucosal sugar utilizers reduces Clostridiodes difficile colonization

Pereira, F. C., Wasmund, K., Spreitzer, I., Jehmlich, N., Herbold, C. W., Lee, K. S., Szirányi, B., Vesely, C., Decker, T., Stocker, R., et al. (2020) · Nature Communications · doi:10.1038/s41467-020-18928-1 · Cited by 322

NLRP12 attenuates colon inflammation by maintaining colonic microbial diversity and promoting protective commensal bacterial growth

Chen, L., Wilson, J. E., Koenigsknecht, M. J., Chou, W.-C., Montgomery, S. A., Truax, A. D., Brickey, W. J., Packey, C. D., Maharshak, N., Matsushima, G. K., et al. (2017) · Nature Immunology · doi:10.1038/ni.3690 · Cited by 310

Cooperating Commensals Restore Colonization Resistance to Vancomycin-Resistant Enterococcus faecium

Caballero, S., Kim, S., Carter, R. A., Leiner, I. M., Sušac, B., Miller, L., Kim, G. J., Ling, L., & Pamer, E. G. (2017) · Cell Host & Microbe · doi:10.1016/j.chom.2017.04.002 · Cited by 308

Interactions Between the Gastrointestinal Microbiome and Clostridium difficile

Theriot, C. M., & Young, V. B. (2015) · Annual Review of Microbiology · doi:10.1146/annurev-micro-091014-104115 · Cited by 320

Resveratrol-induced gut microbiota reduces obesity in high-fat diet-fed mice

Wang, P., Li, D., Ke, W., Liang, D., Hu, X., & Chen, F. (2020) · International Journal of Obesity · doi:10.1038/s41366-019-0332-1 · Cited by 301

Mechanism of the Gut Microbiota Colonization Resistance and Enteric Pathogen Infection

Khan, I., Bai, Y., Zha, L., Ullah, N., Ullah, H., Shah, S. R. H., Sun, H., & Zhang, C. (2021) · Frontiers in Cellular and Infection Microbiology · doi:10.3389/fcimb.2021.716299 · Cited by 291

Antibiotic-Induced Alterations of the Murine Gut Microbiota and Subsequent Effects on Colonization Resistance against Clostridium difficile

Schubert, A. M., Sinani, H., & Schloss, P. D. (2015) · mBio · doi:10.1128/mbio.00974-15 · Cited by 269

Ecological robustness of the gut microbiota in response to ingestion of transient food-borne microbes

Zhang, C., Derrien, M., Levenez, F., Brazeilles, R., Ballal, S. A., Kim, J., Degivry, M.-C., Quéré, G., Garault, P., van Hylckama Vlieg, J. E. T., et al. (2016) · The ISME Journal · doi:10.1038/ismej.2016.13 · Cited by 264

Clostridium difficile and the microbiota

Seekatz, A. M., & Young, V. B. (2014) · Journal of Clinical Investigation · doi:10.1172/jci72336 · Cited by 255

Chronic Trichuris muris Infection Decreases Diversity of the Intestinal Microbiota and Concomitantly Increases the Abundance of Lactobacilli

Holm, J. B., Sorobetea, D., Kiilerich, P., Ramayo‐Caldas, Y., Estellé, J., Ma, T., Madsen, L., Kristiansen, K., & Svensson, M. (2015) · PLoS ONE · doi:10.1371/journal.pone.0125495 · Cited by 254

Microbiome Dependent Regulation of Tregs and Th17 Cells in Mucosa

Pandiyan, P., Bhaskaran, N., Zou, M., Schneider, E., Jayaraman, S., & Huehn, J. (2019) · Frontiers in Immunology · doi:10.3389/fimmu.2019.00426 · Cited by 237

Characterization and comparison of the bacterial microbiota in different gastrointestinal tract compartments in horses

Costa, M., Silva, G., Ramos, R. V., Staempfli, H. R., Arroyo, L. G., Kim, P., & Weese, J. S. (2015) · The Veterinary Journal · doi:10.1016/j.tvjl.2015.03.018 · Cited by 239

Strict vegetarian diet improves the risk factors associated with metabolic diseases by modulating gut microbiota and reducing intestinal inflammation

Kim, M., Hwang, S., Park, E., & Bae, J. (2013) · Environmental Microbiology Reports · doi:10.1111/1758-2229.12079 · Cited by 220

Commensal bacteria mediated defenses against pathogens

Abt, M. C., & Pamer, E. G. (2014) · Current Opinion in Immunology · doi:10.1016/j.coi.2014.03.003 · Cited by 223

Characterization of the 17 strains of regulatory T cell-inducing human-derived Clostridia

Narushima, S., Sugiura, Y., Oshima, K., Atarashi, K., Hattori, M., Suematsu, M., & Honda, K. (2014) · Gut Microbes · doi:10.4161/gmic.28572 · Cited by 210

Enlightening the taxonomy darkness of human gut microbiomes with a cultured biobank

Liu, C., Du, M., Abuduaini, R., Yu, H., Li, D., Wang, Y., Zhou, N., Jiang, M.-Z., Niu, P.-X., Han, S.-S., et al. (2021) · Microbiome · doi:10.1186/s40168-021-01064-3 · Cited by 210

Metabolite profiling of human‐originated Lachnospiraceae at the strain level

Abdugheni, R., Wang, W.-Z., Wang, Y., Du, M., Liu, F.-L., Zhou, N., Jiang, C., Wang, C., Wu, L., Ma, J., et al. (2022) · iMeta · doi:10.1002/imt2.58 · Cited by 206

Fecal Transplants: What Is Being Transferred?

Bojanova, D. P., & Bordenstein, S. R. (2016) · PLoS Biology · doi:10.1371/journal.pbio.1002503 · Cited by 191

The modulatory effect of infusions of green tea, oolong tea, and black tea on gut microbiota in high-fat-induced obese mice

Liu, Z., Chen, Z., Guo, H., He, D., Zhao, H., Wang, Z., Zhang, W., Liao, L., Zhang, C., & Ni, L. (2016) · Food & Function · doi:10.1039/c6fo01439a · Cited by 185

The Synergistic Effects of Polysaccharides and Ginsenosides From American Ginseng (Panax quinquefolius L.) Ameliorating Cyclophosphamide-Induced Intestinal Immune Disorders and Gut Barrier Dysfunctions Based on Microbiome-Metabolomics Analysis

Zhou, R., He, D., Xie, J., Zhou, Q., Zeng, H., Li, H., & Huang, L. (2021) · Frontiers in Immunology · doi:10.3389/fimmu.2021.665901 · Cited by 191

Changes in the faecal microbiota of mares precede the development of post partum colic

Weese, J. S., Holcombe, S. J., Embertson, R. M., Kurtz, K. A., Roessner, H. A., Jalali, M., & Wismer, S. E. (2014) · Equine Veterinary Journal · doi:10.1111/evj.12361 · Cited by 186

Randomised clinical trial: faecal microbiota transplantation for recurrent Clostridum difficile infection – fresh, or frozen, or lyophilised microbiota from a small pool of healthy donors delivered by colonoscopy

Jiang, Z., Ajami, N. J., Petrosino, J. F., Jun, G., Hanis, C. L., Shah, M. S., Hochman, L. G., Ankoma‐Sey, V., DuPont, A. W., Wong, M. C., et al. (2017) · Alimentary Pharmacology & Therapeutics · doi:10.1111/apt.13969 · Cited by 188

From Hype to Hope: The Gut Microbiota in Enteric Infectious Disease

McKenney, P. T., & Pamer, E. G. (2015) · Cell · doi:10.1016/j.cell.2015.11.032 · Cited by 185

Clostridium difficile – From Colonization to Infection

Schäffler, H., & Breitrück, A. (2018) · Frontiers in Microbiology · doi:10.3389/fmicb.2018.00646 · Cited by 174

Human milk oligosaccharides shorten rotavirus-induced diarrhea and modulate piglet mucosal immunity and colonic microbiota

Li, M., Monaco, M. H., Wang, M., Comstock, S. S., Kuhlenschmidt, T. B., Fahey, G. C., Jr., Miller, M. J., Kuhlenschmidt, M. S., & Donovan, S. M. (2014) · The ISME Journal · doi:10.1038/ismej.2014.10 · Cited by 178

Murine colitis reveals a disease-associated bacteriophage community

Duerkop, B. A., Kleiner, M., Páez-Espino, D., Zhu, W., Bushnell, B., Hassell, B., Winter, S., Kyrpides, N. C., & Hooper, L. V. (2018) · Nature Microbiology · doi:10.1038/s41564-018-0210-y · Cited by 173

Dynamics and Establishment of Clostridium difficile Infection in the Murine Gastrointestinal Tract

Koenigsknecht, M. J., Theriot, C. M., Bergin, I. L., Schumacher, C. A., Schloss, P. D., & Young, V. B. (2014) · Infection and Immunity · doi:10.1128/iai.02768-14 · Cited by 176

Microbiota Dynamics in Patients Treated with Fecal Microbiota Transplantation for Recurrent Clostridium difficile Infection

Song, Y., Garg, S., Girotra, M., Maddox, C., von Rosenvinge, E. C., Dutta, A., Dutta, S., & Fricke, W. F. (2013) · PLoS ONE · doi:10.1371/journal.pone.0081330 · Cited by 172

The Effect of Trans Fatty Acids on Human Health: Regulation and Consumption Patterns

Pipoyan, D., Stepanyan, S., Stepanyan, S., Beglaryan, M., Costantini, L., Molinari, R., & Merendino, N. (2021) · Foods · doi:10.3390/foods10102452 · Cited by 179

Dissecting the interplay between intestinal microbiota and host immunity in health and disease: Lessons learned from germfree and gnotobiotic animal models

Fiebiger, U., Bereswill, S., & Heimesaat, M. M. (2016) · European Journal of Microbiology and Immunology · doi:10.1556/1886.2016.00036 · Cited by 165

Resistant starch diet induces change in the swine microbiome and a predominance of beneficial bacterial populations

Umu, Ö. C. O., Frank, J. A., Fangel, J. U., Oostindjer, M., da Silva, C. S., Bolhuis, J. E., Bosch, G., Willats, W. G. T., Pope, P. B., & Diep, D. B. (2015) · Microbiome · doi:10.1186/s40168-015-0078-5 · Cited by 158

Impact of microbial derived secondary bile acids on colonization resistance against Clostridium difficile in the gastrointestinal tract

Winston, J. A., & Theriot, C. M. (2016) · Anaerobe · doi:10.1016/j.anaerobe.2016.05.003 · Cited by 155

Socioeconomic Status and the Gut Microbiome: A TwinsUK Cohort Study

Bowyer, R. C. E., Jackson, M. A., Le Roy, C. I., Ni Lochlainn, M., Spector, T. D., Dowd, J. B., & Steves, C. J. (2019) · Microorganisms · doi:10.3390/microorganisms7010017 · Cited by 150

Diet Complexity and Estrogen Receptor β Status Affect the Composition of the Murine Intestinal Microbiota

Menon, R., Watson, S. E., Thomas, L. N., Allred, C. D., Dabney, A. R., Azcárate-Peril, M. A., & Sturino, J. M. (2013) · Applied and Environmental Microbiology · doi:10.1128/aem.01182-13 · Cited by 149

Dietary encapsulated essential oils and organic acids mixture improves gut health in broiler chickens challenged with necrotic enteritis

Phạm, V. H., Kan, L., Huang, J., Geng, Y., Zhen, W., Guo, Y., Abbas, W., & Wang, Z. (2020) · Journal of Animal Science and Biotechnology/Journal of animal science and biotechnology · doi:10.1186/s40104-019-0421-y · Cited by 151

The intestinal microbiota and susceptibility to infection in immunocompromised patients

Taur, Y., & Pamer, E. G. (2013) · Current Opinion in Infectious Diseases · doi:10.1097/qco.0b013e3283630dd3 · Cited by 144

Para-cresol production by Clostridium difficile affects microbial diversity and membrane integrity of Gram-negative bacteria

Passmore, I. J., Letertre, M. P. M., Preston, M. D., Bianconi, I., Harrison, M. A., Nasher, F., Kaur, H., Hong, H. A., Baines, S. D., Cutting, S. M., et al. (2018) · PLoS Pathogens · doi:10.1371/journal.ppat.1007191 · Cited by 141

Modulation of post-antibiotic bacterial community reassembly and host response by Candida albicans

Erb Downward, J. R., Falkowski, N. R., Mason, K. L., Muraglia, R., & Huffnagle, G. B. (2013) · Scientific Reports · doi:10.1038/srep02191 · Cited by 136

Inference of Network Dynamics and Metabolic Interactions in the Gut Microbiome

Steinway, S. N., Biggs, M. B., Loughran, T. P., Papin, J. A., & Albert, R. (2015) · PLoS Computational Biology · doi:10.1371/journal.pcbi.1004338 · Cited by 130

Lachnospiraceae are emerging industrial biocatalysts and biotherapeutics

Zaplana, T., Miele, S., & Tolonen, A. C. (2024) · Frontiers in Bioengineering and Biotechnology · doi:10.3389/fbioe.2023.1324396 · Cited by 145

Commensal Gram-positive bacteria initiates colitis by inducing monocyte/macrophage mobilization

Nakanishi, Y., Sato, T., & Ohteki, T. (2014) · Mucosal Immunology · doi:10.1038/mi.2014.53 · Cited by 122

In vivo commensal control of Clostridioides difficile virulence

Girinathan, B. P., DiBenedetto, N., Worley, J. N., Peltier, J., Arrieta-Ortiz, M. L., Immanuel, S. R. C., Lavin, R., Delaney, M. L., Cummins, C. K., Hoffman, M., et al. (2021) · Cell Host & Microbe · doi:10.1016/j.chom.2021.09.007 · Cited by 114

Emerging insights on intestinal dysbiosis during bacterial infections

Pham, T. A. N., & Lawley, T. D. (2014) · Current Opinion in Microbiology · doi:10.1016/j.mib.2013.12.002 · Cited by 122

Fecal microbiota transplantation: effectiveness, complexities, and lingering concerns

Pamer, E. G. (2014) · Mucosal Immunology · doi:10.1038/mi.2013.117 · Cited by 113

Sewage reflects the distribution of human faecal L achnospiraceae

McLellan, S. L., Newton, R. J., VandeWalle, J. L., Shanks, O. C., Huse, S. M., Eren, A. M., & Sogin, M. L. (2013) · Environmental Microbiology · doi:10.1111/1462-2920.12092 · Cited by 113

Shifts in the Gut Metabolome and Clostridium difficile Transcriptome throughout Colonization and Infection in a Mouse Model

Fletcher, J. R., Erwin, S., Lanzas, C., & Theriot, C. M. (2018) · mSphere · doi:10.1128/msphere.00089-18 · Cited by 104

Learning from bacterial competition in the host to develop antimicrobials

Raffatellu, M. (2018) · Nature Medicine · doi:10.1038/s41591-018-0145-0 · Cited by 113

Development of the faecal microbiota in foals

Costa, M., Stämpfli, H. R., Allen‐Vercoe, E., & Weese, J. S. (2015) · Equine Veterinary Journal · doi:10.1111/evj.12532 · Cited by 117

Structural and functional changes in the gut microbiota associated to Clostridium difficile infection

Pérez‐Cobas, A. E., Artacho, A., Ott, S. J., Moyá, A., Gosalbes, M. J., & Latorre, A. (2014) · Frontiers in Microbiology · doi:10.3389/fmicb.2014.00335 · Cited by 109

Rapid transcriptional and metabolic adaptation of intestinal microbes to host immune activation

Becattini, S., Sorbara, M. T., Kim, S. G., Littmann, E. R., Dong, Q., Walsh, G., Wright, R. J., Amoretti, L. A., Fontana, E., Hohl, T. M., et al. (2021) · Cell Host & Microbe · doi:10.1016/j.chom.2021.01.003 · Cited by 106

Peripheral education of the immune system by the colonic microbiota

Kuhn, K. A., & Stappenbeck, T. S. (2013) · Seminars in Immunology · doi:10.1016/j.smim.2013.10.002 · Cited by 108

Commensal Koch's postulates: establishing causation in human microbiota research

Neville, B. A., Forster, S. C., & Lawley, T. D. (2017) · Current Opinion in Microbiology · doi:10.1016/j.mib.2017.10.001 · Cited by 107

Dietary trans -10, cis -12-conjugated linoleic acid alters fatty acid metabolism and microbiota composition in mice

Marques, T. M., Wall, R., O’Sullivan, Ó., Fitzgerald, G. F., Shanahan, F., Quigley, E. M. M., Cotter, P. D., Cryan, J. F., Dinan, T. G., Ross, R. P., et al. (2015) · British Journal Of Nutrition · doi:10.1017/s0007114514004206 · Cited by 103

Mechanistic Insights in the Success of Fecal Microbiota Transplants for the Treatment of Clostridium difficile Infections

Baktash, A., Terveer, E. M., Zwittink, R. D., Hornung, B., Corver, J., Kuijper, E. J., & Smits, W. K. (2018) · Frontiers in Microbiology · doi:10.3389/fmicb.2018.01242 · Cited by 112

Colonization resistance and microbial ecophysiology: using gnotobiotic mouse models and single-cell technology to explore the intestinal jungle

Stecher, B., Berry, D., & Loy, A. (2013) · FEMS Microbiology Reviews · doi:10.1111/1574-6976.12024 · Cited by 106

Altered Egos: Antibiotic Effects on Food Animal Microbiomes

Allen, H. K., & Stanton, T. B. (2014) · Annual Review of Microbiology · doi:10.1146/annurev-micro-091213-113052 · Cited by 107

Clostridium difficile Alters the Structure and Metabolism of Distinct Cecal Microbiomes during Initial Infection To Promote Sustained Colonization

Jenior, M. L., Leslie, J. L., Young, V. B., & Schloss, P. D. (2018) · mSphere · doi:10.1128/msphere.00261-18 · Cited by 96

Mechanisms of Microbe–Host Interaction in Crohn’s Disease: Dysbiosis vs. Pathobiont Selection

Buttó, L. F., Schaubeck, M., & Haller, D. (2015) · Frontiers in Immunology · doi:10.3389/fimmu.2015.00555 · Cited by 97

Metabolomics Analysis Identifies Intestinal Microbiota-Derived Biomarkers of Colonization Resistance in Clindamycin-Treated Mice

Jump, R., Polinkovsky, A., Hurless, K. N., Sitzlar, B. M., Eckart, K. E., Tomas, M. E., Deshpande, A., Nerandzic, M. M., & Donskey, C. J. (2014) · PLoS ONE · doi:10.1371/journal.pone.0101267 · Cited by 92

Microbiome mediation of infections in the cancer setting

Taur, Y., & Pamer, E. G. (2016) · Genome Medicine · doi:10.1186/s13073-016-0306-z · Cited by 89

A High-Fat/High-Protein, Atkins-Type Diet Exacerbates Clostridioides ( Clostridium ) difficile Infection in Mice, whereas a High-Carbohydrate Diet Protects

Mefferd, C. C., Bhute, S. S., Phan, J. R., Villarama, J. V., Do, D. M., Alarcia, S., Abel‐Santos, E., & Hedlund, B. P. (2020) · mSystems · doi:10.1128/msystems.00765-19 · Cited by 87

Pre-colonization with the commensal fungusCandida albicansreduces murine susceptibility toClostridium difficileinfection

Markey, L., Shaban, L., Green, E. R., Lemon, K. P., Mecsas, J. C., & Kumamoto, C. A. (2018) · Gut Microbes · doi:10.1080/19490976.2018.1465158 · Cited by 91

Enlisting commensal microbes to resist antibiotic-resistant pathogens

Keith, J. W., & Pamer, E. G. (2018) · The Journal of Experimental Medicine · doi:10.1084/jem.20180399 · Cited by 93

Protective Factors in the Intestinal Microbiome Against Clostridium difficile Infection in Recipients of Allogeneic Hematopoietic Stem Cell Transplantation

Lee, Y. J., Argüello, E., Jenq, R. R., Littmann, E. R., Kim, G. J., Miller, L., Ling, L., Figueroa, C. J., Robilotti, E. V., Perales, M., et al. (2017) · The Journal of Infectious Diseases · doi:10.1093/infdis/jix011 · Cited by 84

Colonization Resistance of the Gut Microbiota against Clostridium difficile

Pérez‐Cobas, A. E., Moyá, A., Gosalbes, M. J., & Latorre, A. (2015) · Antibiotics · doi:10.3390/antibiotics4030337 · Cited by 85

Microbial dysbiosis associated with impaired intestinal Na+/H+ exchange accelerates and exacerbates colitis in ex-germ free mice

Harrison, C. A., Laubitz, D., Ohland, C., Midura‐Kiela, M. T., Patil, K., Besselsen, D. G., Jamwal, D. R., Jobin, C., Ghishan, F. K., & Kiela, P. R. (2018) · Mucosal Immunology · doi:10.1038/s41385-018-0035-2 · Cited by 81

Small animal models for the study ofClostridium difficiledisease pathogenesis

Hutton, M. L., Mackin, K. E., Chakravorty, A., & Lyras, D. (2013) · FEMS Microbiology Letters · doi:10.1111/1574-6968.12367 · Cited by 81

Preventive Effects and Mechanisms of Garlic on Dyslipidemia and Gut Microbiome Dysbiosis

Chen, K., Xie, K., Liu, Z., Nakasone, Y., Sakao, K., Hossain, M. A., & Hou, D.-X. (2019) · Nutrients · doi:10.3390/nu11061225 · Cited by 79

Microbial and metabolic interactions between the gastrointestinal tract and Clostridium difficile infection

Theriot, C. M., & Young, V. B. (2013) · Gut Microbes · doi:10.4161/gmic.27131 · Cited by 83

Microbiologic factors affecting Clostridium difficile recurrence

Chilton, C. H., Pickering, D. S., & Freeman, J. (2017) · Clinical Microbiology and Infection · doi:10.1016/j.cmi.2017.11.017 · Cited by 81

A comprehensive analysis of the faecal microbiome and metabolome of Strongyloides stercoralis infected volunteers from a non-endemic area

Jenkins, T. P., Formenti, F., Castro, C., Piubelli, C., Perandin, F., Buonfrate, D., Otranto, D., Griffin, J. L., Krause, L., Bisoffi, Z., et al. (2018) · Scientific Reports · doi:10.1038/s41598-018-33937-3 · Cited by 79

Quinoa whole grain diet compromises the changes of gut microbiota and colonic colitis induced by dextran Sulfate sodium in C57BL/6 mice

Liu, W., Zhang, Y., Qiu, B., Fan, S., Ding, H., & Liu, Z. (2018) · Scientific Reports · doi:10.1038/s41598-018-33092-9 · Cited by 77

Microplastics dampen the self-renewal of hematopoietic stem cells by disrupting the gut microbiota-hypoxanthine-Wnt axis

Jiang, L., Ye, Y., Han, Y., Wang, Q., Lu, H., Li, J., Qian, W., Zeng, X. Y., Zhang, Z., Zhao, Y., et al. (2024) · Cell Discovery · doi:10.1038/s41421-024-00665-0 · Cited by 87

Identification of key taxa that favor intestinal colonization of Clostridium difficile in an adult Chinese population

Gu, S., Chen, Y., Zhang, X., Lu, H., Lv, T., Shen, P., Lv, L., Zheng, B., Jiang, X., & Li, L. (2015) · Microbes and Infection · doi:10.1016/j.micinf.2015.09.008 · Cited by 77

Antibiotic-Induced Shifts in Fecal Microbiota Density and Composition during Hematopoietic Stem Cell Transplantation

Morjaria, S. M., Schlüter, J., Taylor, B. P., Littmann, E. R., Carter, R. A., Fontana, E., Peled, J. U., van den Brink, M. R. M., Xavier, J. B., & Taur, Y. (2019) · Infection and Immunity · doi:10.1128/iai.00206-19 · Cited by 76

IL-17–producing γδ T cells protect against Clostridium difficile infection

Chen, Y.-S., Chen, I.-B. D., Pham, G. H., Shao, T., Bangar, H., Way, S. S., & Haslam, D. B. (2020) · Journal of Clinical Investigation · doi:10.1172/jci127242 · Cited by 73

Ovotransferrin ameliorates the dysbiosis of immunomodulatory function and intestinal microbiota induced by cyclophosphamide

Zhu, G., Jiang, Y., Yao, Y., Wu, N., Luo, J., Hu, M., Tu, Y., & Xu, M. (2019) · Food & Function · doi:10.1039/c8fo02312c · Cited by 74

Gut Microbiome, Short-Chain Fatty Acids, and Mucosa Injury in Young Adults with Human Immunodeficiency Virus Infection

Qing, Y., Xie, H., Su, C. H., Wang, Y., Yu, Q., Pang, Q., & Cui, F. (2018) · Digestive Diseases and Sciences · doi:10.1007/s10620-018-5428-2 · Cited by 74

Insights into the Role of Human Gut Microbiota in Clostridioides difficile Infection

Kachrimanidou, M., & Tsintarakis, E. (2020) · Microorganisms · doi:10.3390/microorganisms8020200 · Cited by 75

Muricholic Acids Inhibit Clostridium difficile Spore Germination and Growth

Francis, M. B., Allen, C. A., & Sorg, J. A. (2013) · PLoS ONE · doi:10.1371/journal.pone.0073653 · Cited by 71

Gnotobiotic Rodents: An In Vivo Model for the Study of Microbe–Microbe Interactions

Martín, R., Bermúdez‐Humarán, L. G., & Langella, P. (2016) · Frontiers in Microbiology · doi:10.3389/fmicb.2016.00409 · Cited by 68

The Indigenous Gut Microbiota Mediates Colonization Resistance Against Clostridium difficile.

Reeves, A. E. (2012) · Deep Blue (University of Michigan)

Prevention and Cure of Murine C. difficile Infection by a Lachnospiraceae Strain

Tejada, J. N. (2024) · Digital Archive @ GSU · doi:10.57709/37343126

The Role of the Gut Microbiota in Colonization Resistance against Clostridium difficile.

Schubert, A. M. (2015) · Deep Blue (University of Michigan)

Mice colonized with the defined microbial community OMM19.1 are susceptible to Clostridioides difficile infection without prior antibiotic treatment

Chua, M. J., & Collins, J. (2024) · mSphere · doi:10.1128/msphere.00718-24 · Cited by 10

Antibiotic-induced alterations of the murine gut microbiota and subsequent effects on colonization resistance against Clostridium difficile. mBio 6:e00974–15 DOI

Schubert, R. M., Sinani, H., & Schloss, P. D. (2015)