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From Graphs to Spatial Graphs
Abstract
Graph theory is a powerful body of mathematical knowledge, based on simple concepts, in which structural units are depicted as nodes with relationships between them depicted as lines. The nodes may have qualitative and quantitative characteristics, and the edges may have properties such as weights and directions. Graph theory provides a flexible conceptual model that can clarify the relationship between structures and processes, including the mechanisms of configuration effects and compositional differences. Graph concepts apply to many ecological and evolutionary phenomena, including interspecific associations, spatial structure, dispersal in landscapes, and relationships within metapopulations and metacommunities. We review applications of graph theory in biology, emphasizing graphs with spatial contexts. We show how spatial graph properties can be used for description and comparison as well as to test specific hypotheses. We suggest that future applications should include explicit spatial elements for landscape studies of ecological, genetic and epidemiological phenomena.
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“Network-based representations can be analyzed to derive meaningful connectivity statistics [22]–[25], though these are often dependent on an assumed graph-theoretic model (e.g., complete graph, minimum planar graph) [19] and are often computer resource-limited as larger areas are considered [26].”
From Applying circuit theory for corridor expansion and management at regional scales: tiling, pinch points, and omnidirectional connectivity (2014) · cites this paper as [19]
Citations
Cites
Social Network Analysis: Methods and Applications
Wasserman, S., & Faust, K. (1994) · doi:10.1017/cbo9780511815478 · Cited by 17,557
Modularity and community structure in networks
Newman, M. E. J. (2006) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0601602103 · Cited by 12,256
Network biology: understanding the cell's functional organization
Barabási, A.-L., & Oltvai, Z. N. (2004) · Nature Reviews Genetics · doi:10.1038/nrg1272 · Cited by 7,903
USING CIRCUIT THEORY TO MODEL CONNECTIVITY IN ECOLOGY, EVOLUTION, AND CONSERVATION
McRae, B. H., Dickson, B. G., Keitt, T. H., & Shah, V. B. (2008) · Ecology · doi:10.1890/07-1861.1 · Cited by 2,244
Hierarchical structure and the prediction of missing links in networks
Clauset, A., Moore, C., & Newman, M. E. J. (2008) · Nature · doi:10.1038/nature06830 · Cited by 2,171
Systematic interpretation of genetic interactions using protein networks
Kelley, R., & Ideker, T. (2005) · Nature Biotechnology · doi:10.1038/nbt1096 · Cited by 437
Motifs, modules and games in bacteria
Wolf, D. M., & Arkin, A. P. (2003) · Current Opinion in Microbiology · doi:10.1016/s1369-5274(03)00033-x · Cited by 303
Penny, D., Foulds, L. R., & Hendy, M. D. (1982) · Nature · doi:10.1038/297197a0 · Cited by 213
Research works printed but not linked: 109
- 10.1890/1540-9295(2007)5[145:FKGIPA]2.0.CO;2 · DOI
- 10.1103/RevModPhys.74.47 · DOI · Paper page
- 10.1007/978-1-4471-0467-4 · DOI
- 10.1111/j.1600-0587.2008.05435.x · DOI
- 10.1007/978-1-4471-3886-0 · DOI
- 10.1016/j.baae.2007.06.003 · DOI
- 10.1098/rstb.2008.0226 · DOI
- 10.1016/j.biocon.2008.07.016 · DOI
- 10.1098/rspb.2007.0459 · DOI
- 10.1006/jtbi.1998.0866 · DOI
- 10.1007/s10980-006-9015-0 · DOI
- 10.1890/1051-0761(2006)016[0440:TVOSSL]2.0.CO;2 · DOI
- 10.1890/1051-0761(2001)011[1778:POLDDU]2.0.CO;2 · DOI
- 10.1007/b106453 · DOI
- 10.1890/05-0860 · DOI
- 10.1086/589451 · DOI
- 10.1023/A:1026062530600 · DOI
- 10.1146/annurev.ecolsys.37.091305.110050 · DOI
- 10.1103/PhysRevLett.104.048703 · DOI
- 10.1007/s10980-008-9283-y · DOI
- 10.1146/annurev.ecolsys.38.091206.095507 · DOI
- 10.1515/9781400837762 · DOI
- 10.1017/CBO9780511754821 · DOI
- 10.1007/BF00055211 · DOI
- Dale MRT, 1985, Vegetatio, 63, 79, 10.1007/BF00032608 · DOI
- 10.1046/j.1461-0248.2002.00354.x · DOI
- 10.1016/j.tpb.2006.07.001 · DOI
- 10.1111/j.1755-0998.2008.02384.x · DOI
- 10.1111/j.1365-294X.2004.02177.x · DOI · Paper page
- Economo EP, 2008, Ecol. Lett., 11, 52, 10.1111/j.1461-0248.2007.01126.x · DOI
- Erdös P, 1960, Publ. Math. Inst. Hung. Acad. Sci., 5, 17
- 10.1890/07-1419.1 · DOI
- 10.1890/0012-9658(2002)083[3243:CFAERI]2.0.CO;2 · DOI
- 10.1007/s10021-007-9038-7 · DOI
- 10.1007/s10980-007-9121-7 · DOI
- 10.2307/1939419 · DOI
- 10.1017/CBO9780511542039 · DOI · Paper page
- 10.1111/j.1538-4632.2009.00766.x · DOI
- Fortuna MA, 2008, Unity in Diversity: Reflections on Ecology after the Legacy of Ramon Margalef, 371
- 10.1111/j.1461-0248.2008.01167.x · DOI
- 10.1098/rspb.2005.3448 · DOI
- 10.1890/08-0174.1 · DOI
- 10.2307/3033543 · DOI
- 10.1111/j.1939-7445.2008.00004.x · DOI
- Garroway CJ, 2008, Evol. Appl., 1, 620, 10.1111/j.1752-4571.2008.00047.x · DOI
- 10.1146/annurev.ecolsys.39.110707.173529 · DOI
- 10.1111/j.1461-0248.2006.01007.x · DOI
- Gross JL, 2006, Graph Theory and Its Applications
- Hall BG, 2008, Phylogenetic Trees Made Easy. A How-to Manual
- 10.21236/AD0705364 · DOI
- 10.1098/rspb.1991.0120 · DOI
- Holyoak M, 2005, Metacommunities: Spatial Dynamics and Ecological Communities
- 10.2307/2256928 · DOI
- 10.1093/molbev/msj030 · DOI
- 10.1111/j.1365-2656.2008.01460.x · DOI · Paper page
- 10.1007/PL00011456 · DOI
- 10.1111/j.1461-0248.2009.01341.x · DOI
- 10.1098/rsif.2005.0051 · DOI
- 10.5751/ES-00015-010104 · DOI
- 10.1007/978-0-387-88146-1 · DOI
- Lee SH, 2005, Phys. Rev., 73, 016102
- Legendre P, 1998, Numerical Ecology
- 10.1007/s11005-006-0123-1 · DOI
- 10.1038/nature03204 · DOI
- 10.1049/iet-syb:20060038 · DOI
- 10.1016/j.tree.2006.03.013 · DOI
- 10.1007/BF00347446 · DOI
- 10.1073/pnas.0706568104 · DOI · Paper page
- 10.1016/j.jtbi.2006.12.033 · DOI
- Melián CJ, Bascompte J, Jordano P. 2005. Spatial structure and dynamics in a marine food web. InComplexity in Aquatic Food Webs: An Ecosystem Approach, ed. A Belgrano, U Scharler, J Dunne, RE Ulanowicz, pp.19–24. Oxford: Oxford Univ. Press · DOI
- 10.1090/S0273-0979-06-01148-7 · DOI
- 10.1126/science.298.5594.824 · DOI · Paper page
- Monmonier M., 1973, Geogr. Anal., 3, 245, 10.1111/j.1538-4632.1973.tb01011.x · DOI
- 10.1038/nature04927 · DOI
- 10.1103/PhysRevLett.89.208701 · DOI
- Newman MEJ, 2006, The Structure and Dynamics of Networks
- 10.1016/j.jtbi.2008.07.015 · DOI
- 10.1016/j.biocon.2005.12.014 · DOI
- 10.1111/j.1538-4632.1993.tb00301.x · DOI
- 10.1016/j.jtbi.2007.01.024 · DOI
- 10.1002/9780470317013 · DOI
- 10.1111/j.0016-7363.2005.00674.x · DOI
- Pascual M, 2006, Ecological Networks: Linking Structure to Dynamics in Food Webs
- 10.1007/s10980-006-0013-z · DOI · Paper page
- 10.1890/07-0507.1 · DOI
- 10.1007/s10980-008-9303-y · DOI · Paper page
- 10.1016/j.tree.2005.04.004 · DOI
- 10.1007/s10980-009-9436-7 · DOI · Paper page
- 10.1556/ComEc.1.2000.1.12 · DOI
- 10.1073/pnas.0805571105 · DOI
- 10.1016/j.biocon.2005.09.018 · DOI
- 10.1016/j.envsoft.2008.05.005 · DOI
- 10.1111/j.1365-2664.2007.01383.x · DOI
- 10.1016/j.ecocom.2007.05.002 · DOI
- 10.1016/j.ecocom.2005.04.005 · DOI
- 10.1016/j.tree.2006.05.013 · DOI
- 10.1111/j.1365-294X.2010.04657.x · DOI · Paper page
- 10.1016/j.biosystems.2006.02.008 · DOI
- 10.1098/rspb.2007.0571 · DOI
- 10.1038/35065725 · DOI
- 10.1038/nature05784 · DOI · Paper page
- 10.1017/CBO9780511754821.019 · DOI
- 10.1007/s10980-007-9138-y · DOI
- 10.1890/0012-9658(2001)082[1205:LCAGTP]2.0.CO;2 · DOI
- 10.1111/j.1461-0248.2008.01271.x · DOI · Paper page
- 10.1068/b250849 · DOI
- Wang Y-H, 2008, Landsc. Ecol., 23, 989
- 10.1890/0012-9658(1998)079[2539:AGTATD]2.0.CO;2 · DOI
- West DB, 2001, Introduction to Graph Theory
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Howey, M. C. L. (2011) · Journal of Archaeological Science · doi:10.1016/j.jas.2011.03.024 · Cited by 168
Pelletier, D., Clark, M., Anderson, M. G., Rayfield, B., Wulder, M. A., & Cardille, J. A. (2014) · PLOS One · doi:10.1371/journal.pone.0084135 · Cited by 158
Metadata
- Authors
- Dale, M. R. T., & Fortin, M.-J.
- Venue
- Annual Review of Ecology, Evolution, and Systematics
- Publisher
- Annual Reviews
- Published
- 2010-12-01
- Volume
- 41
- Issue
- 1
- Pages
- 21-38
- ISSN
- 1543-592X
- 1545-2069
- Cited by
- 265
- References
- 8
- Language
- en
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