Oligodendrocyte-specific Argonaute profiling identifies microRNAs associated with experimental autoimmune encephalomyelitis
Abstract
Background: MicroRNAs (miRNAs) belong to a class of evolutionary conserved, non-coding small RNAs with regulatory functions on gene expression. They negatively affect the expression of target genes by promoting either RNA degradation or translational inhibition. In recent years, converging studies have identified miRNAs as key regulators of oligodendrocyte (OL) functions. OLs are the cells responsible for the formation and maintenance of myelin in the central nervous system (CNS) and represent a principal target of the autoimmune injury in multiple sclerosis (MS). Methods: MiRAP is a novel cell-specific miRNA affinity-purification technique which relies on genetically tagging Argonaut 2 (AGO2), an enzyme involved in miRNA processing. Here, we exploited miRAP potentiality to characterize OL-specific miRNA dynamics in the MS model experimental autoimmune encephalomyelitis (EAE). Results: We show that 20 miRNAs are differentially regulated in OLs upon transition from pre-symptomatic EAE stages to disease peak. Subsequent in vitro differentiation experiments demonstrated that a sub-group of them affects the OL maturation process, mediating either protective or detrimental signals. Lastly, transcriptome profiling highlighted the endocytosis, ferroptosis, and FoxO cascades as the pathways associated with miRNAs mediating or inhibiting OL maturation. Conclusions: Altogether, our work supports a dual role for miRNAs in autoimmune demyelination. In particular, the enrichment in miRNAs mediating pro-myelinating signals suggests an active involvement of these non-coding RNAs in the homeostatic response toward neuroinflammatory injury.
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miR-6983 is downregulated in oligodendrocytes during experimental autoimmune encephalomyelitis (EAE), an animal model of demyelination, and is associated with disrupted ferroptosis pathways that are implicated in demyelination and neurodegeneration.
“miR-6983 is downregulated in oligodendrocytes during experimental autoimmune encephalomyelitis (EAE), an animal model of demyelination, and is associated with disrupted ferroptosis pathways that are implicated in demyelination and neurodegeneration65.”
From Mouse microglia express unique miRNA-mRNA networks to facilitate age-specific functions in the developing central nervous system (2023) · cites this paper as [65]
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Zhang, Y., Chen, K., Sloan, S. A., Bennett, M. L., Scholze, A. R., O'Keeffe, S., Phatnani, H. P., Guarnieri, P., Caneda, C., Ruderisch, N., et al. (2014) · The Journal of Neuroscience · doi:10.1523/jneurosci.1860-14.2014 · Cited by 4,875 · see citing works
Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility
International Multiple Sclerosis Genetics Consortium, Patsopoulos, N. A., Baranzini, S. E., Santaniello, A., Shoostari, P., Cotsapas, C., Wong, G., Beecham, A. H., James, T., Replogle, J., et al. (2019) · Science · doi:10.1126/science.aav7188 · Cited by 1,471 · see citing works
Self-citationCell-Type-Based Analysis of MicroRNA Profiles in the Mouse Brain
He, M., Liu, Y., Wang, X., Zhang, M. Q., Hannon, G. J., & Huang, Z. J. (2012) · Neuron · doi:10.1016/j.neuron.2011.11.010 · Cited by 277 · see citing works
MicroRNA-23a promotes myelination in the central nervous system
Lin, S.-T., Huang, Y., Zhang, L., Heng, M. Y., Ptáček, L. J., & Fu, Y.-H. (2013) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1317182110 · Cited by 117 · see citing works
MicroRNA Profiling Reveals Marker of Motor Neuron Disease in ALS Models
Hoye, M. L., Koval, E. D., Wegener, A. J., Hyman, T. S., Yang, C., O'Brien, D. R., Miller, R. L., Cole, T., Schoch, K. M., Shen, T., et al. (2017) · The Journal of Neuroscience · doi:10.1523/jneurosci.3582-16.2017 · Cited by 82 · see citing works
Flagged first, then by citations
Research works printed but not linked: 53
- [1]Bartel DP MicroRNAs: target recognition and regulatory functions Cell. 2009 136 2 215 233 10.1016/j.cell.2009.01.002 19167326 PMC3794896 · DOI · Paper page
- [2]Miranda KC Huynh T Tay Y Ang YS Tam WL Thomson AM A pattern-based method for the identification of MicroRNA binding sites and their corresponding heteroduplexes Cell. 2006 126 6 1203 1217 10.1016/j.cell.2006.07.031 16990141 · DOI · Paper page
- [3]Cochella L Hobert O Diverse functions of microRNAs in nervous system development Curr Top Dev Biol 2012 99 115 143 10.1016/B978-0-12-387038-4.00005-7 22365737 · DOI
- [4]Simons M Nave KA Oligodendrocytes: myelination and axonal support Cold Spring Harb Perspect Biol 2015 8 1 a020479 10.1101/cshperspect.a020479 26101081 PMC4691794 · DOI
- [5]Mayoral SR Chan JR The environment rules: spatiotemporal regulation of oligodendrocyte differentiation Curr Opin Neurobiol 2016 39 47 52 10.1016/j.conb.2016.04.002 27128881 PMC4987220 · DOI
- [6]Emery B Lu QR Transcriptional and epigenetic regulation of oligodendrocyte development and myelination in the central nervous system Cold Spring Harb Perspect Biol 2015 7 9 a020461 10.1101/cshperspect.a020461 26134004 PMC4563712 · DOI
- [7]Zhao X He X Han X Yu Y Ye F Chen Y MicroRNA-mediated control of oligodendrocyte differentiation Neuron. 2010 65 5 612 626 10.1016/j.neuron.2010.02.018 20223198 PMC2855245 · DOI · Paper page
- [8]Hauser SL, Goodin DS. Multiple sclerosis and other demyelinating diseases. In: Kasper DL, Fauci AS, Hauser SL, Longo DL, Jameson JL, Loscalzo J, editors. Harrison's Principles of Internal Medicine. New York: McGraw-Hill Education; 2015.
- [9]Junker A, Krumbholz M, Eisele S, Mohan H, Augstein F, Bittner R, et al. MicroRNA profiling of multiple sclerosis lesions identifies modulators of the regulatory protein CD47. Brain. 2009;132(Pt 12):3342–52. 19952055
- [10]Lescher J Paap F Schultz V Redenbach L Scheidt U Rosewich H MicroRNA regulation in experimental autoimmune encephalomyelitis in mice and marmosets resembles regulation in human multiple sclerosis lesions J Neuroimmunol 2012 246 1-2 27 33 10.1016/j.jneuroim.2012.02.012 22445295 · DOI
- [12]Franklin RJ Goldman SA Glia disease and repair-remyelination Cold Spring Harb Perspect Biol 2015 7 7 a020594 10.1101/cshperspect.a020594 25986556 PMC4484968 · DOI
- [13]Steinman L Assessment of animal models for MS and demyelinating disease in the design of rational therapy Neuron. 1999 24 3 511 514 10.1016/S0896-6273(00)81107-1 10595504 · DOI
- [14]Nakanishi K Anatomy of RISC: how do small RNAs and chaperones activate Argonaute proteins? Wiley Interdiscip Rev RNA 2016 7 5 637 660 10.1002/wrna.1356 27184117 PMC5084781 · DOI
- [15]Lu QR Sun T Zhu Z Ma N Garcia M Stiles CD Common developmental requirement for Olig function indicates a motor neuron/oligodendrocyte connection Cell. 2002 109 1 75 86 10.1016/S0092-8674(02)00678-5 11955448 · DOI
- [16]Flores-Obando RE, Freidin MM, Abrams CK. Rapid and specific immunomagnetic isolation of mouse primary oligodendrocytes. J Vis Exp. 2018;135. PMC6101296 29863670
- [17]Didonna A Cekanaviciute E Oksenberg JR Baranzini SE Immune cell-specific transcriptional profiling highlights distinct molecular pathways controlled by Tob1 upon experimental autoimmune encephalomyelitis Sci Rep 2016 6 31603 10.1038/srep31603 27546286 PMC4992865 · DOI
- [18]Didonna A Canto E Shams H Isobe N Zhao C Caillier SJ Sex-specific Tau methylation patterns and synaptic transcriptional alterations are associated with neural vulnerability during chronic neuroinflammation J Autoimmun 2019 101 56 69 10.1016/j.jaut.2019.04.003 31010726 PMC6561733 · DOI
- [19]Robinson MD McCarthy DJ Smyth GK edgeR: a Bioconductor package for differential expression analysis of digital gene expression data Bioinformatics. 2010 26 1 139 140 10.1093/bioinformatics/btp616 19910308 PMC2796818 · DOI · Paper page
- [20]Spandidos A, Wang X, Wang H, Seed B. PrimerBank: a resource of human and mouse PCR primer pairs for gene expression detection and quantification. Nucleic Acids Res 2010;38(Database issue):D792-D799. PMC2808898 19906719
- [21]Zhou Y Zhou B Pache L Chang M Khodabakhshi AH Tanaseichuk O Metascape provides a biologist-oriented resource for the analysis of systems-level datasets Nat Commun 2019 10 1 1523 10.1038/s41467-019-09234-6 30944313 PMC6447622 · DOI · Paper page
- [22]Zakirova Z Fanutza T Bonet J Readhead B Zhang W Yi Z Mutations in THAP1/DYT6 reveal that diverse dystonia genes disrupt similar neuronal pathways and functions PLoS Genet 2018 14 1 e1007169 10.1371/journal.pgen.1007169 29364887 PMC5798844 · DOI
- [23]Agarwal V, Bell GW, Nam JW, Bartel DP. Predicting effective microRNA target sites in mammalian mRNAs. Elife. 2015;4. PMC4532895 26267216
- [24]Zhou Q Wang S Anderson DJ Identification of a novel family of oligodendrocyte lineage-specific basic helix-loop-helix transcription factors Neuron. 2000 25 2 331 343 10.1016/S0896-6273(00)80898-3 10719889 · DOI · Paper page
- [25]Moyon S Huynh JL Dutta D Zhang F Ma D Yoo S Functional characterization of DNA methylation in the oligodendrocyte lineage Cell Rep 2016 15 4 748 760 10.1016/j.celrep.2016.03.060 27149841 PMC5063656 · DOI
- [26]Ye F Chen Y Hoang T Montgomery RL Zhao XH Bu H HDAC1 and HDAC2 regulate oligodendrocyte differentiation by disrupting the beta-catenin-TCF interaction Nat Neurosci 2009 12 7 829 838 10.1038/nn.2333 19503085 PMC2701973 · DOI · Paper page
- [27]Jiang M Liu L He X Wang H Lin W Wang H Regulation of PERK-eIF2alpha signalling by tuberous sclerosis complex-1 controls homoeostasis and survival of myelinating oligodendrocytes Nat Commun 2016 7 12185 10.1038/ncomms12185 27416896 PMC4947172 · DOI
- [28]Lagos-Quintana M Rauhut R Yalcin A Meyer J Lendeckel W Tuschl T Identification of tissue-specific microRNAs from mouse Curr Biol 2002 12 9 735 739 10.1016/S0960-9822(02)00809-6 12007417 · DOI · Paper page
- [29]Dugas JC Cuellar TL Scholze A Ason B Ibrahim A Emery B Dicer1 and miR-219 Are required for normal oligodendrocyte differentiation and myelination Neuron. 2010 65 5 597 611 10.1016/j.neuron.2010.01.027 20223197 PMC2843397 · DOI · Paper page
- [30]Recks MS Addicks K Kuerten S Spinal cord histopathology of MOG peptide 35-55-induced experimental autoimmune encephalomyelitis is time- and score-dependent Neurosci Lett 2011 494 3 227 231 10.1016/j.neulet.2011.03.021 21406210 · DOI
- [31]Petratos S Ozturk E Azari MF Kenny R Lee JY Magee KA Limiting multiple sclerosis related axonopathy by blocking Nogo receptor and CRMP-2 phosphorylation Brain. 2012 135 Pt 6 1794 1818 10.1093/brain/aws100 22544872 PMC3589918 · DOI
- [32]Marinelli C Bertalot T Zusso M Skaper SD Giusti P Systematic review of pharmacological properties of the oligodendrocyte lineage Front Cell Neurosci 2016 10 27 10.3389/fncel.2016.00027 26903812 PMC4751280 · DOI
- [33]Budde H Schmitt S Fitzner D Opitz L Salinas-Riester G Simons M Control of oligodendroglial cell number by the miR-17-92 cluster Development. 2010 137 13 2127 2132 10.1242/dev.050633 20504959 · DOI · Paper page
- [34]Lin Y Jamison S Lin W Interferon-gamma activates nuclear factor-kappa B in oligodendrocytes through a process mediated by the unfolded protein response PLoS One 2012 7 5 e36408 10.1371/journal.pone.0036408 22574154 PMC3344863 · DOI
- [35]Lewis BP Burge CB Bartel DP Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets Cell. 2005 120 1 15 20 10.1016/j.cell.2004.12.035 15652477 · DOI · Paper page
- [36]Awan HM Shah A Rashid F Wei S Chen L Shan G Comparing two approaches of miR-34a target identification, biotinylated-miRNA pulldown vs miRNA overexpression RNA Biol 2018 15 1 55 61 10.1080/15476286.2017.1391441 29028450 PMC5786020 · DOI
- [39]Zhang Y Sloan SA Clarke LE Caneda C Plaza CA Blumenthal PD Purification and characterization of progenitor and mature human astrocytes reveals transcriptional and functional differences with mouse Neuron. 2016 89 1 37 53 10.1016/j.neuron.2015.11.013 26687838 PMC4707064 · DOI · Paper page
- [40]Lubetzki C Stankoff B Demyelination in multiple sclerosis Handb Clin Neurol 2014 122 89 99 10.1016/B978-0-444-52001-2.00004-2 24507514 PMC7152443 · DOI
- [42]Hoye ML Archambault AS Gordon TM Oetjen LK Cain MD Klein RS MicroRNA signature of central nervous system-infiltrating dendritic cells in an animal model of multiple sclerosis Immunology. 2018 155 1 112 122 10.1111/imm.12934 29749614 PMC6099169 · DOI
- [43]Shin D Shin JY McManus MT Ptacek LJ Fu YH Dicer ablation in oligodendrocytes provokes neuronal impairment in mice Ann Neurol 2009 66 6 843 857 10.1002/ana.21927 20035504 PMC2885004 · DOI
- [45]Liu XS Chopp M Pan WL Wang XL Fan BY Zhang Y MicroRNA-146a promotes oligodendrogenesis in stroke Mol Neurobiol 2017 54 1 227 237 10.1007/s12035-015-9655-7 26738853 PMC4935640 · DOI
- [46]Tripathi A, Volsko C, Garcia JP, Agirre E, Allan KC, Tesar PJ, et al. Oligodendrocyte intrinsic miR-27a controls myelination and remyelination. Cell Rep. 2019;29(4):904–19 e9. PMC6874400 31644912
- [47]Su X Xiao D Huang L Li S Ying J Tong Y MicroRNA alteration in developing rat oligodendrocyte precursor cells induced by hypoxia-ischemia J Neuropathol Exp Neurol 2019 78 10 900 909 10.1093/jnen/nlz071 31403686 · DOI
- [48]Factor DC, Barbeau AM, Allan KC, Hu LR, Madhavan M, Hoang AT, et al. Cell type-specific intralocus interactions reveal oligodendrocyte mechanisms in MS. Cell. 2020;181(2):382–95. PMC7426147 32246942
- [49]Li X Li Y Lu H miR-1193 suppresses proliferation and invasion of human breast cancer cells through directly targeting IGF2BP2 Oncol Res 2017 25 4 579 585 10.3727/97818823455816X14760504645779 27733218 PMC7841109 · DOI
- [50]Shen L Du X Ma H Mei S miR-1193 Suppresses the proliferation and invasion of human T-cell leukemia cells through directly targeting the Transmembrane 9 Superfamily 3 (TM9SF3) Oncol Res 2017 25 9 1643 1651 10.3727/096504017X14908284471361 28390114 PMC7841265 · DOI
- [51]Wang L, Song Y, Wang H, Liu K, Shao Z, Shang Z. MiR-210-3p-EphrinA3-PI3K/AKT axis regulates the progression of oral cancer. J Cell Mol Med. 2020;24(7):4011–22. PMC7171305 32180353
- [52]Nakada C, Hijiya N, Tsukamoto Y, Yano S, Kai T, Uchida T, et al. A transgenic mouse expressing miR-210 in proximal tubule cells shows mitochondrial alteration: possible association of miR-210 with a shift in energy metabolism. J Pathol. 2020;251(1):12–25. 32073141
- [53]Li B, Dasgupta C, Huang L, Meng X, Zhang L. MiRNA-210 induces microglial activation and regulates microglia-mediated neuroinflammation in neonatal hypoxic-ischemic encephalopathy. Cell Mol Immunol. 2020;17(9):976–91. PMC7608107 31300734
- [54]Winterstein C Trotter J Kramer-Albers EM Distinct endocytic recycling of myelin proteins promotes oligodendroglial membrane remodeling J Cell Sci 2008 121 Pt 6 834 842 10.1242/jcs.022731 18303048 · DOI
- [55]Cao JY Dixon SJ Mechanisms of ferroptosis Cell Mol Life Sci 2016 73 11-12 2195 2209 10.1007/s00018-016-2194-1 27048822 PMC4887533 · DOI · Paper page
- [56]Lee NJ Ha SK Sati P Absinta M Nair G Luciano NJ Potential role of iron in repair of inflammatory demyelinating lesions J Clin Invest 2019 129 10 4365 4376 10.1172/JCI126809 31498148 PMC6763243 · DOI
- [57]Jablonska B Scafidi J Aguirre A Vaccarino F Nguyen V Borok E Oligodendrocyte regeneration after neonatal hypoxia requires FoxO1-mediated p27Kip1 expression J Neurosci 2012 32 42 14775 14793 10.1523/JNEUROSCI.2060-12.2012 23077062 PMC3517297 · DOI
- [58]Martinez B Peplow PV MicroRNAs as disease progression biomarkers and therapeutic targets in experimental autoimmune encephalomyelitis model of multiple sclerosis Neural Regen Res 2020 15 10 1831 1837 10.4103/1673-5374.280307 32246624 PMC7513985 · DOI
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Walsh, A. D., Stone, S., Freytag, S., Aprico, A., Kilpatrick, T. J., Ansell, B. R. E., & Binder, M. D. (2023) · Communications Biology · doi:10.1038/s42003-023-04926-8 · Cited by 9 · see citing works
- Authors
- Ma, Q., Matsunaga, A., Ho, B., Oksenberg, J. R., & Didonna, A.
- Venue
- Journal of Neuroinflammation
- Published
- 2020-10-12
- Volume
- 17
- Issue
- 1
- ISSN
- 1742-2094
- PMC
- PMC7552381
- Cited by
- 15
- References
- 5
- Language
- en
- Funders
- Fondazione Italiana Sclerosi Multipla (2014/B/1, 2017/B/3)
- National Multiple Sclerosis Society (RG-1506-04510)
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