Intestinal dysbiosis in preterm infants preceding necrotizing enterocolitis: a systematic review and meta-analysis
Open accessAbstract
BACKGROUND: Necrotizing enterocolitis (NEC) is a catastrophic disease of preterm infants, and microbial dysbiosis has been implicated in its pathogenesis. Studies evaluating the microbiome in NEC and preterm infants lack power and have reported inconsistent results. METHODS AND RESULTS: Our objectives were to perform a systematic review and meta-analyses of stool microbiome profiles in preterm infants to discern and describe microbial dysbiosis prior to the onset of NEC and to explore heterogeneity among studies. We searched MEDLINE, PubMed, CINAHL, and conference abstracts from the proceedings of Pediatric Academic Societies and reference lists of relevant identified articles in April 2016. Studies comparing the intestinal microbiome in preterm infants who developed NEC to those of controls, using culture-independent molecular techniques and reported α and β-diversity metrics, and microbial profiles were included. In addition, 16S ribosomal ribonucleic acid (rRNA) sequence data with clinical meta-data were requested from the authors of included studies or searched in public data repositories. We reprocessed the 16S rRNA sequence data through a uniform analysis pipeline, which were then synthesized by meta-analysis. We included 14 studies in this review, and data from eight studies were available for quantitative synthesis (106 NEC cases, 278 controls, 2944 samples). The age of NEC onset was at a mean ± SD of 30.1 ± 2.4 weeks post-conception (n = 61). Fecal microbiome from preterm infants with NEC had increased relative abundances of Proteobacteria and decreased relative abundances of Firmicutes and Bacteroidetes prior to NEC onset. Alpha- or beta-diversity indices in preterm infants with NEC were not consistently different from controls, but we found differences in taxonomic profiles related to antibiotic exposure, formula feeding, and mode of delivery. Exploring heterogeneity revealed differences in microbial profiles by study and the target region of the 16S rRNA gene (V1-V3 or V3-V5). CONCLUSIONS: Microbial dysbiosis preceding NEC in preterm infants is characterized by increased relative abundances of Proteobacteria and decreased relative abundances of Firmicutes and Bacteroidetes. Microbiome optimization may provide a novel strategy for preventing NEC.
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Alterations in microbiota may contribute to disease progression in some conditions, including inflammatory bowel diseases.
“It is very likely that this may contribute to disease progression in some conditions, including inflammatory bowel diseases 22,23 ,”
From Human microbiome myths and misconceptions (2023) · cites this paper as [23]
The Background and Discussion (no page numbers available) implicate intestinal dysbiosis in the development of necrotizing enterocolitis in preterm infants, supporting the cautious idea that microbiota alterations may contribute to disease. The paper does not address inflammatory bowel diseases or establish an effect on disease progression in those conditions; its findings concern NEC onset. (LLM, conf=0.85)
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- Authors
- Pammi, M., Cope, J., Tarr, P. I., Warner, B. B., Morrow, A. L., Mai, V., Gregory, K. E., Kroll, J. S., McMurtry, V., Ferris, M. J., Engstrand, L., Lilja, H. E., Hollister, E. B., Versalovic, J., & Neu, J.
- Affiliations
- Baylor College of Medicine (US)
- Washington University in St. Louis (US)
- Cincinnati Children's Hospital Medical Center (US)
- University of Florida Health (US)
- Brigham and Women's Hospital (US)
- Imperial College London (GB)
- Children's Hospital of New Orleans (US)
- Karolinska Institutet (SE)
- Corresponding author
- Pammi, Mohan
- ORCID
- Venue
- Microbiome
- Published
- 2017-03-09
- Volume
- 5
- Issue
- 1
- Pages
- 31-31
- ISSN
- 2049-2618 (ISSN-L)
- PMC
- PMC5343300
- OpenAlex
- W2592537218
- Cited by
- 708
- References
- 4
- Citations by year
- 2026: 68 · 2025: 76 · 2024: 83 · 2023: 107 · 2022: 87 · 2021: 92 · 2020: 64 · 2019: 55 · 2018: 51 · 2017: 24
- FWCI
- 5.46
- Type
- journal article
- Language
- en
- Open access
- gold
- doi.org
- Locations
- Microbiome (publishedVersion, cc-by)
- PubMed Central (publishedVersion, cc-by)
- PubMed (publishedVersion)
- Uppsala University Publications (Uppsala University) (submittedVersion, other-oa)
- Spiral (Imperial College London) (submittedVersion, other-oa)
- Funders
- National Institute of Diabetes and Digestive and Kidney Diseases (P30DK052574)
- National Institute of Allergy and Infectious Diseases (UH3 AI083265)
- Washington University Institute of Clinical and Translational Science (UL1RR024992)
- National Institutes of Health (K23 NR011320-01)
- Harvard Catalyst CTSA Grant (UL1 RR 025758-01)
- Eunice Kennedy Shriver National Institute of Child Health and Human Development (R01 HD059140)
- National Institute for Health Research (NIHR) Biomedical Research Centre
- Winnicott Foundation
- Topics
- Health Sciences › Nursing › Nutrition and Dietetics › Infant Nutrition and Health
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Gut microbiota and health
- Health Sciences › Medicine › Pediatrics, Perinatology and Child Health › Infant Development and Preterm Care
- Keywords
- necrotizing enterocolitis, preterm infants, gut dysbiosis, gut microbiota, fecal microbiota, Proteobacteria, Firmicutes, Bacteroidetes, microbial diversity, antibiotic exposure, bottle feeding, mode of delivery, NEC prevention
- MeSH terms
- Firmicutes, Bacillota, Gastrointestinal Microbiome, Bacteria, Bacteroides, Feces, Humans, Infant, Newborn, Infant, Premature, Infant, Premature, Diseases, Intestines, RNA, Ribosomal, 16S, Enterocolitis, Necrotizing, Proteobacteria, Dysbiosis
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