The Human Microbiome Project: A Community Resource for the Healthy Human Microbiome
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Geography, diet, infection and drug use are among factors that shape the human gut microbiome.
“Multiple factors affect the composition of the human gut microbiome, including geography, diet, infection and drug usage56,61–64.”
From Intestinal microbiota signatures of clinical response and immune-related adverse events in melanoma patients treated with anti-PD-1 (2022) · cites this paper as [62]
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Davis, B., & Bajaj, J. (2017) · Seminars in Liver Disease · doi:10.1055/s-0037-1602763 · Cited by 34 · see citing works
Tremblay, A., Fatani, A., Ford, A. L., Piano, A., Nagulesapillai, V., Auger, J., MacPherson, C. W., Christman, M. C., Tompkins, T. A., & Dahl, W. J. (2021) · Journal of Dietary Supplements · doi:10.1080/19390211.2020.1749751 · Cited by 31 · see citing works
- Authors
- Gevers, D., Knight, R., Petrosino, J. F., Huang, K., McGuire, A. L., Birren, B. W., Nelson, K. E., White, O., Methé, B. A., & Huttenhower, C.
- Affiliations
- Broad Institute (US)
- Howard Hughes Medical Institute (US)
- Baylor College of Medicine (US)
- J. Craig Venter Institute (US)
- University of Maryland, Baltimore (US)
- Corresponding author
- Methé, Barbara A.
- Huttenhower, Curtis
- ORCID
- Venue
- PLoS Biology
- Publisher
- Public Library of Science (PLoS)
- Published
- 2012-08-14
- Volume
- 10
- Issue
- 8
- Pages
- e1001377
- ISSN
- 1544-9173 (ISSN-L)
- 1545-7885
- PMC
- PMC3419203
- OpenAlex
- W1552346114
- Cited by
- 493
- References
- 74
- Citations by year
- 2026: 19 · 2025: 36 · 2024: 27 · 2023: 40 · 2022: 45 · 2021: 57 · 2020: 44 · 2019: 34 · 2018: 26 · 2017: 32 · 2016: 36 · 2015: 29 · 2014: 27 · 2013: 37 · 2012: 3
- FWCI
- 12.35
- Type
- journal article
- Language
- en
- Open access
- gold
- doi.org
- Locations
- PLoS Biology (publishedVersion, cc-by)
- Europe PMC (PubMed Central) (publishedVersion, cc-by)
- PubMed Central (publishedVersion, cc-by)
- PubMed (publishedVersion)
- eScholarship (California Digital Library) (submittedVersion)
- Digital Access to Scholarship at Harvard (DASH) (Harvard University) (submittedVersion, cc-by)
- DOAJ (DOAJ: Directory of Open Access Journals) (submittedVersion)
- DSpace@MIT (Massachusetts Institute of Technology) (submittedVersion, cc-by-nc)
- PLoS eBooks
- Funders
- National Science Foundation (1053486)
- Howard Hughes Medical Institute
- National Institutes of Health (DBI-1053486)
- National Human Genome Research Institute (U54HG003067, U54HG004969, U01HG004866, R01HG005969, R01HG004872, U54HG004973)
- National Institute of Allergy and Infectious Diseases (U54AI084844)
- National Institute of Diabetes and Digestive and Kidney Diseases (P30DK043351)
- Division of Biological Infrastructure (DBI-1053486)
- Army Research Office (W911NF-11-1-0473, W911NF, W911NF-11)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Gut microbiota and health
- Health Sciences › Dentistry › Periodontics › Oral microbiology and periodontitis research
- Physical Sciences › Environmental Science › Ecology › Microbial Community Ecology and Physiology
- Keywords
- Human Microbiome Project, human microbiome, microbial communities, community resources
- MeSH terms
- Health, Humans, Organizations, Phylogeny, RNA, Ribosomal, 16S, Ecosystem, Computational Biology, Internet, Genes, rRNA, Genomics, Metagenome, High-Throughput Nucleotide Sequencing
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
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