The DOI matches its Crossref record; 7 of the 7 references it cites were found in a registry or an index.
Sequestration by IFIT1 Impairs Translation of 2′O-unmethylated Capped RNA
Open accessAbstract
Viruses that generate capped RNA lacking 2'O methylation on the first ribose are severely affected by the antiviral activity of Type I interferons. We used proteome-wide affinity purification coupled to mass spectrometry to identify human and mouse proteins specifically binding to capped RNA with different methylation states. This analysis, complemented with functional validation experiments, revealed that IFIT1 is the sole interferon-induced protein displaying higher affinity for unmethylated than for methylated capped RNA. IFIT1 tethers a species-specific protein complex consisting of other IFITs to RNA. Pulsed stable isotope labelling with amino acids in cell culture coupled to mass spectrometry as well as in vitro competition assays indicate that IFIT1 sequesters 2'O-unmethylated capped RNA and thereby impairs binding of eukaryotic translation initiation factors to 2'O-unmethylated RNA template, which results in inhibition of translation. The specificity of IFIT1 for 2'O-unmethylated RNA serves as potent antiviral mechanism against viruses lacking 2'O-methyltransferase activity and at the same time allows unperturbed progression of the antiviral program in infected cells.
Overview
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Verification
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
Citations
Cites
Cox, J., & Mann, M. (2008) · Nature Biotechnology · doi:10.1038/nbt.1511 · Cited by 14,855
Global quantification of mammalian gene expression control
Schwanhäusser, B., Busse, D., Li, N., Dittmar, G., Schuchhardt, J., Wolf, J., Chen, W., & Selbach, M. (2011) · Nature · doi:10.1038/nature10098 · Cited by 6,566 · cited 9×
“For data analysis from pulsed SILAC experiments, we used log-transformed heavy to light protein ratios.”
MethodInfluentialRIG-I-mediated antiviral responses to single-stranded RNA bearing 5’-phosphates
Pichlmair, A., Schulz, O., Tan, C. P., Näslund, T. I., Liljeström, P., Weber, F., & Reis e Sousa, C. (2006) · Science · doi:10.1126/science.1132998 · Cited by 2,210
Self-citationInterferon-inducible antiviral effectors
Sadler, A. J., & Williams, B. R. G. (2008) · Nature Reviews Immunology · doi:10.1038/nri2314 · Cited by 2,160
Molecular mechanisms of translational control
Gebauer, F., & Hentze, M. W. (2004) · Nature Reviews Molecular Cell Biology · doi:10.1038/nrm1488 · Cited by 991
Quantitative proteomics reveals subset-specific viral recognition in dendritic cells
Luber, C. A., Cox, J., Lauterbach, H., Fancke, B., Selbach, M., Tschopp, J., Akira, S., Wiegand, M., Hochrein, H., O'Keeffe, M., et al. (2010) · Immunity · doi:10.1016/j.immuni.2010.01.013 · Cited by 576
Quantitative proteomics combined with BAC TransgeneOmics reveals in vivo protein interactions
Hubner, N. C., Bird, A. W., Cox, J., Splettstoesser, B., Bandilla, P., Poser, I., Hyman, A., & Mann, M. (2010) · Journal of Cell Biology · doi:10.1083/jcb.200911091 · Cited by 440
Research works printed but not linked: 37
- GA Versteeg, 2010, Viral tricks to grid-lock the type I interferon system, Curr Opin Microbiol, 13, 508, 10.1016/j.mib.2010.05.009 · DOI · Paper page
- A Iwasaki, 2010, Regulation of adaptive immunity by the innate immune system, Science, 327, 291, 10.1126/science.1183021 · DOI · Paper page
- V Hornung, 2010, Intracellular DNA recognition, Nat Rev Immunol, 10, 123, 10.1038/nri2690 · DOI · Paper page
- H Kato, 2011, RIG-I-like receptors: cytoplasmic sensors for non-self RNA, Immunol Rev, 243, 91, 10.1111/j.1600-065X.2011.01052.x · DOI · Paper page
- I Topisirovic, 2011, Cap and cap-binding proteins in the control of gene expression, Wiley Interdiscip Rev RNA, 2, 277, 10.1002/wrna.52 · DOI · Paper page
- A Pichlmair, 2007, Innate Recognition of Viruses, Immunity, 27, 370, 10.1016/j.immuni.2007.08.012 · DOI · Paper page
- E Decroly, 2012, Conventional and unconventional mechanisms for capping viral mRNA, Nat Rev Microbiol, 10, 51, 10.1038/nrmicro2675 · DOI · Paper page
- RJ Colonno, 1976, Newcastle disease virus mRNA lacks 2′-O-methylated nucleotides, Nature, 261, 611, 10.1038/261611a0 · DOI
- R Zust, 2011, Ribose 2′-O-methylation provides a molecular signature for the distinction of self and non-self mRNA dependent on the RNA sensor Mda5, Nat Immunol, 12, 137, 10.1038/ni.1979 · DOI · Paper page
- V Hornung, 2006, 5′-Triphosphate RNA is the ligand for RIG-I, Science, 314, 994, 10.1126/science.1132505 · DOI · Paper page
- H Kato, 2008, Length-dependent recognition of double-stranded ribonucleic acids by retinoic acid-inducible gene-I and melanoma differentiation-associated gene 5, J Exp Med, 205, 1601, 10.1084/jem.20080091 · DOI · Paper page
- MS Diamond, 2013, The broad-spectrum antiviral functions of IFIT and IFITM proteins, Nat Rev Immunol, 13, 46, 10.1038/nri3344 · DOI · Paper page
- A Pichlmair, 2011, IFIT1 is an antiviral protein that recognizes 5′-triphosphate RNA, Nat Immunol, 12, 624, 10.1038/ni.2048 · DOI · Paper page
- S Daffis, 2010, 2′-O methylation of the viral mRNA cap evades host restriction by IFIT family members, Nature, 468, 452, 10.1038/nature09489 · DOI · Paper page
- V Fensterl, 2012, Interferon-induced Ifit2/ISG54 protects mice from lethal VSV neuropathogenesis, PLoS Pathog, 8, e1002712, 10.1371/journal.ppat.1002712 · DOI · Paper page
- KJ Szretter, 2012, 2′-O methylation of the viral mRNA cap by West Nile virus evades ifit1-dependent and -independent mechanisms of host restriction in vivo, PLoS Pathog, 8, e1002698, 10.1371/journal.ppat.1002698 · DOI · Paper page
- YM Abbas, 2013, Structural basis for viral 5′-PPP-RNA recognition by human IFIT proteins, Nature, 494, 60, 10.1038/nature11783 · DOI · Paper page
- SD Shapira, 2009, A physical and regulatory map of host-influenza interactions reveals pathways in H1N1 infection, Cell, 139, 1255, 10.1016/j.cell.2009.12.018 · DOI · Paper page
- Y Furuichi, 2001, Caps on Eukaryotic mRNAs, eLS, 10.1038/npg.els.0000891 · doi:10.1038/npg.els.0000891
- S Saha, 2006, Identification of Japanese encephalitis virus-inducible genes in mouse brain and characterization of GARG39/IFIT2 as a microtubule-associated protein, J Gen Virol, 87, 3285, 10.1099/vir.0.82107-0 · DOI
- J Li, 2005, Amino acid residues within conserved domain VI of the vesicular stomatitis virus large polymerase protein essential for mRNA cap methyltransferase activity, J Virol, 79, 13373, 10.1128/JVI.79.21.13373-13384.2005 · DOI
- J Li, 2006, A unique strategy for mRNA cap methylation used by vesicular stomatitis virus, Proc Natl Acad Sci U S A, 103, 8493, 10.1073/pnas.0509821103 · DOI
- M Morita, 2012, A novel 4EHP-GIGYF2 translational repressor complex is essential for mammalian development, Mol Cell Biol, 32, 3585, 10.1128/MCB.00455-12 · DOI · Paper page
- PF Cho, 2005, A new paradigm for translational control: inhibition via 5′-3′ mRNA tethering by Bicoid and the eIF4E cognate 4EHP, Cell, 121, 411, 10.1016/j.cell.2005.02.024 · DOI · Paper page
- CE Sripati, 1976, Methylated, blocked 5′ termini of yeast mRNA, J Biol Chem, 251, 2898, 10.1016/S0021-9258(17)33475-0 · doi:10.1016/s0021-9258(17)33475-0
- D Zimmern, 1975, The 5′ end group of tobacco mosaic virus RNA is m7G5′ ppp5′ Gp, Nucleic Acids Res, 2, 1189, 10.1093/nar/2.7.1189 · doi:10.1093/nar/2.7.1189
- M Bouloy, 1980, Both the 7-methyl and the 2′-O-methyl groups in the cap of mRNA strongly influence its ability to act as primer for influenza virus RNA transcription, Proc Natl Acad Sci U S A, 77, 3952, 10.1073/pnas.77.7.3952 · DOI
- P Fechter, 2005, Recognition of mRNA cap structures by viral and cellular proteins, J Gen Virol, 86, 1239, 10.1099/vir.0.80755-0 · DOI
- RW Ruigrok, 2010, Towards an atomic resolution understanding of the influenza virus replication machinery, Curr Opin Struct Biol, 20, 104, 10.1016/j.sbi.2009.12.007 · DOI
- R Muller, 1995, Characterization of clone 13, a naturally attenuated avirulent isolate of Rift Valley fever virus, which is altered in the small segment, Am J Trop Med Hyg, 53, 405, 10.4269/ajtmh.1995.53.405 · DOI · Paper page
- DF Stojdl, 2003, VSV strains with defects in their ability to shutdown innate immunity are potent systemic anti-cancer agents, Cancer Cell, 4, 263, 10.1016/S1535-6108(03)00241-1 · DOI · Paper page
- VG Tusher, 2001, Significance analysis of microarrays applied to the ionizing radiation response, Proc Natl Acad Sci U S A, 98, 5116, 10.1073/pnas.091062498 · DOI · Paper page
- N Eswar, 2006, Comparative protein structure modeling using Modeller, Curr Protoc Bioinformatics, Chapter 5, Unit 5 6
- NR Voss, 2010, 3V: cavity, channel and cleft volume calculator and extractor, Nucleic Acids Res, 38, W555, 10.1093/nar/gkq395 · DOI · Paper page
- SY Liu, 2012, Systematic identification of type I and type II interferon-induced antiviral factors, Proc Natl Acad Sci U S A, 109, 4239, 10.1073/pnas.1114981109 · DOI · Paper page
- SA Martin, 1975, Modification of RNA by mRNA guanylyltransferase and mRNA (guanine-7-)methyltransferase from vaccinia virions, J Biol Chem, 250, 9330, 10.1016/S0021-9258(19)40647-9 · DOI · Paper page
- E Barbosa, 1978, mRNA(nucleoside-2′-)-methyltransferase from vaccinia virus. Characteristics and substrate specificity, J Biol Chem, 253, 7698, 10.1016/S0021-9258(17)34426-5 · doi:10.1016/s0021-9258(17)34426-5
Cited by
A complement–microglial axis drives synapse loss during virus-induced memory impairment
Vasek, M. J., Garber, C., Dorsey, D., Durrant, D. M., Bollman, B., Soung, A., Yu, J., Perez-Torres, C., Frouin, A., Wilton, D. K., et al. (2016) · Nature · doi:10.1038/nature18283 · Cited by 671
Discriminating self from non-self in nucleic acid sensing
Schlee, M., & Hartmann, G. (2016) · Nature Reviews Immunology · doi:10.1038/nri.2016.78 · Cited by 593
The promise of mRNA vaccines: a biotech and industrial perspective
Jackson, N. A. C., Kester, K. E., Casimiro, D., Gurunathan, S., & DeRosa, F. (2020) · npj Vaccines · doi:10.1038/s41541-020-0159-8 · Cited by 498
“[16] [17] [18] In addition, 2-O′-unmethylated capped RNA can be sequestered by cellular IFN-induced proteins with tetratricopeptide repeats (IFIT1) that prevent the initiation of translation, 19 or detected by the cytoplasmic RNA sensor MDA5.”
BackgroundOxeiptosis, a ROS-induced caspase-independent apoptosis-like cell-death pathway
Holze, C., Michaudel, C., Mackowiak, C., Haas, D. A., Benda, C., Hubel, P., Pennemann, F. L., Schnepf, D., Wettmarshausen, J., Braun, M., et al. (2018) · Nature Immunology · doi:10.1038/s41590-017-0013-y · Cited by 452
Self-citationThe RNA modification N6-methyladenosine as a novel regulator of the immune system
Shulman, Z., & Stern-Ginossar, N. (2020) · Nature Immunology · doi:10.1038/s41590-020-0650-4 · Cited by 426
Metadata
- Authors
- Habjan, M., Hubel, P., Lacerda, L., Benda, C., Holze, C., Eberl, C. H., Mann, A., Kindler, E., Gil-Cruz, C., Ziebuhr, J., Thiel, V., & Pichlmair, A.
- Venue
- PLoS Pathogens
- Publisher
- Public Library of Science (PLoS)
- Published
- 2013-10-03
- Volume
- 9
- Issue
- 10
- Pages
- e1003663
- ISSN
- 1553-7366 (ISSN-L)
- 1553-7374
- OpenAlex
- W2004727967
- Cited by
- 213
- References
- 7
- FWCI
- 7.71
- Type
- journal article
- Language
- en
- Open access
- gold
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review
How to cite
Cite CoChat for the checks on this page, and the paper for its own findings.
- This page
- CoChat. (2026). Citation check: Sequestration by IFIT1 Impairs Translation of 2′O-unmethylated Capped RNA. https://app.cochat.ai/papers/10.1371/journal.ppat.1003663
- The paper
- Habjan, M., Hubel, P., Lacerda, L., Benda, C., Holze, C., Eberl, C. H., Mann, A., Kindler, E., Gil-Cruz, C., Ziebuhr, J., Thiel, V., & Pichlmair, A. (2013). Sequestration by IFIT1 Impairs Translation of 2′O-unmethylated Capped RNA. PLoS Pathogens. https://doi.org/10.1371/journal.ppat.1003663
Data sources
Bibliographic data: Semantic Scholar, OpenAlex, Crossref.
Contains information from the Semantic Scholar Academic Graph Datasets, made available under the ODC Attribution License (ODC-BY 1.0).
Semantic Scholar’s data is described in: Kinney, R., et al. (2023). The Semantic Scholar Open Data Platform. arXiv:2301.10140.