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Endosomal phosphatidylinositol 3-phosphate controls synaptic vesicle cycling and neurotransmission

Liu, Guan‐Ting, Kochlamazashvili, Gaga, Puchkov, Dmytro, Müller, Rainer, Schultz, Carsten, Mackintosh, Albert I, Vollweiter, Dennis, Haucke, Volker, Soykan, Tolga·2022·The EMBO Journal

Abstract

Neural circuit function requires mechanisms for controlling neurotransmitter release and the activity of neuronal networks, including modulation by synaptic contacts, synaptic plasticity, and homeostatic scaling. However, how neurons intrinsically monitor and feedback control presynaptic neurotransmitter release and synaptic vesicle (SV) recycling to restrict neuronal network activity remains poorly understood at the molecular level. Here, we investigated the reciprocal interplay between neuronal endosomes, organelles of central importance for the function of synapses, and synaptic activity. We show that elevated neuronal activity represses the synthesis of endosomal lipid phosphatidylinositol 3‐phosphate [PI(3)P] by the lipid kinase VPS34. Neuronal activity in turn is regulated by endosomal PI(3)P, the depletion of which reduces neurotransmission as a consequence of perturbed SV endocytosis. We find that this mechanism involves Calpain 2‐mediated hyperactivation of Cdk5 downstream of receptor‐ and activity‐dependent calcium influx. Our results unravel an unexpected function for PI(3)P‐containing neuronal endosomes in the control of presynaptic vesicle cycling and neurotransmission, which may explain the involvement of the PI(3)P‐producing VPS34 kinase in neurological disease and neurodegeneration.

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Research works printed but not linked: 57

  1. Abbott LF, Regehr WG (2004) Synaptic computation. Nature 431: 796–803 · DOI · Paper page
  2. Armbruster M, Messa M, Ferguson SM, De Camilli P, Ryan TA (2013) Dynamin phosphorylation controls optimization of endocytosis for brief action potential bursts. Elife 2: e00845 · DOI
  3. Bago R, Malik N, Munson M, Prescott A, Davies P, Sommer E, Shpiro N, Ward R, Cross D, Ganley I et al (2014) Characterization of VPS34‐IN1, a selective inhibitor of Vps34, reveals that the phosphatidylinositol 3‐phosphate‐binding SGK3 protein kinase is a downstream target of class III phosphoinositide 3‐kinase. Biochem J 463: 413–427 · DOI · Paper page
  4. Balla T (2013) Phosphoinositides: tiny lipids with giant impact on cell regulation. Physiol Rev 93: 1019–1137 · DOI · Paper page
  5. Baudry M, Bi X (2016) Calpain‐1 and calpain‐2: the Yin and Yang of synaptic plasticity and neurodegeneration. Trends Neurosci 39: 235–245 · DOI
  6. Belevich I, Joensuu M, Kumar D, Vihinen H, Jokitalo E (2016) Microscopy image browser: a platform for segmentation and analysis of multidimensional datasets. PLoS Biol 14: e1002340 · DOI
  7. Chanaday NL, Cousin MA, Milosevic I, Watanabe S, Morgan JR (2019) The synaptic vesicle cycle revisited: new insights into the modes and mechanisms. J Neurosci 39: 8209–8216 · DOI · Paper page
  8. Cheung G, Cousin MA (2012) Adaptor protein complexes 1 and 3 are essential for generation of synaptic vesicles from activity‐dependent bulk endosomes. J Neurosci 32: 6014–6023 · DOI
  9. Cheung G, Cousin MA (2013) Synaptic vesicle generation from activity‐dependent bulk endosomes requires calcium and calcineurin. J Neurosci 33: 3370–3379 · DOI
  10. Davis GW, Goodman CS (1998) Synapse‐specific control of synaptic efficacy at the terminals of a single neuron. Nature 392: 82–86 · DOI
  11. Davis GW, Muller M (2015) Homeostatic control of presynaptic neurotransmitter release. Annu Rev Physiol 77: 251–270 · DOI · Paper page
  12. Delvendahl I, Kita K, Muller M (2019) Rapid and sustained homeostatic control of presynaptic exocytosis at a central synapse. Proc Natl Acad Sci USA 116: 23783–23789 · DOI
  13. Di Paolo G, De Camilli P (2006) Phosphoinositides in cell regulation and membrane dynamics. Nature 443: 651–657 · DOI · Paper page
  14. Enriquez‐Barreto L, Morales M (2016) The PI3K signaling pathway as a pharmacological target in Autism related disorders and Schizophrenia. Mol Cell Ther 4: 2 · DOI
  15. Ferguson SM, Brasnjo G, Hayashi M, Wölfel M, Collesi C, Giovedi S, Raimondi A, Gong L‐W, Ariel P, Paradise S et al (2007) A selective activity‐dependent requirement for dynamin 1 in synaptic vesicle endocytosis. Science 316: 570–574 · DOI
  16. Fili N, Calleja V, Woscholski R, Parker PJ, Larijani B (2006) Compartmental signal modulation: endosomal phosphatidylinositol 3‐phosphate controls endosome morphology and selective cargo sorting. Proc Natl Acad Sci USA 103: 15473–15478 · DOI
  17. Furuya T, Kim M, Lipinski M, Li J, Kim D, Lu T, Shen Y, Rameh L, Yankner B, Tsai L‐H et al (2010) Negative regulation of Vps34 by Cdk mediated phosphorylation. Mol Cell 38: 500–511 · DOI
  18. Geumann U, Schafer C, Riedel D, Jahn R, Rizzoli SO (2010) Synaptic membrane proteins form stable microdomains in early endosomes. Microsc Res Tech 73: 606–617 · DOI
  19. Hammond GR, Schiavo G, Irvine RF (2009) Immunocytochemical techniques reveal multiple, distinct cellular pools of PtdIns4P and PtdIns(4,5)P(2). Biochem J 422: 23–35 · DOI
  20. Jahn R, Fasshauer D (2012) Molecular machines governing exocytosis of synaptic vesicles. Nature 490: 201–207 · DOI
  21. Jahne S, Rizzoli SO, Helm MS (2015) The structure and function of presynaptic endosomes. Exp Cell Res 335: 172–179 · DOI
  22. Jeans AF, van Heusden FC, Al‐Mubarak B, Padamsey Z, Emptage NJ (2017) Homeostatic presynaptic plasticity is specifically regulated by P/Q‐type Ca(2+) channels at mammalian hippocampal synapses. Cell Rep 21: 341–350 · DOI
  23. Katz LC, Shatz CJ (1996) Synaptic activity and the construction of cortical circuits. Science 274: 1133–1138 · DOI · Paper page
  24. Kavalali ET, Jorgensen EM (2014) Visualizing presynaptic function. Nat Neurosci 17: 10–16 · DOI · Paper page
  25. Ketel K, Krauss M, Nicot AS, Puchkov D, Wieffer M, Muller R, Subramanian D, Schultz C, Laporte J, Haucke V (2016) A phosphoinositide conversion mechanism for exit from endosomes. Nature 529: 408–412 · DOI · Paper page
  26. Kim SH, Ryan TA (2010) CDK5 serves as a major control point in neurotransmitter release. Neuron 67: 797–809 · DOI
  27. Kim SH, Ryan TA (2013) Balance of calcineurin Aalpha and CDK5 activities sets release probability at nerve terminals. J Neurosci 33: 8937–8950 · DOI
  28. Kononenko N, Puchkov D, Classen G, Walter A, Pechstein A, Sawade L, Kaempf N, Trimbuch T, Lorenz D, Rosenmund C et al (2014) Clathrin/AP‐2 mediate synaptic vesicle reformation from endosome‐like vacuoles but are not essential for membrane retrieval at central synapses. Neuron 82: 981–988 · DOI
  29. Kremer JR, Mastronarde DN, McIntosh JR (1996) Computer visualization of three‐dimensional image data using IMOD. J Struct Biol 116: 71–76 · DOI
  30. Krishnan A, Zhang R, Yao V, Theesfeld CL, Wong AK, Tadych A, Volfovsky N, Packer A, Lash A, Troyanskaya OG (2016) Genome‐wide prediction and functional characterization of the genetic basis of autism spectrum disorder. Nat Neurosci 19: 1454–1462 · DOI
  31. Law F, Seo JH, Wang Z, DeLeon JL, Bolis Y, Brown A, Zong WX, Du G, Rocheleau CE (2017) The VPS34 PI3K negatively regulates RAB‐5 during endosome maturation. J Cell Sci 130: 2007–2017 · DOI
  32. Marder E, Goaillard JM (2006) Variability, compensation and homeostasis in neuron and network function. Nat Rev Neurosci 7: 563–574 · DOI · Paper page
  33. Mendoza PA, Silva P, Diaz J, Arriagada C, Canales J, Cerda O, Torres VA (2018) Calpain2 mediates Rab5‐driven focal adhesion disassembly and cell migration. Cell Adh Migr 12: 185–194 · DOI
  34. Micheva KD, Holz RW, Smith SJ (2001) Regulation of presynaptic phosphatidylinositol 4,5‐biphosphate by neuronal activity. J Cell Biol 154: 355–368 · DOI
  35. Miesenbock G, De Angelis DA, Rothman JE (1998) Visualizing secretion and synaptic transmission with pH‐sensitive green fluorescent proteins. Nature 394: 192–195 · DOI
  36. Miranda AM, Lasiecka ZM, Xu Y, Neufeld J, Shahriar S, Simoes S, Chan RB, Oliveira TG, Small SA, Di Paolo G (2018) Neuronal lysosomal dysfunction releases exosomes harboring APP C‐terminal fragments and unique lipid signatures. Nat Commun 9: 291 · DOI · Paper page
  37. Nelson SB, Valakh V (2015) Excitatory/inhibitory balance and circuit homeostasis in autism spectrum disorders. Neuron 87: 684–698 · DOI · Paper page
  38. Poc P, Gutzeit VA, Ast J, Lee J, Jones BJ, D'Este E, Mathes B, Lehmann M, Hodson DJ, Levitz J et al (2020) Interrogating surface versus intracellular transmembrane receptor populations using cell‐impermeable SNAP‐tag substrates. Chem Sci 11: 7871–7883 · DOI
  39. Raiborg C, Schink KO, Stenmark H (2013) Class III phosphatidylinositol 3‐kinase and its catalytic product PtdIns3P in regulation of endocytic membrane traffic. FEBS J 280: 2730–2742 · DOI
  40. Raimondi A, Ferguson S, Lou X, Armbruster M, Paradise S, Giovedi S, Messa M, Kono N, Takasaki J, Cappello V et al (2011) Overlapping role of dynamin isoforms in synaptic vesicle endocytosis. Neuron 70: 1100–1114 · DOI
  41. Rothman JS, Kocsis L, Herzog E, Nusser Z, Silver RA (2016) Physical determinants of vesicle mobility and supply at a central synapse. Elife 5: e15133 · DOI
  42. Sagona AP, Nezis IP, Pedersen NM, Liestol K, Poulton J, Rusten TE, Skotheim RI, Raiborg C, Stenmark H (2010) PtdIns(3)P controls cytokinesis through KIF13A‐mediated recruitment of FYVE‐CENT to the midbody. Nat Cell Biol 12: 362–371 · DOI
  43. Shah K, Lahiri DK (2014) Cdk5 activity in the brain—multiple paths of regulation. J Cell Sci 127: 2391–2400 · DOI
  44. Simonsen A, Lippe R, Christoforidis S, Gaullier JM, Brech A, Callaghan J, Toh BH, Murphy C, Zerial M, Stenmark H (1998) EEA1 links PI(3)K function to Rab5 regulation of endosome fusion. Nature 394: 494–498 · DOI · Paper page
  45. van der Sluijs P, Hoogenraad CC (2011) New insights in endosomal dynamics and AMPA receptor trafficking. Semin Cell Dev Biol 22: 499–505 · DOI
  46. Soykan T, Maritzen T, Haucke V (2016) Modes and mechanisms of synaptic vesicle recycling. Curr Opin Neurobiol 39: 17–23 · DOI
  47. Subramanian D, Laketa V, Muller R, Tischer C, Zarbakhsh S, Pepperkok R, Schultz C (2010) Activation of membrane‐permeant caged PtdIns(3)P induces endosomal fusion in cells. Nat Chem Biol 6: 324–326 · DOI
  48. Sudhof TC (2013) Neurotransmitter release: the last millisecond in the life of a synaptic vesicle. Neuron 80: 675–690 · DOI · Paper page
  49. Sudhof TC, Rothman JE (2009) Membrane fusion: grappling with SNARE and SM proteins. Science 323: 474–477 · DOI · Paper page
  50. Tan TC, Valova VA, Malladi CS, Graham ME, Berven LA, Jupp OJ, Hansra G, McClure SJ, Sarcevic B, Boadle RA et al (2003) Cdk5 is essential for synaptic vesicle endocytosis. Nat Cell Biol 5: 701–710 · DOI
  51. Turrigiano GG, Nelson SB (2004) Homeostatic plasticity in the developing nervous system. Nat Rev Neurosci 5: 97–107 · DOI · Paper page
  52. Uytterhoeven V, Kuenen S, Kasprowicz J, Miskiewicz K, Verstreken P (2011) Loss of skywalker reveals synaptic endosomes as sorting stations for synaptic vesicle proteins. Cell 145: 117–132 · DOI
  53. Wu H, Carvalho P, Voeltz GK (2018) Here, there, and everywhere: The importance of ER membrane contact sites. Science 361: eaan5835
  54. Wu Y, O'Toole ET, Girard M, Ritter B, Messa M, Liu X, McPherson PS, Ferguson SM, De Camilli P (2014) A dynamin 1‐, dynamin 3‐ and clathrin‐independent pathway of synaptic vesicle recycling mediated by bulk endocytosis. Elife 3: e01621
  55. Yamashita N, Kuruvilla R (2016) Neurotrophin signaling endosomes: biogenesis, regulation, and functions. Curr Opin Neurobiol 39: 139–145 · DOI
  56. Zhao C, Dreosti E, Lagnado L (2011) Homeostatic synaptic plasticity through changes in presynaptic calcium influx. J Neurosci 31: 7492–7496 · DOI
  57. Zhou X, Wang L, Hasegawa H, Amin P, Han BX, Kaneko S, He Y, Wang F (2010) Deletion of PIK3C3/Vps34 in sensory neurons causes rapid neurodegeneration by disrupting the endosomal but not the autophagic pathway. Proc Natl Acad Sci USA 107: 9424–9429 · DOI · Paper page

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Metadata

Authors
Liu, G., Kochlamazashvili, G., Puchkov, D., Müller, R., Schultz, C., Mackintosh, A. I., Vollweiter, D., Haucke, V., & Soykan, T.
Venue
The EMBO Journal
Published
2022-03-22
Volume
41
Issue
9
ISSN
  • 0261-4189
  • 1460-2075
Cited by
19
References
8
Language
en
Funders
Deutsche Forschungsgemeinschaft (HA2686/13‐1, TRR186/ A09, EXC‐2049)

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