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Methyl-CpG-Binding Domain Proteins: Readers of the Epigenome
Open accessAbstract
How DNA methylation is interpreted and influences genome regulation remains largely unknown. Proteins of the methyl-CpG-binding domain (MBD) family are primary candidates for the readout of DNA methylation as they recruit chromatin remodelers, histone deacetylases and methylases to methylated DNA associated with gene repression. MBD protein binding requires both functional MBD domains and methyl-CpGs; however, some MBD proteins also bind unmethylated DNA and active regulatory regions via alternative regulatory domains or interaction with the nucleosome remodeling deacetylase (NuRD/Mi-2) complex members. Mutations within MBD domains occur in many diseases, including neurological disorders and cancers, leading to loss of MBD binding specificity to methylated sites and gene deregulation. Here, we summarize the current state of knowledge about MBD proteins and their role as readers of the epigenome.
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“5mC readers including proteins containing a methyl-CpG-binding domain such as MECP2 or MBD proteins can recognize 5mC and recruit co-regulators to methylated DNA (25).”
From Dynamic DNA methylation: In the right place at the right time (2018) · cites this paper as [25]
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Metadata
- Authors
- Du, Q., Luu, P.-L., Stirzaker, C., & Clark, S. J.
- Affiliations
- Garvan Institute of Medical Research (AU)
- Venue
- Epigenomics
- Publisher
- Informa UK Limited
- Published
- 2015-04-30
- Volume
- 7
- Issue
- 6
- Pages
- 1051-1073
- ISSN
- 1750-1911 (ISSN-L)
- 1750-192X
- OpenAlex
- W2040875973
- Cited by
- 544
- References
- 191
- Citations by year
- 2026: 34 · 2025: 61 · 2024: 55 · 2023: 53 · 2022: 74 · 2021: 72 · 2020: 43 · 2019: 47 · 2018: 34 · 2017: 35 · 2016: 23 · 2015: 5
- FWCI
- 3.13
- Type
- journal article
- Language
- en
- Open access
- hybrid
- doi.org
- Licence
- Locations
- Epigenomics (publishedVersion, cc-by-nc-nd)
- PubMed (publishedVersion)
- Funders
- NHMRC Fellowship and NHMRC (1088144)
- Stirzaker and P-L Luu by NHMRC (1088144)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Epigenetics and DNA Methylation
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Genomics and Chromatin Dynamics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Cancer-related gene regulation
- Keywords
- methyl-CpG binding domain proteins, DNA methylation, epigenetic reader protein, chromatin remodeling, histone deacetylase, gene repression, neurological disorders, cancer, gene expression regulation
- MeSH terms
- Animals, Binding Sites, Cell Differentiation, DNA-Binding Proteins, Gene Expression Regulation, Multigene Family, Humans, Mutation, Neoplasms, Protein Binding, Down-Regulation, CpG Islands, DNA Methylation, Genetic Predisposition to Disease, Gene Silencing, Epigenesis, Genetic, Protein Interaction Domains and Motifs, Cellular Reprogramming
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
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