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Neuronal regulation of pre-mRNA splicing by polypyrimidine tract binding proteins, PTBP1 and PTBP2
Open accessAbstract
Alternative splicing patterns are regulated by RNA binding proteins that assemble onto each pre-mRNA to form a complex RNP structure. The polypyrimidine tract binding protein, PTB, has served as an informative model for understanding how RNA binding proteins affect spliceosome assembly and how changes in the expression of these proteins can control complex programs of splicing in tissues. In this review, we describe the mechanisms of splicing regulation by PTB and its function, along with its paralog PTBP2, in neuronal development.
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“Each PTBP contains four RNA recognition motif domains that together bind to extended CU-rich sequences13,14.”
From The neurogenetics of alternative splicing (2016) · cites this paper as [13]
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Chan, R. C., & Black, D. L. (1997) · Molecular and Cellular Biology · doi:10.1128/mcb.17.5.2970 · Cited by 111
Self-citationThe PTB interacting protein raver1 regulates α‐tropomyosin alternative splicing
Gromak, N., Rideau, A., Southby, J., Scadden, A. D. J., Gooding, C., Hüttelmaier, S., Singer, R. H., & Smith, C. W. J. (2003) · The EMBO Journal · doi:10.1093/emboj/cdg609 · Cited by 109
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Structure and RNA Interactions of the N-Terminal RRM Domains of PTB
Simpson, P. J., Monie, T. P., Szendröi, A., Davydova, N., Tyzack, J. K., Conte, M. R., Read, C. M., Cary, P. D., Svergun, D. I., Konarev, P. V., et al. (2004) · Structure · doi:10.1016/j.str.2004.07.008 · Cited by 100
A peptide motif in Raver1 mediates splicing repression by interaction with the PTB RRM2 domain
Rideau, A., Gooding, C., Simpson, P. J., Monie, T. P., Lorenz, M., Hüttelmaier, S., Singer, R. H., Matthews, S., Curry, S., & Smith, C. W. J. (2006) · Nature Structural & Molecular Biology · doi:10.1038/nsmb1137 · Cited by 100
U1 snRNA Directly Interacts with Polypyrimidine Tract-Binding Protein during Splicing Repression
Sharma, S., Maris, C., Allain, F. H. ‐., & Black, D. L. (2011) · Molecular Cell · doi:10.1016/j.molcel.2011.02.012 · Cited by 98
Self-citationStructure of the two most C‐terminal RNA recognition motifs of PTB using segmental isotope labeling
Vitali, F., Henning, A., Oberstrass, F. C., Hargous, Y., Auweter, S., Erat, M. C., & Allain, F. H. ‐. (2005) · The EMBO Journal · doi:10.1038/sj.emboj.7600911 · Cited by 96
Kafasla, P., Morgner, N., Pöyry, T. A. A., Curry, S., Robinson, C. V., & Jackson, R. J. (2009) · Molecular Cell · doi:10.1016/j.molcel.2009.04.015 · Cited by 94
Determination of functional domains in polypyrimidine-tract-binding protein
Oh, Y. L., Hahm, B., Kim, Y. K., Lee, H. K., Lee, J. W., Ok.-K., S. O. N. G., Tsukiyama–Kohara, K., Kohara, M., Nomoto, A., & Jang, S. K. (1998) · Biochemical Journal · doi:10.1042/bj3310169 · Cited by 90
Structure-function relationships of the polypyrimidine tract binding protein
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Tang, Z. Z., Sharma, S., Zheng, S., Chawla, G., Nikolic, J. M., & Black, D. L. (2011) · Journal of Biological Chemistry · doi:10.1074/jbc.m110.208116 · Cited by 83
Self-citationConserved Intron Elements Repress Splicing of a Neuron-Specific c- src Exon In Vitro
Chan, R. C., & Black, D. L. (1995) · Molecular and Cellular Biology · doi:10.1128/mcb.15.11.6377 · Cited by 83
Self-citationShibayama, M., Ohno, S., Osaka, T., Sakamoto, R., Tokunaga, A., Nakatake, Y., Sato, M., & Yoshida, N. (2009) · The FEBS Journal · doi:10.1111/j.1742-4658.2009.07380.x · Cited by 82
Delineation of a Novel Pathway That Regulates CD154 (CD40 Ligand) Expression
Hamilton, B. J., Genin, A., Cron, R. Q., & Rigby, W. F. C. (2002) · Molecular and Cellular Biology · doi:10.1128/mcb.23.2.510-525.2003 · Cited by 82
選択的スプライシングレプレッサーhnRNP A1/A2とPTBはピルビン酸キナーゼアイソフォーム発現と細胞代謝に影響する
Cynthia, V. C., Deblina, C., Zhenxun, W., Cantley, L. C., Matthew, G. V. H., & Adrian, R. (2010) · Cited by 82
Ohno, G., Hagiwara, M., & Kuroyanagi, H. (2008) · Genes & Development · doi:10.1101/gad.1620608 · Cited by 79
Global analysis of mRNA splicing
Moore, M. J., & Silver, P. A. (2007) · RNA · doi:10.1261/rna.868008 · Cited by 79
Gama‐Carvalho, M., Barbosa‐Morais, N. L., Brodsky, A. S., Silver, P. A., & Carmo‐Fonseca, M. (2006) · Genome biology · doi:10.1186/gb-2006-7-11-r113 · Cited by 79
Hall, M. P., Huang, S., & Black, D. L. (2003) · Molecular Biology of the Cell · doi:10.1091/mbc.e03-09-0692 · Cited by 76
Self-citationNucleocytoplasmic Shuttling of Polypyrimidine Tract-binding Protein Is Uncoupled from RNA Export
Kamath, R. V., Leary, D. J., & Huang, S. (2001) · Molecular Biology of the Cell · doi:10.1091/mbc.12.12.3808 · Cited by 75
Combinatorial control of a neuron-specific exon
Modafferi, E. F., & Black, D. L. (1999) · RNA · doi:10.1017/s1355838299990155 · Cited by 71
Self-citationPolypyrimidine tract-binding protein inhibits translation of bip mRNA
Kim, Y. K., Hahm, B., & Jang, S. K. (2000) · Journal of Molecular Biology · doi:10.1006/jmbi.2000.4179 · Cited by 68
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Conformation of Polypyrimidine Tract Binding Protein in Solution
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The polypyrimidine tract binding protein is a monomer
Monie, T. P., Hernández, H., Robinson, C. V., Simpson, P. J., Matthews, S., & Curry, S. (2005) · RNA · doi:10.1261/rna.2214405 · Cited by 57
Relocalization of the polypyrimidine tract-binding protein during PKA-induced neurite growth
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PTBP1 Is Required for Embryonic Development before Gastrulation
Suckale, J., Wendling, O., Masjkur, J., Jäger, M., Münster, C., Anastassiadis, K., Stewart, A. F., & Solimena, M. (2011) · PLoS ONE · doi:10.1371/journal.pone.0016992 · Cited by 55 · cited 1×
“PTB null mutations cause embryonic lethality in mouse, whereas conditional knockout specifically in the brain has minimal phenotype (Shibayama et al., 2009; Suckale et al., 2011; Sika Zheng and DLB, unpublished).”
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Polypyrimidine tract binding protein and Notch1 are independently re-expressed in glioma
Beird, H. C., Corley, L. J., Fuller, G. N., McCutcheon, I. E., & Cote, G. J. (2006) · Modern Pathology · doi:10.1038/modpathol.3800635 · Cited by 52
Xu, M., & Hecht, N. B. (2007) · Biology of Reproduction · doi:10.1095/biolreprod.107.060079 · Cited by 52
A Splicing Repressor Domain in Polypyrimidine Tract-binding Protein
Robinson, F., & Smith, C. W. J. (2005) · Journal of Biological Chemistry · doi:10.1074/jbc.m510578200 · Cited by 50
PTB/hnRNP I Is Required for RNP Remodeling during RNA Localization in Xenopus Oocytes
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Stoichiometry of a regulatory splicing complex revealed by single‐molecule analyses
Cherny, D., Gooding, C., Eperon, G. E., Coelho, M. B., Bagshaw, C. R., Smith, C. W. J., & Eperon, I. C. (2010) · The EMBO Journal · doi:10.1038/emboj.2010.103 · Cited by 48
A Novel Polypyrimidine Tract-binding Protein Paralog Expressed in Smooth Muscle Cells
Gooding, C., Kemp, P. R., & Smith, C. W. J. (2003) · Journal of Biological Chemistry · doi:10.1074/jbc.m210131200 · Cited by 48
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The Domains of Polypyrimidine Tract Binding Protein Have Distinct RNA Structural Preferences
Clerté, C., & Hall, K. B. (2009) · Biochemistry · doi:10.1021/bi8016872 · Cited by 44
Characterization of the Nuclear Export Signal of Polypyrimidine Tract-binding Protein
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Drosophila polypyrimidine‐tract binding protein (PTB) functions specifically in the male germline
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Characterization of multimeric complexes formed by the human PTB1 protein on RNA
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Pre‐mRNA splicing during transcription in the mammalian system
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Chemical shift mapping of RNA interactions with the polypyrimidine tract binding protein
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A Role for Polypyrimidine Tract Binding Protein in the Establishment of Focal Adhesions
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Self-citationExpression of Human nPTB Is Limited by Extreme Suboptimal Codon Content
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Vaquero-Garcia, J., Barrera, A., Gazzara, M. R., González-Vallinas, J., Lahens, N. F., Hogenesch, J. B., Lynch, K. W., & Barash, Y. (2016) · eLife · doi:10.7554/elife.11752 · Cited by 488
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Self-citation
Metadata
- Authors
- Keppetipola, N., Sharma, S., Li, Q., & Black, D. L.
- Affiliations
- University of California, Los Angeles (US)
- Howard Hughes Medical Institute (US)
- Corresponding author
- Black, Douglas L.
- Venue
- Critical Reviews in Biochemistry and Molecular Biology
- Publisher
- Informa UK Limited
- Published
- 2012-06-02
- Volume
- 47
- Issue
- 4
- Pages
- 360-378
- ISSN
- 0045-6411 (ISSN-L)
- 1040-9238
- 1549-7798
- PMC
- PMC3422667
- OpenAlex
- W2024593827
- Cited by
- 201
- References
- 165
- Citations by year
- 2026: 15 · 2025: 22 · 2024: 18 · 2023: 15 · 2022: 20 · 2021: 16 · 2020: 14 · 2018: 19 · 2017: 15 · 2016: 17 · 2015: 11 · 2014: 10 · 2013: 7 · 2012: 1
- FWCI
- 0.85
- Type
- journal article
- Language
- en
- Open access
- green
- www.ncbi.nlm.nih.gov
- Locations
- Critical Reviews in Biochemistry and Molecular Biology (publishedVersion)
- PubMed (publishedVersion)
- Europe PMC (PubMed Central) (acceptedVersion)
- PubMed Central (acceptedVersion)
- Funders
- Howard Hughes Medical Institute
- National Institutes of Health
- National Institute of General Medical Sciences (R01 GM 49662, R24GM070857, R01GM049662)
- National Institute of Neurological Disorders and Stroke (T32NS007449, 5T32 NS07449)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › RNA Research and Splicing
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › RNA regulation and disease
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › RNA and protein synthesis mechanisms
- Keywords
- pre-mRNA splicing, alternative splicing, polypyrimidine tract-binding protein, PTBP1, PTBP2, RNA-binding proteins, spliceosome assembly, protein-RNA complex, neuronal development
- MeSH terms
- Animals, Humans, RNA Precursors, RNA Splicing, RNA-Binding Proteins, Alternative Splicing, Polypyrimidine Tract-Binding Protein
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