The DOI matches its Crossref record; 7 of the 7 references it cites were found in a registry or an index.
CASCADE: A Custom-Made Archiving System for the Conservation of Ancient DNA Experimental Data
Overview
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Verification
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Claims other papers make about this one
Each is checked against this paper’s own text: does it say what the citing paper says it does?
The cited source says what the claim attributes to it.
In the citing paper
“This information is generally digitized in most, if not all, aDNA laboratories, and Laboratory Information Management Systems (LIMS) specifically developed for aDNA such as CASCADE 174 are becoming freely available.”
From Ancient DNA analysis (2021) · cites this paper as [174]
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
Citations
Cites
Genetic history of an archaic hominin group from Denisova Cave in Siberia
Reich, D., Green, R. E., Kircher, M., Krause, J., Patterson, N., Durand, E. Y., Viola, B., Briggs, A. W., Stenzel, U., Johnson, P. L. F., et al. (2010) · Nature · doi:10.1038/nature09710 · Cited by 1,991
Massive migration from the steppe was a source for Indo-European languages in Europe
Haak, W., Lazaridis, I., Patterson, N., Rohland, N., Mallick, S., Llamas, B., Brandt, G., Nordenfelt, S., Harney, E., Stewardson, K., et al. (2015) · Nature · doi:10.1038/nature14317 · Cited by 1,940
Dabney, J., Knapp, M., Glocke, I., Gansauge, M.-T., Weihmann, A., Nickel, B., Valdiosera, C., García, N., Pääbo, S., Arsuaga, J.-L., et al. (2013) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1314445110 · Cited by 1,443
Ancient human genome sequence of an extinct Palaeo-Eskimo
Rasmussen, M., Li, Y., Lindgreen, S., Pedersen, J. S., Albrechtsen, A., Moltke, I., Metspalu, M., Metspalu, E., Kivisild, T., Gupta, R., et al. (2010) · Nature · doi:10.1038/nature08835 · Cited by 849
Self-citationPartial uracil–DNA–glycosylase treatment for screening of ancient DNA
Rohland, N., Harney, E., Mallick, S., Nordenfelt, S., & Reich, D. (2015) · Philosophical Transactions of the Royal Society B: Biological Sciences · doi:10.1098/rstb.2013.0624 · Cited by 572
The genomic history of the Iberian Peninsula over the past 8000 years
Olalde, I., Mallick, S., Patterson, N., Rohland, N., Villalba-Mouco, V., Silva, M., Dulias, K., Edwards, C. J., Gandini, F., Pala, M., et al. (2019) · Science · doi:10.1126/science.aav4040 · Cited by 552
Harney, É., May, H., Shalem, D., Rohland, N., Mallick, S., Lazaridis, I., Sarig, R., Stewardson, K., Nordenfelt, S., Patterson, N., et al. (2018) · Nature Communications · doi:10.1038/s41467-018-05649-9 · Cited by 136
Flagged first, then by citations
Research works printed but not linked: 30
- Boessenkool, 2017, Combining bleach and mild predigestion improves ancient DNA recovery from bones., Mol. Ecol. Res., 17, 742, 10.1111/1755-0998.12623 · DOI · Paper page
- Briggs, 2007, Patterns of damage in genomic DNA sequences from a Neandertal., PNAS, 104, 14616, 10.1073/pnas.0704665104 · DOI · Paper page
- Brunson, 2019, The promise of paleogenomics beyond our own species., Trends Genet., 35, 319, 10.1016/j.tig.2019.02.006 · DOI
- Carøe, 2018, Single-tube library preparation for degraded DNA., Methods Ecol. Evol., 2, 410, 10.1111/2041-210X.12871 · DOI
- Codd, 1970, A relational model of data for large shared data banks., Commun. ACM, 13, 377, 10.1145/362384.362685 · DOI · Paper page
- Damgaard, 2018, 137 ancient human genomes from across the Eurasian steppes., Nature, 557, 369, 10.1038/s41586-018-0094-2 · DOI
- Damgaard, 2015, Improving access to endogenous DNA in ancient bones and teeth., Sci. Rep., 5, 10.1038/srep11184 · DOI · Paper page
- Date, 2003, An Introduction to Database Systems
- Fages, 2019, Tracking five millennia of horse management with extensive ancient genome time series., Cell, 177, 1419, 10.1016/j.cell.2019.03.049 · DOI · Paper page
- Gansauge, 2017, Single-stranded DNA library preparation from highly degraded DNA using T4 DNA ligase., Nucleic Acids Res., 45, 10.1093/nar/gkx033 · DOI
- Gansauge, 2013, Single-stranded DNA library preparation for the sequencing of ancient or damaged DNA., Nat. Protoc., 8, 737, 10.1038/nprot.2013.038 · DOI · Paper page
- Gansauge, 2014, Selective enrichment of damaged DNA molecules for ancient genome sequencing., Genome Res., 24, 1543, 10.1101/gr.174201.114 · DOI · Paper page
- Glocke, 2017, Extending the spectrum of DNA sequences retrieved from ancient bones and teeth., Genome Res., 27, 1230, 10.1101/gr.219675.116 · DOI
- Goodwin, 2016, Coming of age: ten years of next-generation sequencing technologies., Nat. Rev. Genet., 17, 333, 10.1038/nrg.2016.49 · DOI · Paper page
- Green, 2010, A Draft Sequence of the Neandertal Genome., Science, 5979, 710, 10.1126/science.1188021 · DOI · Paper page
- Kistler, 2018, Multiproxy evidence highlights a complex evolutionary legacy of maize in South America., Science, 362, 1309, 10.1126/science.aav0207 · DOI
- Korlević, 2019, Pretreatment: removing DNA contamination from ancient bones and teeth using sodium hypochlorite and phosphate., Methods Mol. Biol., 1963, 15, 10.1007/978-1-4939-9176-1_2 · DOI
- Lander, 2001, Initial sequencing and analysis of the human genome., Nature, 409, 860, 10.1038/35057062 · DOI · Paper page
- Mann, 2018, Differential preservation of endogenous human and microbial DNA in dental calculus and dentin., Sci. Rep., 8, 10.1038/s41598-018-28091-9 · DOI
- Marciniak, 2017, Harnessing ancient genomes to study the history of human adaptation., Nat. Rev. Genet., 18, 659, 10.1038/nrg.2017.65 · DOI
- Mathieson, 2018, The genomic history of southeastern Europe., Nature, 555, 197, 10.1038/nature25778 · DOI
- Metzker, 2010, Sequencing technologies – the next generation., Nat. Rev. Genet., 11, 31, 10.1038/nrg2626 · DOI · Paper page
- Olalde, 2018, The Beaker phenomenon and the genomic transformation of northwest Europe., Nature, 555, 190, 10.1038/nature25738 · DOI · Paper page
- Pedersen, 2015, Ancient and modern environmental DNA., Philos. Trans. R. Soc. Lond. B Biol. Sci., 370, 10.1098/rstb.2013.0383 · DOI · Paper page
- Pinhasi, 2015, Optimal Ancient DNA yields from the inner ear part of the human petrous bone., PLoS One, 10, 10.1371/journal.pone.0129102 · DOI · Paper page
- Regalado, 2019, More Than 26 Million People Have Taken an at-Home Ancestry Test. MIT Technology Review.
- Rohland, 2018, Extraction of highly degraded DNA from ancient bones, teeth and sediments for high-throughput sequencing., Nat. protoc., 13, 2447, 10.1038/s41596-018-0050-5 · DOI
- Schubert, 2014, Characterization of ancient and modern genomes by SNP detection and phylogenomic and metagenomic analysis using PALEOMIX., Nat. protoc., 9, 10.1038/nprot.2014.063 · DOI · Paper page
- Spyrou, 2019, Ancient pathogen genomics as an emerging tool for infectious disease research., Nat. Rev. Genet., 20, 323, 10.1038/s41576-019-0119-1 · DOI · Paper page
- Venter, 2001, The sequence of the human genome., Science, 291, 1304, 10.1126/science.1058040 · DOI · Paper page
Cited by
Sorted by citations
Orlando, L., Allaby, R., Skoglund, P., Der Sarkissian, C., Stockhammer, P. W., Ávila-Arcos, M. C., Fu, Q., Krause, J., Willerslev, E., Stone, A. C., et al. (2021) · Nature Reviews Methods Primers · doi:10.1038/s43586-020-00011-0 · Cited by 411
Self-citation
Metadata
- Authors
- Dolle, D., Fages, A., Mata, X., Schiavinato, S., Tonasso-Calvière, L., Chauvey, L., Wagner, S., Der Sarkissian, C., Fromentier, A., Seguin-Orlando, A., & Orlando, L.
- Venue
- Frontiers in Ecology and Evolution
- Publisher
- Frontiers Media SA
- Published
- 2020-06-23
- Volume
- 8
- ISSN
- 2296-701X
- Cited by
- 8
- References
- 7
- Funders
- European Research Council
- H2020 Marie Skłodowska-Curie Actions
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review