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Ancient pathogen genomics as an emerging tool for infectious disease research
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“No area of aDNA analysis, except that of microbial archaeology 13 , has benefited as much from NGS as that of past human population genetics (FIG.5).”
From Ancient DNA analysis (2021) · cites this paper as [13]
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“More recently, NGSbased methods have resulted in the successful recovery of authenticated pathogen genomes from not only Mycobacterium tuberculosis and Mycobacterium leprae, but also many pathogens that leave no visible evidence in the skeleton, such as Yersinia pestis, Helicobacter pylori, Vibrio cholera, Salmonella enterica Paratyphi C, Variola virus, human parvovirus, and hepatitis B virus (see”
From Ancient DNA analysis (2021) · cites this paper as [13]
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BEAST 2: a software platform for Bayesian evolutionary analysis
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Relaxed Phylogenetics and Dating with Confidence
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O'Leary, N. A., Wright, M. W., Brister, J. R., Ciufo, S., Haddad, D., McVeigh, R., Rajput, B., Robbertse, B., Smith-White, B., Ako-Adjei, D., et al. (2016) · Nucleic Acids Research · doi:10.1093/nar/gkv1189 · Cited by 6,357
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The complete genome sequence of a Neanderthal from the Altai Mountains
Prüfer, K., Racimo, F., Patterson, N., Jay, F., Sankararaman, S., Sawyer, S., Heinze, A., Renaud, G., Sudmant, P. H., de Filippo, C., et al. (2014) · Nature · doi:10.1038/nature12886 · Cited by 2,254
A high-coverage genome sequence from an archaic denisovan individual
Meyer, M., Kircher, M., Gansauge, M.-T., Li, H., Racimo, F., Mallick, S., Schraiber, J. G., Jay, F., Prüfer, K., de Filippo, C., et al. (2012) · Science · doi:10.1126/science.1224344 · Cited by 1,967
Massive migration from the steppe was a source for Indo-European languages in Europe
Haak, W., Lazaridis, I., Patterson, N., Rohland, N., Mallick, S., Llamas, B., Brandt, G., Nordenfelt, S., Harney, E., Stewardson, K., et al. (2015) · Nature · doi:10.1038/nature14317 · Cited by 1,940
Self-citationMetagenomic microbial community profiling using unique clade-specific marker genes
Segata, N., Waldron, L., Ballarini, A., Narasimhan, V., Jousson, O., & Huttenhower, C. (2012) · Nature Methods · doi:10.1038/nmeth.2066 · Cited by 1,776
mapDamage2.0: fast approximate Bayesian estimates of ancient DNA damage parameters
Jónsson, H., Ginolhac, A., Schubert, M., Johnson, P. L. F., & Orlando, L. (2013) · Bioinformatics · doi:10.1093/bioinformatics/btt193 · Cited by 1,669
Population genomics of Bronze Age Eurasia
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Metadata
- Authors
- Spyrou, M. A., Bos, K. I., Herbig, A., & Krause, J.
- Venue
- Nature Reviews Genetics
- Published
- 2019-04-05
- Volume
- 20
- Issue
- 6
- Pages
- 323-340
- ISSN
- 1471-0056
- 1471-0064
- PMC
- PMC7097038
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