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Retromer subunit, VPS29, regulates synaptic transmission and is required for endolysosomal function in the aging brain

Ye, Hui, Ojelade, Shamsideen A, Li-Kroeger, David, Zuo, Zhongyuan, Wang, Liping, Li, Yarong, Gu, Jessica YJ, Tepass, Ulrich, Rodal, Avital Adah, Bellen, Hugo J, Shulman, Joshua M·2020·eLife

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Abstract

Retromer, including Vps35, Vps26, and Vps29, is a protein complex responsible for recycling proteins within the endolysosomal pathway. Although implicated in both Parkinson’s and Alzheimer’s disease, our understanding of retromer function in the adult brain remains limited, in part because Vps35 and Vps26 are essential for development. In Drosophila, we find that Vps29 is dispensable for embryogenesis but required for retromer function in aging adults, including for synaptic transmission, survival, and locomotion. Unexpectedly, in Vps29 mutants, Vps35 and Vps26 proteins are normally expressed and associated, but retromer is mislocalized from neuropil to soma with the Rab7 GTPase. Further, Vps29 phenotypes are suppressed by reducing Rab7 or overexpressing the GTPase activating protein, TBC1D5. With aging, retromer insufficiency triggers progressive endolysosomal dysfunction, with ultrastructural evidence of impaired substrate clearance and lysosomal stress. Our results reveal the role of Vps29 in retromer localization and function, highlighting requirements for brain homeostasis in aging.

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  1. Appel, 2018, Increased microglial activity, impaired adult hippocampal neurogenesis, and Depressive-like behavior in microglial VPS35-Depleted mice, The Journal of Neuroscience, 38, 5949, 10.1523/JNEUROSCI.3621-17.2018 · DOI
  2. Babcock, 2003, A genetic screen for synaptic transmission mutants mapping to the right arm of chromosome 3 inDrosophila, Genetics, 165, 171, 10.1093/genetics/165.1.171 · DOI
  3. Bellen, 2010, 100 years of Drosophila research and its impact on vertebrate neuroscience: a history lesson for the future, Nature Reviews Neuroscience, 11, 514, 10.1038/nrn2839 · DOI
  4. Castillo-Quan, 2016, Lithium promotes longevity through GSK3/NRF2-Dependent hormesis, Cell Reports, 15, 638, 10.1016/j.celrep.2016.03.041 · DOI
  5. Caussinus, 2012, Fluorescent fusion protein knockout mediated by anti-GFP nanobody, Nature Structural & Molecular Biology, 19, 117, 10.1038/nsmb.2180 · DOI · Paper page
  6. Cherry, 2013, Charcot-Marie-Tooth 2B mutations in rab7 cause dosage-dependent neurodegeneration due to partial loss of function, eLife, 2, 10.7554/eLife.01064 · DOI
  7. Chouhan, 2016, Uncoupling neuronal death and dysfunction in Drosophila models of neurodegenerative disease, Acta Neuropathologica Communications, 4, 10.1186/s40478-016-0333-4 · DOI
  8. Choy, 2014, Retromer mediates a discrete route of local membrane delivery to dendrites, Neuron, 82, 55, 10.1016/j.neuron.2014.02.018 · DOI · Paper page
  9. Collins, 2005, Vps29 has a phosphoesterase fold that acts as a protein interaction scaffold for retromer assembly, Nature Structural & Molecular Biology, 12, 594, 10.1038/nsmb954 · DOI
  10. Cui, 2019, Retromer has a selective function in cargo sorting via endosome transport carriers, Journal of Cell Biology, 218, 615, 10.1083/jcb.201806153 · DOI · Paper page
  11. Cullen, 2018, To degrade or not to degrade: mechanisms and significance of endocytic recycling, Nature Reviews Molecular Cell Biology, 19, 679, 10.1038/s41580-018-0053-7 · DOI · Paper page
  12. Davis, 2016, Glucocerebrosidase deficiency in Drosophila results in α-Synuclein-Independent protein aggregation and neurodegeneration, PLOS Genetics, 12, 10.1371/journal.pgen.1005944 · DOI
  13. de Vreede, 2014, The scribble module regulates retromer-dependent endocytic trafficking during epithelial polarization, Development, 141, 2796, 10.1242/dev.105403 · DOI · Paper page
  14. Fernandes, 2014, Reduced synaptic vesicle protein degradation at Lysosomes curbs TBC1D24/sky-induced neurodegeneration, Journal of Cell Biology, 207, 453, 10.1083/jcb.201406026 · DOI
  15. Follett, 2016, Parkinson Disease-linked Vps35 R524W mutation impairs the endosomal association of retromer and induces α-Synuclein aggregation, Journal of Biological Chemistry, 291, 18283, 10.1074/jbc.M115.703157 · DOI · Paper page
  16. Franch-Marro, 2008, Wingless secretion requires endosome-to-Golgi retrieval of wntless/Evi/Sprinter by the retromer complex, Nature Cell Biology, 10, 170, 10.1038/ncb1678 · DOI
  17. Fuse, 2015, VPS29-VPS35 intermediate of retromer is stable and may be involved in the retromer complex assembly process, FEBS Letters, 589, 1430, 10.1016/j.febslet.2015.04.040 · DOI
  18. García-Sanz, 2018, Cholesterol and multilamellar bodies: lysosomal dysfunction in GBA-Parkinson disease, Autophagy, 14, 717, 10.1080/15548627.2018.1427396 · DOI
  19. Giasson, 2002, Neuronal alpha-synucleinopathy with severe movement disorder in mice expressing A53T human alpha-synuclein, Neuron, 34, 521, 10.1016/S0896-6273(02)00682-7 · DOI · Paper page
  20. Gramates, 2017, FlyBase at 25: looking to the future, Nucleic Acids Research, 45, D663, 10.1093/nar/gkw1016 · DOI
  21. Harris, 2015, Transmission, development, and plasticity of synapses, Genetics, 201, 345, 10.1534/genetics.115.176529 · DOI
  22. Hasanagic, 2015, The lysosomal enzyme receptor protein (LERP) is not essential, but is implicated in lysosomal function in Drosophila melanogaster, Biology Open, 4, 1316, 10.1242/bio.013334 · DOI
  23. Hierro, 2007, Functional architecture of the retromer cargo-recognition complex, Nature, 449, 1063, 10.1038/nature06216 · DOI · Paper page
  24. Inoshita, 2017, Vps35 in cooperation with LRRK2 regulates synaptic vesicle endocytosis through the endosomal pathway in Drosophila, Human Molecular Genetics, 26, 2933, 10.1093/hmg/ddx179 · DOI · Paper page
  25. Jia, 2016, Structural and mechanistic insights into regulation of the retromer coat by TBC1d5, Nature Communications, 7, 10.1038/ncomms13305 · DOI · Paper page
  26. Jimenez-Orgaz, 2018, Control of RAB7 activity and localization through the retromer-TBC1D5 complex enables RAB7-dependent mitophagy, The EMBO Journal, 37, 235, 10.15252/embj.201797128 · DOI · Paper page
  27. Jin, 2018, Live observation of two parallel membrane degradation pathways at axon terminals, Current Biology, 28, 1027, 10.1016/j.cub.2018.02.032 · DOI
  28. Jongsma, 2020, SKIP-HOPS recruits TBC1D15 for a Rab7-to-Arl8b identity switch to control late endosome transport, The EMBO Journal, 39, 10.15252/embj.2019102301 · DOI
  29. Karch, 2014, Alzheimer's disease genetics: from the bench to the clinic, Neuron, 83, 11, 10.1016/j.neuron.2014.05.041 · DOI · Paper page
  30. Klumperman, 2014, The complex ultrastructure of the endolysosomal system, Cold Spring Harbor Perspectives in Biology, 6, 10.1101/cshperspect.a016857 · DOI
  31. Koles, 2016, Tissue-specific tagging of endogenous loci in Drosophila melanogaster, Biology Open, 5, 83, 10.1242/bio.016089 · DOI
  32. Korolchuk, 2007, Drosophila Vps35 function is necessary for normal endocytic trafficking and actin cytoskeleton organisation, Journal of Cell Science, 120, 4367, 10.1242/jcs.012336 · DOI · Paper page
  33. Koumandou, 2011, Evolutionary reconstruction of the retromer complex and its function in Trypanosoma brucei, Journal of Cell Science, 124, 1496, 10.1242/jcs.081596 · DOI · Paper page
  34. Kovtun, 2018, Structure of the membrane-assembled retromer coat determined by cryo-electron tomography, Nature, 561, 561, 10.1038/s41586-018-0526-z · DOI · Paper page
  35. Li, 2017, Spermine synthase deficiency causes lysosomal dysfunction and oxidative stress in models of Snyder-Robinson syndrome, Nature Communications, 8, 10.1038/s41467-017-01289-7 · DOI
  36. Li-Kroeger, 2018, An expanded toolkit for gene tagging based on MiMIC and scarless CRISPR tagging in Drosophila, eLife, 7, 10.7554/eLife.38709 · DOI
  37. Lin, 2018, Phospholipase PLA2G6, a Parkinsonism-Associated gene, affects Vps26 and Vps35, retromer function, and ceramide levels, similar to α-Synuclein gain, Cell Metabolism, 28, 605, 10.1016/j.cmet.2018.05.019 · DOI
  38. Linhart, 2014, Vacuolar protein sorting 35 (Vps35) rescues locomotor deficits and shortened lifespan in Drosophila expressing a parkinson's disease mutant of Leucine-Rich Repeat Kinase 2 (LRRK2), Molecular Neurodegeneration, 9, 10.1186/1750-1326-9-23 · DOI
  39. Liu, 2012, Rab GTPase regulation of retromer-mediated cargo export during endosome maturation, Molecular Biology of the Cell, 23, 2505, 10.1091/mbc.e11-11-0915 · DOI
  40. Liu, 2014, Vps35 haploinsufficiency results in degenerative-like deficit in mouse retinal ganglion neurons and impairment of optic nerve injury-induced gliosis, Molecular Brain, 7, 10.1186/1756-6606-7-10 · DOI
  41. Lorenowicz, 2014, Inhibition of late endosomal maturation restores wnt secretion in Caenorhabditis elegans vps-29 retromer mutants, Cellular Signalling, 26, 19, 10.1016/j.cellsig.2013.09.013 · DOI
  42. Lucas, 2016, Structural mechanism for cargo recognition by the retromer complex, Cell, 167, 1623, 10.1016/j.cell.2016.10.056 · DOI · Paper page
  43. Lucas, 2017, Retromer, Current Biology, 27, R687, 10.1016/j.cub.2017.05.072 · DOI
  44. Lund, 2018, Drosophila Rab2 controls endosome-lysosome fusion and LAMP delivery to late endosomes, Autophagy, 14, 1520, 10.1080/15548627.2018.1458170 · DOI
  45. Malik, 2015, VPS35 pathogenic mutations confer no dominant toxicity but partial loss of function in Drosophila and genetically interact with parkin, Human Molecular Genetics, 24, 6106, 10.1093/hmg/ddv322 · DOI
  46. Martin, 1955, A further study of the statistical composition on the end-plate potential, The Journal of Physiology, 130, 114, 10.1113/jphysiol.1955.sp005397 · DOI
  47. Maruzs, 2015, Retromer ensures the degradation of autophagic cargo by maintaining lysosome function in Drosophila, Traffic, 16, 1088, 10.1111/tra.12309 · DOI
  48. Marwaha, 2017, The Rab7 effector PLEKHM1 binds Arl8b to promote cargo traffic to lysosomes, Journal of Cell Biology, 216, 1051, 10.1083/jcb.201607085 · DOI
  49. Mattson, 2006, Ageing and neuronal vulnerability, Nature Reviews Neuroscience, 7, 278, 10.1038/nrn1886 · DOI · Paper page
  50. Mecozzi, 2014, Pharmacological chaperones stabilize retromer to limit APP processing, Nature Chemical Biology, 10, 443, 10.1038/nchembio.1508 · DOI · Paper page
  51. Mehta, 2005, Mutations in Drosophila sec15 reveal a function in neuronal targeting for a subset of exocyst components, Neuron, 46, 219, 10.1016/j.neuron.2005.02.029 · DOI · Paper page
  52. Mitter, 2003, The synaptophysin/synaptobrevin interaction critically depends on the cholesterol content, Journal of Neurochemistry, 84, 35, 10.1046/j.1471-4159.2003.01258.x · DOI
  53. Munsie, 2015, Retromer-dependent neurotransmitter receptor trafficking to synapses is altered by the parkinson's disease VPS35 mutation p.D620N, Human Molecular Genetics, 24, 1691, 10.1093/hmg/ddu582 · DOI · Paper page
  54. Nagarkar-Jaiswal, 2015, A library of MiMICs allows tagging of genes and reversible, spatial and temporal knockdown of proteins in Drosophila, eLife, 4, 10.7554/eLife.05338 · DOI
  55. Newsome, 2000, Analysis ofDrosophilaphotoreceptor axon guidance in eye-specific mosaics, Development, 127, 851, 10.1242/dev.127.4.851 · DOI
  56. Ohara, 2004, Axonal dystrophy of dorsal root ganglion sensory neurons in a mouse model of Niemann-Pick disease type C, Experimental Neurology, 187, 289, 10.1016/j.expneurol.2004.03.002 · DOI
  57. Piras, 2016, Autophagic and lysosomal defects in human tauopathies: analysis of post-mortem brain from patients with familial alzheimer disease, corticobasal degeneration and progressive supranuclear palsy, Acta Neuropathologica Communications, 4, 10.1186/s40478-016-0292-9 · DOI · Paper page
  58. Pocha, 2011, Retromer controls epithelial cell polarity by trafficking the apical determinant crumbs, Current Biology, 21, 1111, 10.1016/j.cub.2011.05.007 · DOI
  59. Reddy, 2001, Vps26p, a component of retromer, directs the interactions of Vps35p in endosome-to-Golgi retrieval, Molecular Biology of the Cell, 12, 3242, 10.1091/mbc.12.10.3242 · DOI
  60. Repnik, 2013, The endolysosomal system in cell death and survival, Cold Spring Harbor Perspectives in Biology, 5, 10.1101/cshperspect.a008755 · DOI
  61. Rosa-Ferreira, 2018, The small G protein Arl8 contributes to lysosomal function and long-range axonal transport in Drosophila, Biology Open, 7, 10.1242/bio.035964 · DOI
  62. Sambri, 2017, Lysosomal dysfunction disrupts presynaptic maintenance and restoration of presynaptic function prevents neurodegeneration in lysosomal storage diseases, EMBO Molecular Medicine, 9, 112, 10.15252/emmm.201606965 · DOI
  63. Seaman, 1997, Endosome to golgi retrieval of the vacuolar protein sorting receptor, Vps10p, requires the function of the VPS29, VPS30, and VPS35 gene products, Journal of Cell Biology, 137, 79, 10.1083/jcb.137.1.79 · DOI · Paper page
  64. Seaman, 1998, A membrane coat complex essential for endosome-to-Golgi retrograde transport in yeast, Journal of Cell Biology, 142, 665, 10.1083/jcb.142.3.665 · DOI · Paper page
  65. Seaman, 2009, Membrane recruitment of the cargo-selective retromer subcomplex is catalysed by the small GTPase Rab7 and inhibited by the Rab-GAP TBC1D5, Journal of Cell Science, 122, 2371, 10.1242/jcs.048686 · DOI · Paper page
  66. Small, 2015, Retromer in alzheimer disease, parkinson disease and other neurological disorders, Nature Reviews Neuroscience, 16, 126, 10.1038/nrn3896 · DOI · Paper page
  67. Soukup, 2018, Parkinson's disease: convergence on synaptic homeostasis, The EMBO Journal, 37, 10.15252/embj.201898960 · DOI
  68. Starble, 2018, The retromer subunit Vps26 mediates notch signaling during Drosophila oogenesis, Mechanisms of Development, 149, 1, 10.1016/j.mod.2017.10.001 · DOI
  69. Stokin, 2005, Axonopathy and transport deficits early in the pathogenesis of Alzheimer's disease, Science, 307, 1282, 10.1126/science.1105681 · DOI · Paper page
  70. Strutt, 2019, Retromer controls planar polarity protein levels and asymmetric localization at intercellular junctions, Current Biology, 29, 484, 10.1016/j.cub.2018.12.027 · DOI
  71. Sweeney, 2002, Unrestricted synaptic growth in spinster-a late endosomal protein implicated in TGF-beta-mediated synaptic growth regulation, Neuron, 36, 403, 10.1016/S0896-6273(02)01014-0 · DOI
  72. Tang, 2015, VPS35 deficiency or mutation causes dopaminergic neuronal loss by impairing mitochondrial fusion and function, Cell Reports, 12, 1631, 10.1016/j.celrep.2015.08.001 · DOI
  73. Temkin, 2017, The retromer supports AMPA receptor trafficking during LTP, Neuron, 94, 74, 10.1016/j.neuron.2017.03.020 · DOI · Paper page
  74. Tian, 2015, VPS35-deficiency results in an impaired AMPA receptor trafficking and decreased dendritic spine maturation, Molecular Brain, 8, 10.1186/s13041-015-0156-4 · DOI · Paper page
  75. Tsika, 2014, Parkinson's disease-linked mutations in VPS35 induce dopaminergic neurodegeneration, Human Molecular Genetics, 23, 4621, 10.1093/hmg/ddu178 · DOI · Paper page
  76. Uytterhoeven, 2011, Loss of Skywalker reveals synaptic endosomes as sorting stations for synaptic vesicle proteins, Cell, 145, 117, 10.1016/j.cell.2011.02.039 · DOI
  77. Vagnozzi, 2019, VPS35 regulates tau phosphorylation and neuropathology in tauopathy, Molecular Psychiatry, 34, 10.1038/s41380-019-0453-x · DOI · Paper page
  78. Vazquez-Sanchez, 2018, VPS35 depletion does not impair presynaptic structure and function, Scientific Reports, 8, 10.1038/s41598-018-20448-4 · DOI
  79. Venken, 2009, Versatile P[acman] BAC libraries for transgenesis studies in Drosophila melanogaster, Nature Methods, 6, 431, 10.1038/nmeth.1331 · DOI
  80. Verstreken, 2002, Endophilin mutations block clathrin-mediated endocytosis but not neurotransmitter release, Cell, 109, 101, 10.1016/S0092-8674(02)00688-8 · DOI
  81. Verstreken, 2008, FM 1-43 labeling of synaptic vesicle pools at the Drosophila neuromuscular junction, Methods in Molecular Biology, 440, 349, 10.1007/978-1-59745-178-9_26 · DOI
  82. Vilariño-Güell, 2011, VPS35 mutations in parkinson disease, The American Journal of Human Genetics, 89, 162, 10.1016/j.ajhg.2011.06.001 · DOI · Paper page
  83. Walsh, 2019, Opposing functions for retromer and Rab11 in extracellular vesicle cargo traffic at synapses, 10.1101/645713 · DOI
  84. Wang, 2014, The retromer complex is required for rhodopsin recycling and its loss leads to photoreceptor degeneration, PLOS Biology, 12, 10.1371/journal.pbio.1001847 · DOI
  85. Wang, 2017, Presynaptic protein homeostasis and neuronal function, Current Opinion in Genetics & Development, 44, 38, 10.1016/j.gde.2017.01.015 · DOI
  86. Wang, 2015, The retromer complex in development and disease, Development, 142, 2392, 10.1242/dev.123737 · DOI
  87. Winther, 2013, The dynamin-binding domains of Dap160/intersectin affect bulk membrane retrieval in synapses, Journal of Cell Science, 126, 1021, 10.1242/jcs.118968 · DOI
  88. Wu, 2017, The dopamine transporter recycles via a Retromer-Dependent postendocytic mechanism: tracking studies using a novel Fluorophore-Coupling approach, The Journal of Neuroscience, 37, 9438, 10.1523/JNEUROSCI.3885-16.2017 · DOI
  89. Young, 2018, Stabilizing the retromer complex in a human stem cell model of Alzheimer's Disease Reduces TAU Phosphorylation Independently of Amyloid Precursor Protein, Stem Cell Reports, 10, 1046, 10.1016/j.stemcr.2018.01.031 · DOI · Paper page
  90. Ysselstein, 2019, Emerging links between pediatric lysosomal storage diseases and adult parkinsonism, Movement Disorders, 34, 614, 10.1002/mds.27631 · DOI
  91. Zavodszky, 2014, Mutation in VPS35 associated with Parkinson's disease impairs WASH complex association and inhibits autophagy, Nature Communications, 5, 10.1038/ncomms4828 · DOI · Paper page
  92. Zimprich, 2011, A mutation in VPS35, encoding a subunit of the retromer complex, causes late-onset parkinson disease, The American Journal of Human Genetics, 89, 168, 10.1016/j.ajhg.2011.06.008 · DOI · Paper page

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Authors
Ye, H., Ojelade, S. A., Li-Kroeger, D., Zuo, Z., Wang, L., Li, Y., Gu, J. Y., Tepass, U., Rodal, A. A., Bellen, H. J., & Shulman, J. M.
Affiliations
  • Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, United States
  • Department of Neurology, Baylor College of Medicine, Houston, United States
  • Program in Developmental Biology, Baylor College of Medicine, Houston, United States
  • Department of Cell and Systems Biology, University of Toronto, Ontario, Canada
  • Department of Biology, Brandeis University, Waltham, United States
Venue
eLife
Published
2020-04-14
Volume
9
ISSN
2050-084X
Cited by
51
References
11
Language
en
Funders
  • National Institutes of Health (R01AG053960, U01AG046161, U01AG061357, U54AG065187, R01NS103967, U54HD083092, P30CA125123)
  • Burroughs Wellcome Fund (Career Award for Medical Scientists, Postdoctoral Enrichment Program Award (BWF-1017399))
  • Howard Hughes Medical Institute
  • Robert and Renee Belfer Family Foundation
  • Alzheimer's Association (AARFD-16-442630)

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