Connecting threads: epigenetics and metabolism
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Chromatin-modifying enzymes have long been proposed to be the authors of an epigenetic language, but the origin and meaning of the messages they write in chromatin are still mysterious. Recent studies suggesting that the effects of diet can be passed on epigenetically to offspring add weight to the idea that histones act as metabolic sensors, converting changes in metabolism into stable patterns of gene expression. The challenge will now be to understand how localized fluctuations in levels of metabolites control chromatin modifiers in space and time, translating a dynamic metabolic state into a histone map.
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Metabolic networks are not merely passive recipients of growth signals but directly transmit information about cellular metabolic state to regulatory enzymes including those mediating epigenetic marks.
“However, metabolic networks themselves are not merely passive recipients of growth signals, but quite the contrary, directly transmit the information about the cellular metabolic state to a diverse array of regulatory enzymes, among which are those that mediate the deposition and removal of epigenetic marks from chromatin (Katada et al., 2012)(Figure 6).”
From The emerging hallmarks of cancer metabolism (2016) · cites this paper as Katada et al., 2012
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1 retracted
GlcNAcylation of a histone methyltransferase in retinoic-acid-induced granulopoiesis
Fujiki, R., Chikanishi, T., Hashiba, W., Ito, H., Takada, I., Roeder, R. G., Kitagawa, H., & Kato, S. (2009) · Nature · doi:10.1038/nature07954 · Cited by 168 · see citing works
RetractedLysine acetylation targets protein complexes and co-regulates major cellular functions
Choudhary, C., Kumar, C., Gnad, F., Nielsen, M. L., Rehman, M., Walther, T. C., Olsen, J. V., & Mann, M. (2009) · Science · doi:10.1126/science.1175371 · Cited by 4,040 · see citing works
Xu, W., Yang, H., Liu, Y., Yang, Y., Wang, P., Kim, S.-H., Ito, S., Yang, C., Wang, P., Xiao, M.-T., et al. (2011) · Cancer Cell · doi:10.1016/j.ccr.2010.12.014 · Cited by 2,875 · see citing works
ATP-citrate lyase links cellular metabolism to histone acetylation
Wellen, K. E., Hatzivassiliou, G., Sachdeva, U. M., Bui, T. V., Cross, J. R., & Thompson, C. B. (2009) · Science · doi:10.1126/science.1164097 · Cited by 2,298 · see citing works
Substrate and Functional Diversity of Lysine Acetylation Revealed by a Proteomics Survey
Kim, S. C., Sprung, R., Chen, Y., Xu, Y., Ball, H., Pei, J., Cheng, T., Kho, Y., Xiao, H., Xiao, L., et al. (2006) · Molecular Cell · doi:10.1016/j.molcel.2006.06.026 · Cited by 1,487 · see citing works
Nakahata, Y., Kaluzova, M., Grimaldi, B., Sahar, S., Hirayama, J., Chen, D., Guarente, L. P., & Sassone-Corsi, P. (2008) · Cell · doi:10.1016/j.cell.2008.07.002 · Cited by 1,427 · see citing works
Self-citationCircadian Control of the NAD <sup>+</sup> Salvage Pathway by CLOCK-SIRT1
Nakahata, Y., Sahar, S., Astarita, G., Kaluzova, M., & Sassone-Corsi, P. (2009) · Science · doi:10.1126/science.1170803 · Cited by 1,198 · see citing works
Self-citationCircadian Clock Feedback Cycle Through NAMPT-Mediated NAD <sup>+</sup> Biosynthesis
Ramsey, K. M., Yoshino, J., Brace, C. S., Abrassart, D., Kobayashi, Y., Marcheva, B., Hong, H.-K., Chong, J. L., Buhr, E. D., Lee, C., et al. (2009) · Science · doi:10.1126/science.1171641 · Cited by 1,126 · see citing works
Purushotham, A., Schug, T. T., Xu, Q., Surapureddi, S., Guo, X., & Li, X. (2009) · Cell Metabolism · doi:10.1016/j.cmet.2009.02.006 · Cited by 1,112 · see citing works
Histone acetyltransferase complexes: one size doesn't fit all
Lee, K. K. W., & Workman, J. L. (2007) · Nature Reviews Molecular Cell Biology · doi:10.1038/nrm2145 · Cited by 1,091 · see citing works
The Histone Deacetylase Sirt6 Regulates Glucose Homeostasis via Hif1α
Zhong, L., D'Urso, A., Toiber, D., Sebastian, C., Henry, R. E., Vadysirisack, D. D., Guimaraes, A., Marinelli, B., Wikstrom, J. D., Nir, T., et al. (2010) · Cell · doi:10.1016/j.cell.2009.12.041 · Cited by 1,001 · see citing works
Kaati, G., Bygren, L., & Edvinsson, S. (2002) · European Journal of Human Genetics · doi:10.1038/sj.ejhg.5200859 · Cited by 896 · see citing works
Prenatal exposure to the Dutch famine and disease in later life: An overview
Painter, R. C., Roseboom, T. J., & Bleker, O. P. (2005) · Reproductive Toxicology · doi:10.1016/j.reprotox.2005.04.005 · Cited by 784 · see citing works
SIRT1 Improves Insulin Sensitivity under Insulin-Resistant Conditions by Repressing PTP1B
Sun, C., Zhang, F., Ge, X., Yan, T., Chen, X., Shi, X., & Zhai, Q. (2007) · Cell Metabolism · doi:10.1016/j.cmet.2007.08.014 · Cited by 766 · see citing works
Sauve, A. A., Wolberger, C., Schramm, V. L., & Boeke, J. D. (2006) · Annual Review of Biochemistry · doi:10.1146/annurev.biochem.74.082803.133500 · Cited by 763 · see citing works
Decoding the Epigenetic Language of Neuronal Plasticity
Borrelli, E., Nestler, E. J., Allis, C. D., & Sassone‐Corsi, P. (2008) · Neuron · doi:10.1016/j.neuron.2008.10.012 · Cited by 529 · see citing works
Self-citationRole of Jhdm2a in regulating metabolic gene expression and obesity resistance
Tateishi, K., Okada, Y., Kallin, E. M., & Zhang, Y. (2009) · Nature · doi:10.1038/nature07777 · Cited by 442 · see citing works
SIRT1 regulates the histone methyl-transferase SUV39H1 during heterochromatin formation.
Vaquero, A., Scher, M., Erdjument-Bromage, H., Tempst, P., Serrano, L., & Reinberg, D. (2007) · Nature · doi:10.1038/nature06268 · Cited by 439 · see citing works
Takahashi, H., McCaffery, J. M., Irizarry, R. A., & Boeke, J. D. (2006) · Molecular Cell · doi:10.1016/j.molcel.2006.05.040 · Cited by 438 · see citing works
Bancaud, A., Huet, S., Daigle, N., Mozziconacci, J., Beaudouin, J., & Ellenberg, J. (2009) · The EMBO Journal · doi:10.1038/emboj.2009.340 · Cited by 438 · see citing works
Wei, Y., Chen, Y.-H., Li, L., Lang, J., Yeh, S., Shi, B., Yang, C., Yang, J.-Y., Lin, C.-Y., Lai, C., et al. (2010) · Nature Cell Biology · doi:10.1038/ncb2139 · Cited by 380 · see citing works
Fast signals and slow marks: the dynamics of histone modifications
Barth, T. K., & Imhof, A. (2010) · Trends in Biochemical Sciences · doi:10.1016/j.tibs.2010.05.006 · Cited by 333 · see citing works
Self-citationEpigenetic responses to environmental change and their evolutionary implications
Turner, B. M. (2009) · Philosophical Transactions of the Royal Society B Biological Sciences · doi:10.1098/rstb.2009.0125 · Cited by 293 · see citing works
Huang, W., Ju, T.-K., Hung, M., & Chen, C. (2007) · Molecular Cell · doi:10.1016/j.molcel.2007.02.019 · Cited by 239 · see citing works
Sinclair, D. A. R., Syrzycka, M., Macauley, M. S., Rastgardani, T., Komljenovic, I., Vocadlo, D. J., Brock, H. W., & Honda, B. M. (2009) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0904638106 · Cited by 227 · see citing works
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Katoh, Y., Ikura, T., Hoshikawa, Y., Tashiro, S., Ito, T., Ohta, M., Kera, Y., Noda, T., & Igarashi, K. (2011) · Molecular Cell · doi:10.1016/j.molcel.2011.02.018 · Cited by 185 · see citing works
The multienzyme architecture of eukaryotic fatty acid synthases
Leibundgut, M., Maier, T., Jenni, S., & Ban, N. (2008) · Current Opinion in Structural Biology · doi:10.1016/j.sbi.2008.09.008 · Cited by 178 · see citing works
Albaugh, B. N., Arnold, K. M., & Denu, J. M. (2010) · ChemBioChem · doi:10.1002/cbic.201000438 · Cited by 117 · see citing works
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vel Szic, K. S., Declerck, K., Vidaković, M., & Vanden Berghe, W. (2015) · Clinical Epigenetics · doi:10.1186/s13148-015-0068-2 · Cited by 192 · see citing works
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Oosterveer, M. H., & Schoonjans, K. (2013) · Cellular and Molecular Life Sciences · doi:10.1007/s00018-013-1505-z · Cited by 96 · see citing works
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Cao, Y., Guo, W., Tian, S., He, X., Wang, X., Liu, X., Gu, K., Ma, X., Huang, D., Hu, L., et al. (2015) · The EMBO Journal · doi:10.15252/embj.201490441 · Cited by 94 · see citing works
Greco, C. M., Cervantes, M., Fustin, J., Ito, K., Ceglia, N., Samad, M., Shi, J., Koronowski, K. B., Forné, I., Ranjit, S., et al. (2020) · Science Advances · doi:10.1126/sciadv.abc5629 · Cited by 92 · see citing works
Self-citationThe Epigenetic Language of Circadian Clocks
Sahar, S., & Sassone‐Corsi, P. (2013) · Handbook of experimental pharmacology · doi:10.1007/978-3-642-25950-0_2 · Cited by 95 · see citing works
Self-citationSuccinylation of H3K122 destabilizes nucleosomes and enhances transcription
Zorro Shahidian, L., Haas, M., Le Gras, S., Nitsch, S., Mourão, A., Geerlof, A., Margueron, R., Michaelis, J., Daujat, S., & Schneider, R. (2021) · The EMBO Reports · doi:10.15252/embr.202051009 · Cited by 92 · see citing works
Unique Metabolic Features of Stem Cells, Cardiomyocytes, and Their Progenitors
Gaspar, J. A., Doss, M. X., Hengstler, J. G., Cadenas, C., Hescheler, J., & Sachinidis, A. (2014) · Circulation Research · doi:10.1161/circresaha.113.302021 · Cited by 90 · see citing works
Comes, S., Gagliardi, M., Laprano, N., Fico, A., Cimmino, A., Palamidessi, A., Cesare, D. D., Falco, S. D., Angelini, C., Scita, G., et al. (2013) · Stem Cell Reports · doi:10.1016/j.stemcr.2013.09.001 · Cited by 90 · see citing works
Mitochondrial stress management: a dynamic journey
Valera‐Alberni, M., & Cantó, C. (2018) · Cell Stress · doi:10.15698/cst2018.10.158 · Cited by 90 · see citing works
The circadian epigenome: how metabolism talks to chromatin remodeling
Aguilar‐Arnal, L., & Sassone‐Corsi, P. (2013) · Current Opinion in Cell Biology · doi:10.1016/j.ceb.2013.01.003 · Cited by 87 · see citing works
Self-citationZhang, Q., Bai, B., Mei, X., Wan, C., Cao, H., Li, D., Wang, S., Zhang, M., Wang, Z., Wu, J., et al. (2018) · Nature Communications · doi:10.1038/s41467-018-05451-7 · Cited by 84 · see citing works
Husse, J., Hintze, S. C., Gregor Eichele, C., Lehnert, H., & Oster, H. (2012) · PLoS ONE · doi:10.1371/journal.pone.0052983 · Cited by 82 · see citing works
Chromatin landscape and circadian dynamics: Spatial and temporal organization of clock transcription
Aguilar‐Arnal, L., & Sassone‐Corsi, P. (2014) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1411264111 · Cited by 83 · see citing works
Self-citationNarne, P., Pandey, V., & Phanithi, P. B. (2017) · Molecular and Cellular Neuroscience · doi:10.1016/j.mcn.2017.05.008 · Cited by 84 · see citing works
Kebede, A. F., Schneider, R., & Daujat, S. (2014) · FEBS Journal · doi:10.1111/febs.13047 · Cited by 82 · see citing works
Interactions between epigenetics and metabolism in cancers
Yun, J., Johnson, J. L., Hanigan, C. L., & Locasale, J. W. (2012) · Frontiers in Oncology · doi:10.3389/fonc.2012.00163 · Cited by 82 · see citing works
Emerging Role of Ferroptosis in the Pathogenesis of Ischemic Stroke: A New Therapeutic Target?
Bu, Z., Yu, H., Wang, J., He, X., Cui, Y., Feng, J., & Feng, J. (2021) · ASN NEURO · doi:10.1177/17590914211037505 · Cited by 87 · see citing works
When Metabolism and Epigenetics Converge
Sassone‐Corsi, P. (2013) · Science · doi:10.1126/science.1233423 · Cited by 83 · see citing works
Self-citationThe Yeast AMPK Homolog SNF1 Regulates Acetyl Coenzyme A Homeostasis and Histone Acetylation
Zhang, M., Galdieri, L. C., & Vančura, A. (2013) · Molecular and Cellular Biology · doi:10.1128/mcb.00198-13 · Cited by 79 · see citing works
Almassalha, L. M., Bauer, G. M., Chandler, J. E., Gladstein, S., Cherkezyan, L., Stypula‐Cyrus, Y., Weinberg, S. E., Zhang, D., Ruhoff, P. T., Roy, H. K., et al. (2016) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1608198113 · Cited by 81 · see citing works
Cancer progression is mediated by proline catabolism in non-small cell lung cancer
Liu, Y., Mao, C., Wang, M., Liu, N., Ouyang, L., Liu, S., Tang, H., Cao, Y., Liu, S., Wang, X., et al. (2020) · Oncogene · doi:10.1038/s41388-019-1151-5 · Cited by 78 · see citing works
Rodrigues, L. M., Uribe‐Lewis, S., Madhu, B., Honess, D. J., Stubbs, M., & Griffiths, J. R. (2017) · Cancer & Metabolism · doi:10.1186/s40170-017-0166-z · Cited by 78 · see citing works
Minireview: Obesity and Breast Cancer: A Tale of Inflammation and Dysregulated Metabolism
Simpson, E. R., & Brown, K. A. (2013) · Molecular Endocrinology · doi:10.1210/me.2013-1011 · Cited by 77 · see citing works
Spatial dynamics of SIRT1 and the subnuclear distribution of NADH species
Aguilar‐Arnal, L., Ranjit, S., Stringari, C., Orozco-Solís, R., Gratton, E., & Sassone‐Corsi, P. (2016) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1609227113 · Cited by 75 · see citing works
Self-citationLi, J., Zeng, G., Zhang, Z., Wang, Y., Shao, M., Li, C., Lu, Z., Zhao, Y. X., Zhang, F., & Ding, W. (2024) · Ecotoxicology and Environmental Safety · doi:10.1016/j.ecoenv.2024.116162 · Cited by 74 · see citing works
Reynolds, J. A., Bautista-Jimenez, R., & Denlinger, D. L. (2016) · Insect Biochemistry and Molecular Biology · doi:10.1016/j.ibmb.2016.06.012 · Cited by 71 · see citing works
The contributions of cancer cell metabolism to metastasis
Pascual, G., Domínguez, D., & Benitah, S. A. (2018) · Disease Models & Mechanisms · doi:10.1242/dmm.032920 · Cited by 71 · see citing works
The evolving role of diet in prostate cancer risk and progression
Kaiser, A., Haskins, C. P., Siddiqui, M. M., Hussain, A., & D’Adamo, C. R. (2019) · Current Opinion in Oncology · doi:10.1097/cco.0000000000000519 · Cited by 78 · see citing works
A comprehensive review on the efficacy of S-Adenosyl-L-methionine in Major Depressive Disorder.
Berardis, D. D., Orsolini, L., Serroni, N., Girinelli, G., Iasevoli, F., Tomasetti, C., de Bartolomeis, A., Mazza, M., Valchera, A., Fornaro, M., et al. (2016) · CNS & Neurological Disorders - Drug Targets · doi:10.2174/1871527314666150821103825 · Cited by 71 · see citing works
Navarro, E., Funtikova, A. N., Fitó, M., & Schröder, H. (2016) · The Journal of Nutritional Biochemistry · doi:10.1016/j.jnutbio.2016.03.012 · Cited by 69 · see citing works
The pyruvate dehydrogenase complex: Life’s essential, vulnerable and druggable energy homeostat
Stacpoole, P. W., & McCall, C. E. (2023) · Mitochondrion · doi:10.1016/j.mito.2023.02.007 · Cited by 68 · see citing works
Regulation of Nephron Progenitor Cell Self-Renewal by Intermediary Metabolism
Liu, J., Edgington-Giordano, F., Dugas, C. M., Abrams, A., Katakam, P. V. G., Satou, R., & Saifudeen, Z. R. (2017) · Journal of the American Society of Nephrology · doi:10.1681/asn.2016111246 · Cited by 68 · see citing works
Mitochondrial health, the epigenome and healthspan
Aon, M. A., Cortassa, S., Juhaszova, M., & Sollott, S. J. (2016) · Clinical Science · doi:10.1042/cs20160002 · Cited by 66 · see citing works
- Authors
- Katada, S., Imhof, A., & Sassone-Corsi, P.
- Affiliations
- University of California, Irvine (US)
- Center for Integrated Protein Science Munich (DE)
- Venue
- Cell
- Publisher
- Elsevier BV
- Published
- 2012-01
- Volume
- 148
- Issue
- 1-2
- Pages
- 24-28
- ISSN
- 0092-8674 (ISSN-L)
- OpenAlex
- W2034667463
- Cited by
- 315
- References
- 28
- Citations by year
- 2026: 8 · 2025: 8 · 2024: 16 · 2023: 19 · 2022: 21 · 2021: 25 · 2020: 16 · 2019: 23 · 2018: 23 · 2017: 22 · 2016: 33 · 2015: 30 · 2014: 23 · 2013: 28 · 2012: 19
- FWCI
- 12.83
- Type
- journal article
- Language
- en
- Open access
- bronze
- doi.org
- Licence
- www.elsevier.com/tdm/userlicense/1.0/ (tdm)
- www.elsevier.com/legal/tdmrep-license (tdm)
- www.elsevier.com/open-access/userlicense/1.0/ (vor, 563 d)
- doi.org/10.15223/policy-017 (stm-asf)
- doi.org/10.15223/policy-037 (stm-asf)
- doi.org/10.15223/policy-012 (stm-asf)
- doi.org/10.15223/policy-029 (stm-asf)
- doi.org/10.15223/policy-004 (stm-asf)
- Locations
- Cell (publishedVersion)
- PubMed (publishedVersion)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Epigenetics and DNA Methylation
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Genomics and Chromatin Dynamics
- Health Sciences › Medicine › Pediatrics, Perinatology and Child Health › Birth, Development, and Health
- Keywords
- epigenetics, metabolism, chromatin-modifying enzymes, histones, metabolic sensing, histone modifications, gene expression regulation, metabolite signaling
- MeSH terms
- Histones, NAD, Chromatin Assembly and Disassembly, Histone Code, Epigenesis, Genetic, Metabolic Networks and Pathways, Eukaryota
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