Cheese rind communities provide tractable systems for in situ and in vitro studies of microbial diversity
Open accessAbstract
Tractable microbial communities are needed to bridge the gap between observations of patterns of microbial diversity and mechanisms that can explain these patterns. We developed cheese rinds as model microbial communities by characterizing in situ patterns of diversity and by developing an in vitro system for community reconstruction. Sequencing of 137 different rind communities across 10 countries revealed 24 widely distributed and culturable genera of bacteria and fungi as dominant community members. Reproducible community types formed independent of geographic location of production. Intensive temporal sampling demonstrated that assembly of these communities is highly reproducible. Patterns of community composition and succession observed in situ can be recapitulated in a simple in vitro system. Widespread positive and negative interactions were identified between bacterial and fungal community members. Cheese rind microbial communities represent an experimentally tractable system for defining mechanisms that influence microbial community assembly and function.
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Claims other papers make about this one
Each is checked against this paper’s own text: does it say what the citing paper says it does?
Metagenomic studies have been mainly conducted on single food types and on limited sample sizes, hindering inter-study integrative analyses currently available only for other environments such as the human gut.
“Nevertheless, metagenomic studies have been mainly conducted on single food types 18-24 and on limited sample sizes, 25,26 hindering inter-study integrative analyses currently available only for other environments such as the human gut. 27-31”
From Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. (2024) · cites this paper as [20]
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
Cites
KEGG: Kyoto Encyclopedia of Genes and Genomes
Kanehisa, M. (2000) · Nucleic Acids Research · doi:10.1093/nar/28.1.27 · Cited by 37,077 · see citing works
Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics
White, T. J., Bruns, T., Lee, S., & Taylor, J. (1990) · PCR Protocols · doi:10.1016/b978-0-12-372180-8.50042-1 · Cited by 36,648 · see citing works
QIIME allows analysis of high-throughput community sequencing data
Caporaso, J. G., Kuczynski, J., Stombaugh, J., Bittinger, K., Bushman, F. D., Costello, E. K., Fierer, N., Peña, A. G., Goodrich, J. K., Gordon, J. I., et al. (2010) · Nature Methods · doi:10.1038/nmeth.f.303 · Cited by 34,887 · see citing works
KEGG: Kyoto Encyclopedia of Genes and Genomes
Ogata, H., Goto, S., Sato, K., Fujibuchi, W., Bono, H., & Kanehisa, M. (1999) · Nucleic Acids Research · doi:10.1093/nar/27.1.29 · Cited by 31,232 · see citing works
Metagenomic biomarker discovery and explanation
Segata, N., Izard, J., Waldron, L., Gevers, D., Miropolsky, L., Garrett, W. S., & Huttenhower, C. (2011) · Genome Biology · doi:10.1186/gb-2011-12-6-r60 · Cited by 16,192 · see citing works
PCR protocols — A guide to methods and applications
U.G. (1990) · Trends in Biochemical Sciences · doi:10.1016/0968-0004(90)90252-7 · Cited by 11,750 · see citing works
Gardes, M., & Bruns, T. (1993) · Molecular Ecology · doi:10.1111/j.1365-294x.1993.tb00005.x · Cited by 10,249 · see citing works
Bacterial biofilms: from the Natural environment to infectious diseases
Hall‐Stoodley, L., Costerton, J. W., & Stoodley, P. (2004) · Nature Reviews Microbiology · doi:10.1038/nrmicro821 · Cited by 7,133 · see citing works
The diversity and biogeography of soil bacterial communities
Fierer, N., & Jackson, R. B. (2006) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0507535103 · Cited by 5,711 · see citing works
Meyer, F., Paarmann, D., D'Souza, M., Olson, R., Glass, E., Kubal, M., Paczian, T., Rodriguez, A., Stevens, R. L., Wilke, A., et al. (2008) · BMC Bioinformatics · doi:10.1186/1471-2105-9-386 · Cited by 3,565 · see citing works
The human microbiome: at the interface of health and disease
Cho, I., & Blaser, M. J. (2012) · Nature Reviews Genetics · doi:10.1038/nrg3182 · Cited by 3,449 · see citing works
The Microbial Engines That Drive Earth's Biogeochemical Cycles
Falkowski, P. G., Fenchel, T., & Delong, E. F. (2008) · Science · doi:10.1126/science.1153213 · Cited by 3,379 · see citing works
The Uncultured Microbial Majority
Rappé, M. S., & Giovannoni, S. J. (2003) · Annual Review of Microbiology · doi:10.1146/annurev.micro.57.030502.090759 · Cited by 2,017 · see citing works
Patterns and Processes of Microbial Community Assembly
Nemergut, D. R., Schmidt, S. K., Fukami, T., O’Neill, S., Bilinski, T. M., Stanish, L. F., Knelman, J. E., Darcy, J. L., Lynch, R. C., Wickey, P., et al. (2013) · Microbiology and Molecular Biology Reviews · doi:10.1128/mmbr.00051-12 · Cited by 1,990 · see citing works
Global patterns in bacterial diversity
Lozupone, C., & Knight, R. D. (2007) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0611525104 · Cited by 1,832 · see citing works
Beyond biogeographic patterns: processes shaping the microbial landscape
Hanson, C. A., Fuhrman, J., Horner-Devine, M. C., & Martiny, J. B. (2012) · Nature Reviews Microbiology · doi:10.1038/nrmicro2795 · Cited by 1,544 · see citing works
Topographic diversity of fungal and bacterial communities in human skin
NIH Intramural Sequencing Center Comparative Sequencing Program, Findley, K., Oh, J., Yang, J., Conlan, S., Deming, C., Meyer, J. A., Schoenfeld, D., Nomicos, E., Park, M., et al. (2013) · Nature · doi:10.1038/nature12171 · Cited by 1,206 · see citing works
Metabolic Reconstruction for Metagenomic Data and Its Application to the Human Microbiome
Abubucker, S., Segata, N., Goll, J. B., Schubert, A. M., Izard, J., Cantarel, B. L., Rodriguez-Mueller, B., Zucker, J., Thiagarajan, M., Henrissat, B., et al. (2012) · PLoS Computational Biology · doi:10.1371/journal.pcbi.1002358 · Cited by 1,050 · see citing works
Microbial biogeography of wine grapes is conditioned by cultivar, vintage, and climate
Bokulich, N. A., Thorngate, J. H., Richardson, P. M., & Mills, D. A. (2013) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1317377110 · Cited by 1,000 · see citing works
The Complex Microbiota of Raw Milk
Quigley, L., O'Sullivan, O., Stanton, C., Beresford, T. P., Ross, R. P., Fitzgerald, G. F., & Cotter, P. D. (2013) · FEMS Microbiology Reviews · doi:10.1111/1574-6976.12030 · Cited by 919 · see citing works
Recent advances in cheese microbiology
Beresford, T. P., Fitzsimons, N. A., Brennan, N. L., & Cogan, T. M. (2001) · International Dairy Journal · doi:10.1016/s0958-6946(01)00056-5 · Cited by 823 · see citing works
Xenobiotics shape the physiology and gene expression of the active human gut microbiome
Maurice, C. F., Haiser, H. J., & Turnbaugh, P. J. (2013) · Cell · doi:10.1016/j.cell.2012.10.052 · Cited by 811 · see citing works
Holmström, C., & Kjelleberg, S. J. (1999) · FEMS Microbiology Ecology · doi:10.1111/j.1574-6941.1999.tb00656.x · Cited by 597 · see citing works
Big questions, small worlds: microbial model systems in ecology
Jessup, C. M., Kassen, R., Forde, S. E., Kerr, B., Buckling, A. G. J., Rainey, P. B., & Bohannan, B. J. M. (2004) · Trends in Ecology & Evolution · doi:10.1016/j.tree.2004.01.008 · Cited by 449 · see citing works
Holmström, C. (1999) · FEMS Microbiology Ecology · doi:10.1016/s0168-6496(99)00063-x · Cited by 442 · see citing works
A meta-analysis of changes in bacterial and archaeal communities with time
Shade, A. L., Caporaso, J. G., Handelsman, J., Knight, R. D., & Fierer, N. (2013) · The ISME Journal · doi:10.1038/ismej.2013.54 · Cited by 399 · see citing works
Vaysse, A., Ratnakumar, A., Derrien, T., Axelsson, E., Pielberg, G., Sigurðsson, S., Fall, T., Seppälä, E. H., Hansen, M. S., Lawley, C., et al. (2011) · PLoS Genetics · doi:10.1371/journal.pgen.1002316 · Cited by 390 · see citing works
Médigue, C., Krin, E., Pascal, G., Barbe, V., Bernsel, A., Bertin, P. N., Cheung, F., Cruveiller, S., D’Amico, S., Duilio, A., et al. (2005) · Genome Research · doi:10.1101/gr.4126905 · Cited by 390 · see citing works
Tracking footprints of artificial selection in the dog genome
Akey, J. M., Ruhe, A. L., Akey, D. T., Wong, A. K., Connelly, C. F., Madeoy, J., Nicholas, T. J., & Neff, M. W. (2010) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0909918107 · Cited by 350 · see citing works
Unraveling Microbial Interactions in Food Fermentations: from Classical to Genomics Approaches
Sieuwerts, S., de Bok, F. A. M., Hugenholtz, J., & Vlieg, J. E. T. V. H. (2008) · Applied and Environmental Microbiology · doi:10.1128/aem.00113-08 · Cited by 341 · see citing works
Facility-specific “house” microbiome drives microbial landscapes of artisan cheesemaking plants
Bokulich, N. A., & Mills, D. A. (2013) · Applied and Environmental Microbiology · doi:10.1128/aem.00934-13 · Cited by 295 · see citing works
Quigley, L., O’Sullivan, Ó., Beresford, T. P. J., Ross, R. P., Fitzgerald, G. F., & Cotter, P. D. (2012) · Applied and Environmental Microbiology · doi:10.1128/aem.00918-12 · Cited by 259 · see citing works
Microbial Interactions within a Cheese Microbial Community
Mounier, J., Monnet, C., Vallaeys, T., Roger Arditi, B., Sarthou, A., Hélias, A., & Irlinger, F. (2007) · Applied and Environmental Microbiology · doi:10.1128/aem.01338-07 · Cited by 248 · see citing works
Marsh, A. J., O’Sullivan, Ó., Hill, C., Ross, R. P., & Cotter, P. D. (2013) · PLoS ONE · doi:10.1371/journal.pone.0069371 · Cited by 221 · see citing works
New tools for the genetic manipulation of filamentous fungi
Kück, U., & Hoff, B. (2010) · Applied Microbiology and Biotechnology · doi:10.1007/s00253-009-2416-7 · Cited by 213 · see citing works
Multiple recent horizontal transfers of a large genomic region in cheese making fungi
Cheeseman, K., Ropars, J., Renault, P., Dupont, J., Gouzy, J., Branca, A., Abraham, A., Ceppi, M., Conseiller, E., Debuchy, R., et al. (2014) · Nature Communications · doi:10.1038/ncomms3876 · Cited by 198 · see citing works
Biodiversity of the Bacterial Flora on the Surface of a Smear Cheese
Brennan, N. L., Ward, A. C., Beresford, T. P., Fox, P. F., Goodfellow, M., & Cogan, T. M. (2002) · Applied and Environmental Microbiology · doi:10.1128/aem.68.2.820-830.2002 · Cited by 196 · see citing works
Cow Teat Skin, a Potential Source of Diverse Microbial Populations for Cheese Production
Verdier‐Metz, I., Gagné, G., Bornes, S., Monsallier, F., Veisseire, P., Delbès, C., & Montel, M. (2011) · Applied and Environmental Microbiology · doi:10.1128/aem.06229-11 · Cited by 166 · see citing works
The genomic code: inferring Vibrionaceae niche specialization
Reen, F. J., Almagro‐Moreno, S., Ussery, D. W., & Boyd, E. F. (2006) · Nature Reviews Microbiology · doi:10.1038/nrmicro1476 · Cited by 147 · see citing works
Geomicrobiology: Molecular and Environmental Perspective
Barton, L. L., Mandl, M., & Loy, A. (2010) · Springer eBooks · doi:10.1007/978-90-481-9204-5 · Cited by 138 · see citing works
Genes but Not Genomes Reveal Bacterial Domestication of Lactococcus Lactis
Passerini, D., Beltramo, C., Coddeville, M., Quentin, Y., Ritzenthaler, P., Daveran‐Mingot, M., & Bourgeois, P. (2010) · PLoS ONE · doi:10.1371/journal.pone.0015306 · Cited by 131 · see citing works
Meersman, E., Steensels, J., Mathawan, M., Wittocx, P.-J., Saels, V., Struyf, N., Bernaert, H., Vrancken, G., & Verstrepen, K. J. (2013) · PLoS ONE · doi:10.1371/journal.pone.0081559 · Cited by 104 · see citing works
Mounier, J., Monnet, C., Jacques, N., Antoinette, A., & Irlinger, F. (2009) · International Journal of Food Microbiology · doi:10.1016/j.ijfoodmicro.2009.04.020 · Cited by 103 · see citing works
Amárita, F., Yvon, M., Nardi, M., et al. (2004) · Applied and Environmental Microbiology · doi:10.1128/aem.70.12.7348-7354.2004 · Cited by 102 · see citing works
Monnet, C., Loux, V., Gibrat, J.-F., Spinnler, H.-É., Barbe, V., Vacherie, B., Gavory, F., Gourbeyre, E., Siguier, P., Chandler, M., et al. (2010) · PLoS ONE · doi:10.1371/journal.pone.0015489 · Cited by 92 · see citing works
Microbial Diversity of Cave Ecosystems
Engel, A. S. (2010) · Springer eBooks · doi:10.1007/978-90-481-9204-5_10 · Cited by 86 · see citing works
From Animalcules to an Ecosystem: Application of Ecological Concepts to the Human Microbiome
Fierer, N., Ferrenberg, S. M., Flores, G. E., González, A., Kueneman, J. G., Legg, T. M., Lynch, R. C., McDonald, D. T., Mihaljevic, J. R., O’Neill, S., et al. (2012) · Annual Review of Ecology Evolution and Systematics · doi:10.1146/annurev-ecolsys-110411-160307 · Cited by 83 · see citing works
de Pascale, D., Cusano, A. M., Autore, F., Parrilli, E., di Prisco, G., Marino, G., & Tutino, M. L. (2008) · Extremophiles · doi:10.1007/s00792-008-0163-9 · Cited by 80 · see citing works
Schröder, J., Maus, I., Trost, E., & Tauch, A. (2011) · BMC Genomics · doi:10.1186/1471-2164-12-545 · Cited by 76 · see citing works
Marcellino, N., & Benson, D. R. (1992) · Applied and Environmental Microbiology · doi:10.1128/aem.58.11.3448-3454.1992 · Cited by 56 · see citing works
An update on the molecular genetics toolbox for staphylococci
Prax, M., Lee, C. Y., & Bertram, R. (2013) · Microbiology · doi:10.1099/mic.0.061705-0 · Cited by 34 · see citing works
Minhas, A. P., Biswas, D., & Mondal, A. K. (2008) · FEMS Yeast Research · doi:10.1111/j.1567-1364.2008.00457.x · Cited by 30 · see citing works
Identification of Microbiota Present on the Surface of Taleggio Cheese Using PCR–DGGE and RAPD–PCR
Feligini, M., Panelli, S., Buffoni, J. N., Bonacina, C., Andrighetto, C., & Lombardi, A. (2012) · Journal of Food Science · doi:10.1111/j.1750-3841.2012.02932.x · Cited by 30 · see citing works
de Pascale, D., Giuliani, M., Santi, C. D., et al. (2010) · Polar Science · doi:10.1016/j.polar.2010.03.009 · Cited by 17 · see citing works
Na, J.-M., Kang, M.-S., Kim, J., et al. (2011) · Cited by 6 · see citing works
Flagged first, then by citations
Research works printed but not linked: 1
- Fox PF McSweeney PLH Cogan TM Guinee TP 2004 Cheese: Chemistry, Physics and Microbiology 1 London Academic Press
Cited by
Sorted by citations
Health benefits of fermented foods: Microbiota and beyond
Marco, M. L., Heeney, D., Binda, S., Cifelli, C. J., Cotter, P. D., Foligné, B., Gänzle, M., Kort, R., Pasin, G., Pihlanto, A., et al. (2017) · Current Opinion in Biotechnology · doi:10.1016/j.copbio.2016.11.010 · Cited by 1,674 · see citing works
Fermented foods in a global age: east meets West
Tamang, J. P., Cotter, P. D., Endo, A., Han, N. S., Kort, R., Liu, S. Q., Mayo, B., Westerik, N., & Hutkins, R. (2020) · Comprehensive Reviews in Food Science and Food Safety · doi:10.1111/1541-4337.12520 · Cited by 719 · see citing works
Fermented Foods as Experimentally Tractable Microbial Ecosystems
Wolfe, B. E., & Dutton, R. J. (2015) · Cell · doi:10.1016/j.cell.2015.02.034 · Cited by 386 · see citing works
Self-citationLarge-scale genome-wide analysis links lactic acid bacteria from food with the gut microbiome
Pasolli, E., De Filippis, F., Mauriello, I. E., Cumbo, F., Walsh, A. M., Leech, J., Cotter, P. D., Segata, N., & Ercolini, D. (2020) · Nature Communications · doi:10.1038/s41467-020-16438-8 · Cited by 367 · see citing works
Metabolic cooperation and spatiotemporal niche partitioning in a kefir microbial community
Blasche, S., Kim, Y., Mars, R. A. T., Machado, D., Maansson, M., Kafkia, E., Milanese, A., Zeller, G., Teusink, B., Nielsen, J., et al. (2021) · Nature Microbiology · doi:10.1038/s41564-020-00816-5 · Cited by 328 · see citing works
Leech, J., Cabrera-Rubio, R., Walsh, A. M., Macori, G., Walsh, C. J., Barton, W., Finnegan, L., Crispie, F., O’Sullivan, O., Claesson, M. J., et al. (2020) · mSystems · doi:10.1128/msystems.00522-20 · Cited by 200 · see citing works
Blaya, J., Barzideh, Z., & LaPointe, G. (2018) · Journal of Dairy Science · doi:10.3168/jds.2017-13345 · Cited by 200 · see citing works
De Filippis, F., Genovese, A., Ferranti, P., Gilbert, J. A., & Ercolini, D. (2016) · Scientific Reports · doi:10.1038/srep21871 · Cited by 196 · see citing works
Metagenomic analysis of a Mexican ripened cheese reveals a unique complex microbiota
Escobar-Zepeda, A., Sanchez-Flores, A., & Quirasco Baruch, M. (2016) · Food Microbiology · doi:10.1016/j.fm.2016.02.004 · Cited by 174 · see citing works
Recent Past, Present, and Future of the Food Microbiome
De Filippis, F., Parente, E., & Ercolini, D. (2018) · Annual Review of Food Science and Technology · doi:10.1146/annurev-food-030117-012312 · Cited by 163 · see citing works
Sequencing of the cheese microbiome and its relevance to industry
Yeluri Jonnala, B. R., McSweeney, P. L. H., Sheehan, J. J., & Cotter, P. D. (2018) · Frontiers in Microbiology · doi:10.3389/fmicb.2018.01020 · Cited by 160 · see citing works
Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome.
Carlino, N., Blanco-Míguez, A., Punčochář, M., Mengoni, C., Pinto, F., Tatti, A., Manghi, P., Armanini, F., Avagliano, M., Barcenilla, C., et al. (2024) · Cell · doi:10.1016/j.cell.2024.07.039 · Cited by 146 · see citing works
Meta-analysis of cheese microbiomes highlights contributions to multiple aspects of quality
Walsh, A. M., Macori, G., Kilcawley, K. N., & Cotter, P. D. (2020) · Nature Food · doi:10.1038/s43016-020-0129-3 · Cited by 133 · see citing works
Biotic Interactions Shape the Ecological Distributions of <i>Staphylococcus</i> Species
Kastman, E. K., Kamelamela, N., Norville, J. W., Cosetta, C. M., Dutton, R. J., & Wolfe, B. E. (2016) · mBio · doi:10.1128/mbio.01157-16 · Cited by 127 · see citing works
Self-citationCheesomics: the future pathway to understanding cheese flavour and quality.
Afshari, R., Pillidge, C. J., Dias, D. A., Osborn, A. M., & Gill, H. (2020) · Critical Reviews in Food Science and Nutrition · doi:10.1080/10408398.2018.1512471 · Cited by 126 · see citing works
Shotgun Metagenomics of a Water Kefir Fermentation Ecosystem Reveals a Novel Oenococcus Species
Verce, M., De Vuyst, L., & Weckx, S. (2019) · Frontiers in Microbiology · doi:10.3389/fmicb.2019.00479 · Cited by 121 · see citing works
Zooming into food-associated microbial consortia: a “cultural” evolution
Cocolin, L., & Ercolini, D. (2015) · Current Opinion in Food Science · doi:10.1016/j.cofs.2015.01.003 · Cited by 93 · see citing works
Colonization of the human gut by bovine bacteria present in Parmesan cheese
Milani, C., Duranti, S., Napoli, S., Alessandri, G., Mancabelli, L., Anzalone, R., Longhi, G., Viappiani, A., Mangifesta, M., Lugli, G. A., et al. (2019) · Nature Communications · doi:10.1038/s41467-019-09303-w · Cited by 78 · see citing works
Gonçalves Dos Santos, M. T. P., Benito, M. J., Córdoba, M. D. G., Alvarenga, N., & Ruiz-Moyano Seco de Herrera, S. (2017) · International Journal of Food Microbiology · doi:10.1016/j.ijfoodmicro.2017.09.013 · Cited by 74 · see citing works
Falardeau, J., Keeney, K., Trmčić, A., Kitts, D., & Wang, S. (2019) · Food Microbiology · doi:10.1016/j.fm.2019.04.002 · Cited by 69 · see citing works
Choi, J., In Lee, S., Rackerby, B., Frojen, R., Goddik, L., Ha, S.-D., & Park, S. H. (2020) · Applied Microbiology and Biotechnology · doi:10.1007/s00253-020-10651-7 · Cited by 60 · see citing works
Afshari, R., Pillidge, C. J., Read, E., Rochfort, S., Dias, D. A., Osborn, A. M., & Gill, H. (2020) · Scientific Reports · doi:10.1038/s41598-020-59617-9 · Cited by 58 · see citing works
Integrated molecular approaches for fermented food microbiome research
Walsh, A. M., Leech, J., Huttenhower, C., Delhomme-Nguyen, H., Crispie, F., Chervaux, C., & Cotter, P. D. (2023) · FEMS Microbiology Reviews · doi:10.1093/femsre/fuad001 · Cited by 56 · see citing works
Revealing the microbial heritage of traditional Brazilian cheeses through metagenomics
Kothe, C. I., Mohellibi, N., & Renault, P. (2022) · Food Research International · doi:10.1016/j.foodres.2022.111265 · Cited by 51 · see citing works
Microbiota of Cheese Ecosystems: A Perspective on Cheesemaking
Neviani, E., Gatti, M., Gardini, F., & Levante, A. (2025) · Foods · doi:10.3390/foods14050830 · Cited by 39 · see citing works
Proteolysis in Irish farmhouse Camembert cheese during ripening
Mane, A., & McSweeney, P. L. H. (2020) · Journal of Food Biochemistry · doi:10.1111/jfbc.13101 · Cited by 35 · see citing works
Microbiome and -omics application in food industry
Ferrocino, I., Rantsiou, K., & Cocolin, L. (2022) · International Journal of Food Microbiology · doi:10.1016/j.ijfoodmicro.2022.109781 · Cited by 34 · see citing works
Alexa, E. A., Cobo-Díaz, J. F., Renes, E., O´Callaghan, T. F., Kilcawley, K., Mannion, D., Skibinska, I., Ruiz, L., Margolles, A., Fernández-Gómez, P., et al. (2024) · Microbiome · doi:10.1186/s40168-024-01790-4 · Cited by 28 · see citing works
Universal Drivers of Cheese Microbiomes
Reuben, R. C., Langer, D., Eisenhauer, N., & Jurburg, S. D. (2023) · iScience · doi:10.1016/j.isci.2022.105744 · Cited by 21 · see citing works
- Authors
- Wolfe, B. E., Button, J. E., Santarelli, M., & Dutton, R. J.
- Affiliations
- Harvard University (US)
- Corresponding author
- Dutton, Rachel J.
- Venue
- Cell
- Publisher
- Elsevier BV
- Published
- 2014-07
- Volume
- 158
- Issue
- 2
- Pages
- 422-433
- ISSN
- 0092-8674 (ISSN-L)
- PMC
- PMC4222527
- OpenAlex
- W2024775172
- Cited by
- 648
- References
- 55
- Citations by year
- 2026: 50 · 2025: 51 · 2024: 64 · 2023: 75 · 2022: 74 · 2021: 57 · 2020: 65 · 2019: 55 · 2018: 44 · 2017: 51 · 2016: 36 · 2015: 22 · 2014: 4
- FWCI
- 32.66
- Type
- journal article
- Language
- en
- Open access
- bronze
- doi.org
- Licence
- Locations
- Cell (publishedVersion)
- PubMed (publishedVersion)
- PubMed Central (acceptedVersion)
- Funders
- National Institutes of Health
- National Institute of General Medical Sciences (P50GM068763)
- Topics
- Physical Sciences › Environmental Science › Ecology › Microbial Community Ecology and Physiology
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Gut microbiota and health
- Life Sciences › Agricultural and Biological Sciences › Food Science › Probiotics and Fermented Foods
- Keywords
- cheese rind, microbial communities, microbial diversity, community assembly, fungal-bacterial interactions, community succession, community composition, culturable bacteria, culturable fungi, regional variation, temporal sampling
- MeSH terms
- Amino Acid Sequence, Bacteria, Cheese, Fungi, Molecular Sequence Data, Phylogeny, Sequence Alignment, Bacterial Physiological Phenomena, Biofilms, Biodiversity, Metagenomics
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review
