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Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life
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“that have been found to be highly transmitted from mother to child in several studies10,15,16,17,41 and that are also present but not shared in pairs from non-westernized populations (Figure 2C).”
From Maternal and food microbial sources shape the infant microbiome of a rural Ethiopian population (2023) · cites this paper as [10]
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“While Escherichia coli and Bifidobacterium spp. are the most shared within the European pairs, as previously described,10,15,16,17,41”
From Maternal and food microbial sources shape the infant microbiome of a rural Ethiopian population (2023) · cites this paper as [10]
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Introduction to the human gut microbiota
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“These microbes continue to persist at least throughout the first year of life [78] and possibly contribute to infant infection burden.”
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“Otherstudieshavealso succeededinreconstructingmicrobialgenomesbymetagenomic assembly on single human cohorts (Bäckhed et al., 2015; Brooks et al., 2017; Ferretti et al., 2018; HumanMicrobiomeProject Consortium, 2012; Raveh-Sadka et al., 2015; Sharon et al., 2013), but systematic cross-study cataloging of metagenomical…”
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“These include: Cesarean delivery 40,43,52 , exclusive breastfeeding 26,42,59 , maternal high fat diet 47 , maternal obesity 46 , transition to solid foods 30 , and other yet unknown factors 52 .”
InfluentialGut instincts: microbiota as a key regulator of brain development, ageing and neurodegeneration
Dinan, T. G., & Cryan, J. F. (2017) · The Journal of Physiology · doi:10.1113/jp273106 · Cited by 813
“…of the infant gut for the most part begins at birth, when delivery through the birth canal exposes the infant to its mother’s microbiota and thus initiates an initial maternal signature to the microbiota (Donnet-Hughes et al. 2010; Collado et al. 2012; Matamoros et al. 2013; Backhed et al. 2015).”
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Impact of microbiota on central nervous system and neurological diseases: the gut-brain axis
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“fected by exposure to various environmental factors [15] while host microbiome also exhibits dynamic variation in its composition during brain maturation [92].”
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Nagpal, R., Mainali, R., Ahmadi, S., Wang, S., Singh, R., Kavanagh, K., Kitzman, D. W., Kushugulova, A., Marotta, F., & Yadav, H. (2018) · Nutrition and Healthy Aging · doi:10.3233/nha-170030 · Cited by 670
Microbial Changes during Pregnancy, Birth, and Infancy
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“While some of these studies indicate changes in bacterial composition of the placenta correlating to preterm deliveries, more research is needed to validate microbial placental signatures associated with preterm birth.”
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“Our results are in agreement with previous studies reporting a delayed colonization by Ato-pobium cluster, Bifidobacterium and Bacteroides species in infants born by CS, whereas they are more often colonized by Enterococcus and Clostridium species [12, 15, 54 – 57].”
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“of age and becomes progressively diverse [25, 26, 33, 35, 36].”
Innate Immunity and Breast Milk
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“Variability between these two studies and others (43) can be attributed to the use of different primers, types of sequencing, comparison with different microbial reference libraries, possible variation due to geographic regions, and timing of the milk collection as well as technique and sterility of milk collection (4…”
BackgroundThe early infant gut microbiome varies in association with a maternal high-fat diet
Chu, D. M., Antony, K. M., Ma, J., Prince, A., Showalter, L., Moller, M., & Aagaard, K. M. (2016) · Genome Medicine · doi:10.1186/s13073-016-0330-z · Cited by 382
“observations [8, 33], comparisons of the neonatal gut microbiome at delivery and at 6 weeks demonstrated”
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The impact of the microbiota-gut-brain axis on Alzheimer’s disease pathophysiology
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Self-citationGut Microbiota-Dependent Modulation of Energy Metabolism
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Sex differences in the gut microbiome–brain axis across the lifespan
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Microbes vs. chemistry in the origin of the anaerobic gut lumen
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“Nonetheless, at early stages of life, chemically created hypoxia in the lumen of the gut may play a role in the early colonization of the infant gut, where facultative anaerobic bacteria are dominant (33).”
BackgroundEngevik, M. A., Luk, B., Chang‐Graham, A. L., Hall, A., Herrmann, B. I., Ruan, W. H., Endres, B. T., Shi, Z., Garey, K. W., Hyser, J. M., et al. (2019) · mBio · doi:10.1128/mbio.01087-19 · Cited by 280
Shaping the Gut Microbiota by Breastfeeding: The Gateway to Allergy Prevention?
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Problems with the concept of gut microbiota dysbiosis
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Factors Affecting Gastrointestinal Microbiome Development in Neonates
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“By contrast, significant overlap between the microbiota of mothers and children that are born by C-section has not been observed [38,63].”
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Lane, E. R., Zisman, T., & Suskind, D. (2017) · Journal of Inflammation Research · doi:10.2147/jir.s116088 · Cited by 226
“44–46 During childhood and adulthood, diet appears to have a major influence on microbial composition and function.”
Bile acids drive the newborn’s gut microbiota maturation
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Oral microbiome: possible harbinger for children’s health
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Interaction of Intestinal Bacteria with Human Rotavirus during Infection in Children
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“Ruminococcus species have been associated with the important function of degrading resistant starch from food [28,29], and they are important in the maturation of the intestinal microbiota during human development [30].”
BackgroundRobust variation in infant gut microbiome assembly across a spectrum of lifestyles
Olm, M. R., Dahan, D., Carter, M. M., Merrill, B. D., Yu, F. B., Jain, S., Meng, X., Tripathi, S. M., Wastyk, H. C., Neff, N. F., et al. (2022) · Science · doi:10.1126/science.abj2972 · Cited by 213
“To address whether lifestyle-dependent divergence of infant microbiotas could be explained by strain sharing between mothers and their infants, we performed the same detailed strain-tracking analysis on a previously sequenced dataset of 100 mother-infant dyads from Sweden (32).”
Neonatal selection by Toll-like receptor 5 influences long-term gut microbiota composition
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Maternal Microbiota, Early Life Colonization and Breast Milk Drive Immune Development in the Newborn
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Sex, microbes, and polycystic ovary syndrome
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Development of the Pediatric Gut Microbiome: Impact on Health and Disease
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“Development of the Infant Intestinal Microbiota During the first year of an infant’s life, the relatively simple neonatal microbiome matures and develops into a more complex microbiome, with a composition more representative of an adult gastrointestinal tract enriched in Bacteroides and Firmicutes.(32,40) During the f…”
InfluentialBifidobacteria and the infant gut: an example of co-evolution and natural selection
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Early-Life Antibiotic-Driven Dysbiosis Leads to Dysregulated Vaccine Immune Responses in Mice
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Hypothesis testing and statistical analysis of microbiome
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Nutritional Gaps and Supplementation in the First 1000 Days
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The developing gut microbiota and its consequences for health
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“Interestingly, although throughout the first year of life bacterial profiles become more similar whatever the mode of birth, differences in bacterial profiles can persist throughout the first year of life.(15,17,18) Differences linked to cesarean birth has been reported later in life in an American cohort of adults; h…”
BackgroundDo bacteria shape our development? Crosstalk between intestinal microbiota and HPA axis
de Weerth, C. (2017) · Neuroscience & Biobehavioral Reviews · doi:10.1016/j.neubiorev.2017.09.016 · Cited by 189
“Evidence for this comes from the strong link that is found between mother-infant microbiota in the first year after delivery (Bäckhed et al., 2015; Chu et al., 2017; Grönlund et al., 2011).”
The global human gut microbiome: genes, lifestyles, and diet
Parizadeh, M., & Arrieta, M. (2023) · Trends in Molecular Medicine · doi:10.1016/j.molmed.2023.07.002 · Cited by 205
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Bacteroides-dominant gut microbiome of late infancy is associated with enhanced neurodevelopment
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“muciniphila is also detected in feces from newborns and the incidence increases rapidly during the first year of life [4], reaching 0.”
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Aberrant IgA responses to the gut microbiota during infancy precede asthma and allergy development
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“Others have found that infants still receiving HM at 9 mos harbored lower levels of butyrateproducing bacteria, C. leptum, C. coccoides, and Roseburia, as well as Bacteroidetes45 which have been previously noted to increase when infants begin to consume solid foods.1,20 Infants still partially breastfed at 9 mos, comp…”
BackgroundResultInfluentialThe Relationship Between Breast Milk Components and the Infant Gut Microbiota
Boudry, G., Charton, E., Huërou‐Luron, I. L., Ferret‐Bernard, S., Gall, S. L., Even, S., & Blat, S. (2021) · Frontiers in Nutrition · doi:10.3389/fnut.2021.629740 · Cited by 165
Psychological comorbidity in gastrointestinal diseases: Update on the brain-gut-microbiome axis
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Breastfeeding Contributes to Physiological Immune Programming in the Newborn
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“Together, these reports suggest that while the infant microbiota is definitely, strongly influenced by delivery mode, these differences (with the exception of lactobacilli) are not noticeable at meconium stage and become prominent thereafter (Backhed et al., 2015; Bokulich et al., 2016).”
BackgroundInfluentialImpact of prematurity and nutrition on the developing gut microbiome and preterm infant growth
Grier, A., Qiu, X., Bandyopadhyay, S., Holden‐Wiltse, J., Kessler, H. A., Gill, A. L., Hamilton, B., Huyck, H. L., Misra, S. K., Mariani, T. J., et al. (2017) · Microbiome · doi:10.1186/s40168-017-0377-0 · Cited by 154
Self-citationTiny microbes, enormous impacts: what matters in gut microbiome studies?
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“Each protein was assigned to the database based on the highest scoring annotated hit(s) containing at least one highscoring segment pairs (HSP) scoring over 60 [53].”
MethodThe microbiome: An emerging key player in aging and longevity
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Connection between gut microbiome and brain development in preterm infants
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“Duration of IP antibiotics (minutes) — 330 (44, 849) 42 (10, 85)”
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Alterations of gut microbiota contribute to the progression of unruptured intracranial aneurysms
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Self-citationEarly‐Life Gut Microbiome—The Importance of Maternal and Infant Factors in Its Establishment
Kapourchali, F. R., & Cresci, G. (2020) · Nutrition in Clinical Practice · doi:10.1002/ncp.10490 · Cited by 137
Cognitive Function and the Microbiome
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The Skin and Intestinal Microbiota and Their Specific Innate Immune Systems
Coates, M., Lee, M. J., Norton, D., & MacLeod, A. S. (2019) · Frontiers in Immunology · doi:10.3389/fimmu.2019.02950 · Cited by 144
Successional Stages in Infant Gut Microbiota Maturation
Beller, L., Deboutte, W., Falony, G., Vieira‐Silva, S., Tito, R. Y., Valles‐Colomer, M., Rymenans, L., Jansen, D., Espen, L. V., Papadaki, M. I., et al. (2021) · mBio · doi:10.1128/mbio.01857-21 · Cited by 146
“Although early-life factors such as birth mode and diet have been shown to affect the development of the infant gut microbiota (4, 5), our current understanding of human gut colonization in early life remains limited.”
Sohail, M. U., Yassine, H. M., Sohail, A., & Thani, A. A. A. (2019) · Review of Diabetic Studies · doi:10.1900/rds.2019.15.35 · Cited by 128
“…a number of habitual and environmental factors contribute to shaping the host microbiome, including mode of delivery at birth, breastfeeding as opposed to formula feeding, adult dietary habits, hygiene, physical activity, antibiotics or xenobiotics exposure, and geographical location [12-14].”
BackgroundIndividuality and convergence of the infant gut microbiota during the first year of life
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Ethnic and diet-related differences in the healthy infant microbiome
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“Not surprisingly, breastfeeding status at the time of sample collection was strongly associated with the abundance of the genera Bifdobacterium (phylum Actinobacteria; Fig.”
BackgroundInfluentialExtrinsic factors influencing gut microbes, the immediate consequences and restoring eubiosis
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The Bacterial Microbiome and Virome Milestones of Infant Development
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Self-citationThe developing infant gut microbiome: A strain-level view
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“The HM microbiome is dominated by Staphylococcus and Streptococcus, but also contains Bifidobacterium, Lactobacillus, Clostridium, and Veillonella, all resident genera found in the early infant microbiome [4, 15–17].”
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“breastfed versus formula-fed infants, Backhed and coworkers (18) reported elevated leucine degradation or β-oxidation of long chain fatty acids pathways in faecal”
BackgroundInfluentialBeyond 16S rRNA Community Profiling: Intra-Species Diversity in the Gut Microbiota
Ellegaard, K., & Engel, P. (2016) · Frontiers in Microbiology · doi:10.3389/fmicb.2016.01475 · Cited by 113
“Likewise, they may prevent massive expansions of strains in the gut by targeting abundant strains preferentially, thereby facilitating the maintenance of strain diversity (Barr et al., 2013).”
BackgroundThe early life education of the immune system: Moms, microbes and (missed) opportunities
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The Potential Influence of the Bacterial Microbiome on the Development and Progression of ADHD
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Metadata
- Authors
- Bäckhed, F., Roswall, J., Peng, Y., Feng, Q., Jia, H., Kovatcheva-Datchary, P., Li, Y., Xia, Y., Xie, H., Zhong, H., Khan, M. T., Zhang, J., Li, J., Xiao, L., Al-Aama, J., Zhang, D., Lee, Y. S., Kotowska, D., Colding, C., Tremaroli, V., Yin, Y., Bergman, S., Xu, X., Madsen, L., Kristiansen, K., Dahlgren, J., & Wang, J.
- Corresponding author
- Bäckhed, Fredrik
- Dahlgren, Jovanna
- Wang, Jun
- ORCID
- Venue
- Cell Host & Microbe
- Publisher
- Elsevier BV
- Published
- 2015-06
- Volume
- 17
- Issue
- 6
- Pages
- 852
- ISSN
- 1931-3128 (ISSN-L)
- OpenAlex
- W4231110705
- Cited by
- 738
- References
- 0
- Citations by year
- 2026: 36 · 2025: 54 · 2024: 51 · 2023: 70 · 2022: 69 · 2021: 112 · 2020: 122 · 2019: 81 · 2018: 55 · 2017: 43 · 2016: 40 · 2015: 4
- FWCI
- 20.56
- Type
- journal article
- Language
- en
- Open access
- bronze
- doi.org
- Licence
- Locations
- Cell Host & Microbe (publishedVersion)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Gut microbiota and health
- Health Sciences › Nursing › Nutrition and Dietetics › Infant Nutrition and Health
- Life Sciences › Agricultural and Biological Sciences › Food Science › Probiotics and Fermented Foods
- Keywords
- gut microbiota, infant gut microbiota, breastfeeding, weaning, maternal microbiota
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