Diet and Feeding Pattern Affect the Diurnal Dynamics of the Gut Microbiome

vegan: Community Ecology Package

Oksanen, J., Simpson, G. L., Blanchet, F. G., Kindt, R., Legendre, P., Minchin, P. R., O’Hara, R. B., Sólymos, P., Stevens, M. H. H., Szöcs, E., et al. (2001) · doi:10.32614/cran.package.vegan · Cited by 27,099

UPARSE: highly accurate OTU sequences from microbial amplicon reads

Edgar, R. C. (2013) · Nature Methods · doi:10.1038/nmeth.2604 · Cited by 16,770

An obesity-associated gut microbiome with increased capacity for energy harvest

Turnbaugh, P. J., Ley, R. E., Mahowald, M. A., Magrini, V., Mardis, E. R., & Gordon, J. I. (2006) · Nature · doi:10.1038/nature05414 · Cited by 12,444

Diet rapidly and reproducibly alters the human gut microbiome

David, L. A., Maurice, C. F., Carmody, R. N., Gootenberg, D. B., Button, J. E., Wolfe, B. E., Ling, A. V., Devlin, A. S., Varma, Y., Fischbach, M. A., et al. (2014) · Nature · doi:10.1038/nature12820 · Cited by 10,100

A core gut microbiome in obese and lean twins

Turnbaugh, P. J., Hamady, M., Yatsunenko, T., Cantarel, B. L., Duncan, A., Ley, R. E., Sogin, M. L., Jones, W. J., Roe, B. A., Affourtit, J. P., et al. (2009) · Nature · doi:10.1038/nature07540 · Cited by 7,823

Human gut microbiome viewed across age and geography

Yatsunenko, T., Rey, F. E., Manary, M. J., Trehan, I., Dominguez-Bello, M. G., Contreras, M., Magris, M., Hidalgo, G., Baldassano, R. N., Anokhin, A. P., et al. (2012) · Nature · doi:10.1038/nature11053 · Cited by 7,815

Linking long-term dietary patterns with gut microbial enterotypes

Wu, G. D., Chen, J., Hoffmann, C., Bittinger, K., Chen, Y.-Y., Keilbaugh, S. A., Bewtra, M., Knights, D., Walters, W. A., Knight, R., et al. (2011) · Science · doi:10.1126/science.1208344 · Cited by 6,513

Obesity alters gut microbial ecology

Ley, R. E., Bäckhed, F., Turnbaugh, P., Lozupone, C. A., Knight, R. D., & Gordon, J. I. (2005) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0504978102 · Cited by 6,176

Targeting the intestinal circadian clock by meal timing ameliorates gastrointestinal inflammation

Niu, Y., Heddes, M., Altaha, B., Birkner, M., Kleigrewe, K., Meng, C., Haller, D., & Kießling, S. (2024) · Cellular and Molecular Immunology · doi:10.1038/s41423-024-01189-z · Cited by 73

Feeding Rapidly Alters Microbiome Composition and Gene Transcription in the Clownfish Gut

Parris, D. J., Morgan, M. M., & Stewart, F. J. (2018) · Applied and Environmental Microbiology · doi:10.1128/aem.02479-18 · Cited by 71

Beneficial Effects of Intermittent Fasting: A Narrative Review

Song, D.-K., & Kim, Y.-W. (2023) · Journal of Yeungnam Medical Science · doi:10.12701/jyms.2022.00010 · Cited by 69

High sucrose diet-induced dysbiosis of gut microbiota promotes fatty liver and hyperlipidemia in rats

Sun, S., Araki, Y., Hanzawa, F., Umeki, M., Kojima, T., Nishimura, N., Ikeda, S., Mochizuki, S., & Oda, H. (2021) · The Journal of Nutritional Biochemistry · doi:10.1016/j.jnutbio.2021.108621 · Cited by 69

Modulation of Immune Responses by Nutritional Ligands of Aryl Hydrocarbon Receptor

de Juan, A., & Segura, É. (2021) · Frontiers in Immunology · doi:10.3389/fimmu.2021.645168 · Cited by 71

Brain–Gut–Microbiome Interactions and Intermittent Fasting in Obesity

Frank, J., Gupta, A., Osadchiy, V., & Mayer, E. A. (2021) · Nutrients · doi:10.3390/nu13020584 · Cited by 68

Time restricted feeding and mental health: a review of possible mechanisms on affective and cognitive disorders

Currenti, W., Godos, J., Castellano, S., Mogavero, M. P., Ferri, R., Caraci, F., Grosso, G., & Galvano, F. (2020) · International Journal of Food Sciences and Nutrition · doi:10.1080/09637486.2020.1866504 · Cited by 67

Dietary strategies with anti-aging potential: Dietary patterns and supplements

Duan, H., Pan, J., Guo, M., Li, J., Yu, L., & Fan, L. (2022) · Food Research International · doi:10.1016/j.foodres.2022.111501 · Cited by 72

Amino acid supplements and metabolic health: a potential interplay between intestinal microbiota and systems control

Bifari, F., Ruocco, C., Decimo, I., Fumagalli, G. F., Valerio, A., & Nisoli, E. (2017) · Genes & Nutrition · doi:10.1186/s12263-017-0582-2 · Cited by 70

Linking circadian rhythms to microbiome-gut-brain axis in aging-associated neurodegenerative diseases

Cheng, W., Ho, J. Y. S., & Chang, R. C. (2022) · Ageing Research Reviews · doi:10.1016/j.arr.2022.101620 · Cited by 71

Mode of action of Akkermansia muciniphila in the intestinal dialogue: role of extracellular proteins, metabolites and cell envelope components

Segers, A., & de Vos, W. M. (2023) · Microbiome Research Reports · doi:10.20517/mrr.2023.05 · Cited by 69

Minimizing confounders and increasing data quality in murine models for studies of the gut microbiome

Miyoshi, J., Leone, V., Nobutani, K., Musch, M. W., Martinez, K., Wang, Y., Miyoshi, S., Bobe, A. M., Eren, A. M., & Chang, E. B. (2018) · PeerJ · doi:10.7717/peerj.5166 · Cited by 66

Oolong Tea Polyphenols Ameliorate Circadian Rhythm of Intestinal Microbiome and Liver Clock Genes in Mouse Model

Guo, T., Ho, C., Zhang, X., Cao, J., Wang, H., Shao, X., Pan, D., & Wu, Z. (2019) · Journal of Agricultural and Food Chemistry · doi:10.1021/acs.jafc.9b04869 · Cited by 66

Chrononutrition—When We Eat Is of the Essence in Tackling Obesity

Ahluwalia, M. K. (2022) · Nutrients · doi:10.3390/nu14235080 · Cited by 76

The Dimension of Time in Host-Microbiome Interactions

Uhr, G. T., Dohnalová, L., & Thaiss, C. A. (2019) · mSystems · doi:10.1128/msystems.00216-18 · Cited by 70

Circadian Coordination of Antimicrobial Responses

Tognini, P., Thaiss, C. A., Elinav, E., & Sassone‐Corsi, P. (2017) · Cell Host & Microbe · doi:10.1016/j.chom.2017.07.007 · Cited by 65

Oncobiosis and Microbial Metabolite Signaling in Pancreatic Adenocarcinoma

Kiss, B., Mikó, E., Sebő, É., Tóth, J., Ujlaki, G., Szabó, J., Uray, K., Bai, P., & Árkosy, P. (2020) · Cancers · doi:10.3390/cancers12051068 · Cited by 66

Gut microbiota modulation as a possible mediating mechanism for fasting-induced alleviation of metabolic complications: a systematic review

Angoorani, P., Ejtahed, H., Hasani‐Ranjbar, S., Siadat, S. D., Soroush, A. R., & Larijani, B. A. (2021) · Nutrition & Metabolism · doi:10.1186/s12986-021-00635-3 · Cited by 70

Circadian Disruption and Mental Health: The Chronotherapeutic Potential of Microbiome-Based and Dietary Strategies

Codoñer‐Franch, P., Gombert, M., Martínez-Raga, J., & Cénit, M. C. (2023) · International Journal of Molecular Sciences · doi:10.3390/ijms24087579 · Cited by 74

Microbiota and body weight control: Weight watchers within?

Boscaini, S., Leigh, S., Lavelle, A., García‐Cabrerizo, R., Lipuma, T., Clarke, G. A., Schellekens, H., & Cryan, J. F. (2021) · Molecular Metabolism · doi:10.1016/j.molmet.2021.101427 · Cited by 67

Intermittent fasting modulates the intestinal microbiota and improves obesity and host energy metabolism

Hu, X., Xia, K., Dai, M., Han, X.-F., Yuan, P., Liu, J., Liu, S., Jia, F., Chen, J., Jiang, F., et al. (2023) · npj Biofilms and Microbiomes · doi:10.1038/s41522-023-00386-4 · Cited by 64

Inter-Individual Differences in the Oral Bacteriome Are Greater than Intra-Day Fluctuations in Individuals

Sato, Y., Yamagishi, J., Yamashita, R., Shinozaki, N. O., Ye, B., Yamada, T., Yamamoto, M. P., Nagasaki, M., & Tsuboi, A. (2015) · PLoS ONE · doi:10.1371/journal.pone.0131607 · Cited by 66

Epigenetics of the molecular clock and bacterial diversity in bipolar disorder

Bengesser, S., Mörkl, S., Painold, A., Dalkner, N., Birner, A., Fellendorf, F. T., Platzer, M., Queissner, R., Hamm, C., Maget, A., et al. (2018) · Psychoneuroendocrinology · doi:10.1016/j.psyneuen.2018.11.009 · Cited by 65

Diversity and Composition of Rumen Bacteria, Fungi, and Protozoa in Goats and Sheep Living in the Same High-Altitude Pasture

Suo, L., Zhang, C., Zhang, K., Ba, G., De, J., Ciren, D., Cuoji, A., Wang, X., & Wu, Y. (2020) · Animals · doi:10.3390/ani10020186 · Cited by 67

Circadian Rhythms and Melatonin Metabolism in Patients With Disorders of Gut-Brain Interactions

Fowler, S., Hoedt, E. C., Talley, N. J., Keely, S., & Burns, G. L. (2022) · Frontiers in Neuroscience · doi:10.3389/fnins.2022.825246 · Cited by 62

Crosstalk between circadian rhythms and the microbiota

Pearson, J. A., Wong, F. S., & Li, W. (2020) · Immunology · doi:10.1111/imm.13278 · Cited by 60

Behavioral Microbiomics: A Multi-Dimensional Approach to Microbial Influence on Behavior

Wong, A. C.-N., Holmes, A., Ponton, F., Lihoreau, M., Wilson, K., Raubenheimer, D., & Simpson, S. J. (2015) · Frontiers in Microbiology · doi:10.3389/fmicb.2015.01359 · Cited by 61

How poverty affects diet to shape the microbiota and chronic disease

Harrison, C. A., & TAREN, D. L. (2017) · Nature reviews. Immunology · doi:10.1038/nri.2017.121 · Cited by 65

Quantification of Bacterial Metabolic Activities in the Gut by d ‐Amino Acid‐Based In Vivo Labeling

Lin, L., Song, J. T., Du, Y., Wu, Q., Gao, J., Song, Y., Yang, C. J., & Wang, W. (2020) · Angewandte Chemie International Edition · doi:10.1002/anie.202004703 · Cited by 61

Circadian Rhythms and the Gastrointestinal Tract: Relationship to Metabolism and Gut Hormones

Martchenko, A., Martchenko, S. E., Biancolin, A. D., & Brubaker, P. L. (2020) · Endocrinology · doi:10.1210/endocr/bqaa167 · Cited by 61

An overview of host‐derived molecules that interact with gut microbiota

Zhang, C., Liu, H., Sun, L., Wang, Y., Chen, X., Du, J., Sjöling, Å., Yao, J., & Wu, S. (2023) · iMeta · doi:10.1002/imt2.88 · Cited by 62

A microbial metabolite inhibits the HIF-2α-ceramide pathway to mediate the beneficial effects of time-restricted feeding on MASH

Zhang, Y., Wang, X., Lin, J., Liu, J., Wang, K., Nie, Q., Ye, C., Sun, L., Ma, Y., Qu, R., et al. (2024) · Cell Metabolism · doi:10.1016/j.cmet.2024.07.004 · Cited by 66

Mood‐related central and peripheral clocks

Ketchesin, K. D., Becker‐Krail, D. D., & McClung, C. A. (2018) · European Journal of Neuroscience · doi:10.1111/ejn.14253 · Cited by 67

Goals in Nutrition Science 2020-2025

Bassaganya-Riera, J., Berry, E. M., Blaak, E. E., Burlingame, B., le Coutre, J., van Eden, W., El‐Sohemy, A., German, J. B., Knorr, D., Lacroix, C., et al. (2021) · Frontiers in Nutrition · doi:10.3389/fnut.2020.606378 · Cited by 70

The implication of gut microbiota in recovery from gastrointestinal surgery

Zheng, Z., Hu, Y., Tang, J., Xu, W., Zhu, W., & Zhang, W. (2023) · Frontiers in Cellular and Infection Microbiology · doi:10.3389/fcimb.2023.1110787 · Cited by 68

Mechanisms for the biological activity of Gastrodia elata Blume and its constituents: A comprehensive review on sedative-hypnotic, and antidepressant properties

Zhou, H., Lu, S.-Z., Yu, Z.-S., Zhang, J., & Mei, Z. (2023) · Phytomedicine · doi:10.1016/j.phymed.2023.155251 · Cited by 61

Effects of Feeding Management on the Equine Cecal Microbiota

Venable, E. B., Fenton, K. A., Braner, V. M., Reddington, C. E., Halpin, M. J., Heitz, S. A., Francis, J., Gulson, N. A., Goyer, C. L., Bland, S. D., et al. (2016) · Journal of Equine Veterinary Science · doi:10.1016/j.jevs.2016.09.010 · Cited by 63

Circadian GLP-1 Secretion in Mice Is Dependent on the Intestinal Microbiome for Maintenance of Diurnal Metabolic Homeostasis

Martchenko, S. E., Martchenko, A., Cox, B., Naismith, K., Waller, A. S., Gurges, P., Sweeney, M. E., Philpott, D. J., & Brubaker, P. L. (2020) · Diabetes · doi:10.2337/db20-0262 · Cited by 65

Circadian disruption-induced metabolic syndrome in mice is ameliorated by oat β-glucan mediated by gut microbiota

Cheng, W., Lam, K., Li, X., Kong, A. P. S., & Cheung, P. C. K. (2021) · Carbohydrate Polymers · doi:10.1016/j.carbpol.2021.118216 · Cited by 62

Intermittent fasting and cardiovascular health: a circadian rhythm-based approach

Zhang, J., Chen, Y., Zhong, Y., Wang, Y., Huang, H., Xu, W. L., Pan, W., Chen, L., Zhu, Y., Bischof, E. Y., et al. (2025) · 中国科学通报：英文版 · doi:10.1016/j.scib.2025.05.017 · Cited by 61

Melatonin–Microbiome Two-Sided Interaction in Dysbiosis-Associated Conditions

Ieșanu, M. I., Zahiu, C. D. M., Dogaru, I.-A., Chiţimuș, D. M., Pîrcălăbioru, G. G., Voiculescu, S. E., Isac, S., Galoş, F., Pavel, B., O’Mahony, S. M., et al. (2022) · Antioxidants · doi:10.3390/antiox11112244 · Cited by 63

Targeting Dysbiosis for the Treatment of Liver Disease

Anand, G. S., Zarrinpar, A., & Loomba, R. S. (2016) · Seminars in Liver Disease · doi:10.1055/s-0035-1571276 · Cited by 59

Targeting the gut microbiota by dietary nutrients: A new avenue for human health

Li, D., Wang, P., Wang, P., Hu, X., & Chen, F. (2017) · Critical Reviews in Food Science and Nutrition · doi:10.1080/10408398.2017.1363708 · Cited by 60

The Circadian Clock as an Essential Molecular Link Between Host Physiology and Microorganisms

Murakami, M., & Tognini, P. (2020) · Frontiers in Cellular and Infection Microbiology · doi:10.3389/fcimb.2019.00469 · Cited by 58

Late‐Night Eating‐Induced Physiological Dysregulation and Circadian Misalignment Are Accompanied by Microbial Dysbiosis

Ni, Y., Wu, L., Jiang, J., Yang, T., Wang, Z., Ma, L., Zheng, L., Yang, X., Wu, Z., & Fu, Z. (2019) · Molecular Nutrition & Food Research · doi:10.1002/mnfr.201900867 · Cited by 60

Methionine Restriction Regulates Cognitive Function in High‐Fat Diet‐Fed Mice: Roles of Diurnal Rhythms of SCFAs Producing‐ and Inflammation‐Related Microbes

Wang, L., Ren, B., Yan, H., Chu, C., Zhao, Z., Zhang, Y., Zhao, B., Shi, R., Ren, J., Dai, X., et al. (2020) · Molecular Nutrition & Food Research · doi:10.1002/mnfr.202000190 · Cited by 57

Sleep and circadian disruption and the gut microbiome-possible links to dysregulated metabolism

Withrow, D., Bowers, S. J., Depner, C. M., González, A., Reynolds, A. C., & Wright, K. P. (2020) · Current Opinion in Endocrine and Metabolic Research · doi:10.1016/j.coemr.2020.11.009 · Cited by 58

The impact of intermittent fasting on gut microbiota: a systematic review of human studies

Paukkonen, I., Törrönen, E.-N., Lok, J., Schwab, U., & El-Nezami, H. S. (2024) · Frontiers in Nutrition · doi:10.3389/fnut.2024.1342787 · Cited by 63

Metagenomic analysis reveals the signature of gut microbiota associated with human chronotypes

Carasso, S., Fishman, B., Lask, L. S., Shochat, T., Geva‐Zatorsky, N., & Tauber, E. (2021) · The FASEB Journal · doi:10.1096/fj.202100857rr · Cited by 57

The Oscillating Gut Microbiome and Its Effects on Host Circadian Biology

Litichevskiy, L., & Thaiss, C. A. (2022) · Annual Review of Nutrition · doi:10.1146/annurev-nutr-062320-111321 · Cited by 58

Circadian rhythms and pancreas physiology: A review

Chan, K., Wong, F. S., & Pearson, J. A. (2022) · Frontiers in Endocrinology · doi:10.3389/fendo.2022.920261 · Cited by 65

Time of sample collection is critical for the replicability of microbiome analyses

Allaband, C., Lingaraju, A., Ramos, S. F., Kumar, T., Javaheri, H., Tiu, M. D., Machado, A. C. D., Richter, R. A., Elijah, E. O., Haddad, G. G., et al. (2024) · Nature Metabolism · doi:10.1038/s42255-024-01064-1 · Cited by 61

The melatonin-sensitive circadian clock of the enteric bacteriumEnterobacter aerogenes

Paulose, J. K., & Cassone, V. M. (2016) · Gut Microbes · doi:10.1080/19490976.2016.1208892 · Cited by 56

Relationship between diet, the gut microbiota, and brain function

Tengeler, A. C., Kozicz, T., & Kiliaan, A. J. (2018) · Nutrition Reviews · doi:10.1093/nutrit/nuy016 · Cited by 61

Time-restricted feeding protects the blood pressure circadian rhythm in diabetic mice

Hou, T., Su, W., Duncan, M. J., Vsevolozhskaya, O. A., Guo, Z., & Gong, M. C. (2021) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.2015873118 · Cited by 60

Intermittent fasting contributes to aligned circadian rhythms through interactions with the gut microbiome

Daas, M. C., & de Roos, N. M. (2021) · Beneficial Microbes · doi:10.3920/bm2020.0149 · Cited by 58

Effects of Ramadan and Non-ramadan Intermittent Fasting on Gut Microbiome

Mousavi, S. N., Rayyani, E., Heshmati, J., Tavasolian, R., & Rahimlou, M. (2022) · Frontiers in Nutrition · doi:10.3389/fnut.2022.860575 · Cited by 57

Gut microbes and the liver circadian clock partition glucose and lipid metabolism

Frazier, K., Manzoor, S. S., Carroll, K., DeLeon, O., Miyoshi, S., Miyoshi, J., George, M. S., Tan, A., Chrisler, E. A., Izumo, M., et al. (2023) · Journal of Clinical Investigation · doi:10.1172/jci162515 · Cited by 58

Interactions between Gut Microbiota, Host Circadian Rhythms, and Metabolic Diseases

Zhang, M., Zhou, C., Li, X., Li, H., Han, Q., Chen, Z., Tang, W., & Yin, J. (2025) · Advances in Nutrition · doi:10.1016/j.advnut.2025.100416 · Cited by 58

Loss of Diurnal Oscillatory Rhythms in Gut Microbiota Correlates with Changes in Circulating Metabolites in Type 2 Diabetic db/db Mice

Beli, E., Prabakaran, S., Krishnan, P., Evans‐Molina, C., & Grant, M. B. (2019) · Nutrients · doi:10.3390/nu11102310 · Cited by 56

Time of Feeding Alters Obesity-Associated Parameters and Gut Bacterial Communities, but Not Fungal Populations, in C57BL/6 Male Mice

van der Merwe, M., Sharma, S., Caldwell, J. L., Smith, N. J., Gomes, C., Bloomer, R. J., Buddington, R. K., & Pierre, J. F. (2019) · Current Developments in Nutrition · doi:10.1093/cdn/nzz145 · Cited by 51

Time-restricted feeding regulates molecular mechanisms with involvement of circadian rhythm to prevent metabolic diseases

Zeb, F., Wu, X., Fatima, S., Zaman, M. H., Khan, S. A., Safdar, M., Alam, I., & Feng, Q. (2021) · Nutrition · doi:10.1016/j.nut.2021.111244 · Cited by 51

Differential effects of diet composition and timing of feeding behavior on rat brown adipose tissue and skeletal muscle peripheral clocks

de Goede, P., Sen, S., Oosterman, J. E., Foppen, E., Jansen, R., la Fleur, S. E., Challet, É., & Kalsbeek, A. (2017) · Neurobiology of Sleep and Circadian Rhythms · doi:10.1016/j.nbscr.2017.09.002 · Cited by 51

Intermittent Hypoxia and Hypercapnia Alter Diurnal Rhythms of Luminal Gut Microbiome and Metabolome

Allaband, C., Lingaraju, A., Martino, C., Russell, B. J., Tripathi, A., Poulsen, O., Machado, A. C. D., Zhou, D., Xue, J., Elijah, E. O., et al. (2021) · mSystems · doi:10.1128/msystems.00116-21 · Cited by 52

Impact of Time-Restricted Feeding and Dawn-to-Sunset Fasting on Circadian Rhythm, Obesity, Metabolic Syndrome, and Nonalcoholic Fatty Liver Disease

Mindikoglu, A. L., Opekun, A. R., Gagan, S. K., & Devaraj, S. (2017) · Gastroenterology Research and Practice · doi:10.1155/2017/3932491 · Cited by 49

Melatonin as a Mediator of the Gut Microbiota–Host Interaction: Implications for Health and Disease

Bonmatí‐Carrión, M., & Rol, M. A. (2023) · Antioxidants · doi:10.3390/antiox13010034 · Cited by 57

Cardioprotective Properties of Phenolic Compounds: A Role for Biological Rhythms

Torres‐Fuentes, C., Suárez, M., Aragonès, G., Mulero, M., Ávila‐Román, J., Arola‐Arnal, A., Salvadó, M. J., Arola, L., Bravo, F. I., & Muguerza, B. (2022) · Molecular Nutrition & Food Research · doi:10.1002/mnfr.202100990 · Cited by 52

Association Between the Gut Microbiome and Their Metabolites With Human Blood Pressure Variability

Dinakis, E., Nakai, M. E., Gill, P. A., Ribeiro, R. V., Yiallourou, S. R., Sata, Y., Muir, J. G., Carrington, M. J., Head, G. A., Kaye, D. M., et al. (2022) · Hypertension · doi:10.1161/hypertensionaha.122.19350 · Cited by 50

Challenges in the construction of knowledge bases for human microbiome-disease associations

Badal, V. D., Wright, D., Katsis, Y., Kim, H., Swafford, A. D.-E., Knight, R. D., & Hsu, C. (2019) · Microbiome · doi:10.1186/s40168-019-0742-2 · Cited by 49

Fasting: How to Guide

Attinà, A., Leggeri, C., Paroni, R., Pivari, F., Dei Cas, M., Mingione, A., Dri, M., Marchetti, M., & Di Renzo, L. (2021) · Nutrients · doi:10.3390/nu13051570 · Cited by 47

The effect of calorie intake, fasting, and dietary composition on metabolic health and gut microbiota in mice

Zhang, Z., Chen, X., Loh, Y. J., Yang, X., & Zhang, C. (2021) · BMC Biology · doi:10.1186/s12915-021-00987-5 · Cited by 46

Metabolic reconstitution of germ-free mice by a gnotobiotic microbiota varies over the circadian cycle

Hoces, D., Lan, J., Sun, W., Geiser, T., Stäubli, M. L., Barazzone, E. C., Arnoldini, M., Challa, T. D., Klug, M., Kellenberger, A., et al. (2022) · PLoS Biology · doi:10.1371/journal.pbio.3001743 · Cited by 49

Regulation of Mammalian Physiology by Interconnected Circadian and Feeding Rhythms

Atger, F., Mauvoisin, D., Weger, B. D., Gobet, C., & Gachon, F. (2017) · Frontiers in Endocrinology · doi:10.3389/fendo.2017.00042 · Cited by 46

Are There Circadian Clocks in Non-Photosynthetic Bacteria?

Sartor, F., Eelderink-Chen, Z., Aronson, B., Bosman, J., Hibbert, L. E., Dodd, A. N., Kovács, Á. T., & Merrow, M. W. (2019) · Biology · doi:10.3390/biology8020041 · Cited by 46

Diurnal Timing Dependent Alterations in Gut Microbial Composition Are Synchronously Linked to Salt-Sensitive Hypertension and Renal Damage

Chakraborty, S., Mandal, J., Cheng, X., Galla, S., Hindupur, A., Saha, P., Yeoh, B. S., Mell, B., Yeo, J., Vijay–Kumar, M., et al. (2020) · Hypertension · doi:10.1161/hypertensionaha.120.14830 · Cited by 45

For Whom the Clock Ticks: Clinical Chronobiology for Infectious Diseases

Diallo, A. B., Coiffard, B., Léone, M., Mezouar, S., & Mège, J. (2020) · Frontiers in Immunology · doi:10.3389/fimmu.2020.01457 · Cited by 47

Missing puzzle pieces of time-restricted-eating (TRE) as a long-term weight-loss strategy in overweight and obese people? A systematic review and meta-analysis of randomized controlled trials

Chen, J.-H., Lu, L. W., Ge, Q., Feng, D., Yu, J., Liu, B., Zhang, R., Zhang, X., Ouyang, C., & Chen, F. (2023) · Critical Reviews in Food Science and Nutrition · doi:10.1080/10408398.2021.1974335 · Cited by 45

Reduced meal frequency alleviates high-fat diet-induced lipid accumulation and inflammation in adipose tissue of pigs under the circumstance of fixed feed allowance

Yan, H., Cao, S., Li, Y., Zhang, H., & Liu, J. (2019) · European Journal of Nutrition · doi:10.1007/s00394-019-01928-3 · Cited by 47

New Insights into the Diurnal Rhythmicity of Gut Microbiota and Its Crosstalk with Host Circadian Rhythm

Wang, H., Zhang, H., & Su, Y. (2022) · Animals · doi:10.3390/ani12131677 · Cited by 48

Circadian Regulation of Metabolism: Commitment to Health and Diseases

Sato, T., & Sato, S. (2023) · Endocrinology · doi:10.1210/endocr/bqad086 · Cited by 55

Rapid modulation of gut microbiota composition by hypothalamic circuits in mice

Toledo, M., Martínez-Martínez, S., Hul, M. V., Laudo, B., Eyre, E., Pelicaen, R., Puel, A., Altirriba, J., Gómez-Valadés, A. G., Inderhees, J., et al. (2025) · Nature Metabolism · doi:10.1038/s42255-025-01280-3 · Cited by 46

Modeling approaches for probing cross-feeding interactions in the human gut microbiome

Saa, P. A., Urrutia, A., Silva, C., Martín, A. J. M., & Garrido, D. A. (2021) · Computational and Structural Biotechnology Journal · doi:10.1016/j.csbj.2021.12.006 · Cited by 49

Relationship between Dietary Polyphenols and Gut Microbiota: New Clues to Improve Cognitive Disorders, Mood Disorders and Circadian Rhythms

Liu, S., Cheng, L., Liu, Y., Zhan, S., Wu, Z., & Zhang, X. (2023) · Foods · doi:10.3390/foods12061309 · Cited by 46

The diverse roles of the circadian clock in cancer

Fortin, B. M., Mahieu, A. L., Fellows, R. C., Kang, Y., Lewis, A. N., Ead, A., Lamia, K. A., Cao, Y., Pannunzio, N. R., & Masri, S. (2025) · Nature Cancer · doi:10.1038/s43018-025-00981-8 · Cited by 49

Sharpening Precision Medicine by a Thorough Interrogation of Metabolic Individuality

Beebe, K. D., & Kennedy, A. D. (2016) · Computational and Structural Biotechnology Journal · doi:10.1016/j.csbj.2016.01.001 · Cited by 44

Distinctive gut microbial community structure in both the wild and farmed Swan goose (Anser cygnoides)

Wang, W., Zheng, S., Sharshov, K., Cao, J., Sun, H., Yang, F., Wang, X., & Li, L. (2016) · Journal of Basic Microbiology · doi:10.1002/jobm.201600155 · Cited by 43

Biological rhythms, chronodisruption and chrono-enhancement: The role of physical activity as synchronizer in correcting steroids circadian rhythm in metabolic dysfunctions and cancer

Vitale, J. A., Lombardi, G., Weydahl, A., & Banfi, G. (2018) · Chronobiology International · doi:10.1080/07420528.2018.1475395 · Cited by 43

Prebiotic supplementation (beta-glucan and inulin) attenuates circadian misalignment induced by shifted light-dark cycle in mice by modulating circadian gene expression

Cheng, W., Lam, K., Kong, A. P. S., & Cheung, P. C. K. (2020) · Food Research International · doi:10.1016/j.foodres.2020.109437 · Cited by 44

Circadian dynamics of the teleost skin immune-microbiome interface

Ellison, A., Wilcockson, D. C., & Cable, J. (2021) · Microbiome · doi:10.1186/s40168-021-01160-4 · Cited by 44

Integration of Circadian and Metabolic Control of Reproductive Function

Evans, M. C., & Anderson, G. M. (2018) · Endocrinology · doi:10.1210/en.2018-00691 · Cited by 41

Diet, gut microbiota composition and feeding behavior

Kim, J. S., & Serre, C. B. D. L. (2018) · Physiology & Behavior · doi:10.1016/j.physbeh.2018.03.026 · Cited by 40

The Microbiome as a Circadian Coordinator of Metabolism

Alvarez, Y., Glotfelty, L., Blank, N., Dohnalová, L., & Thaiss, C. A. (2020) · Endocrinology · doi:10.1210/endocr/bqaa059 · Cited by 39

The beneficial effects of intermittent fasting: an update on mechanism, and the role of circadian rhythm and gut microbiota

Hu, D., Xie, Z., Ye, Y., Bahijri, S., & Chen, M. (2020) · HepatoBiliary Surgery and Nutrition · doi:10.21037/hbsn-20-317 · Cited by 45

Technological tools and strategies for culturing human gut microbiota in engineered in vitro models

Sardelli, L., Perottoni, S., Tunesi, M., Boeri, L., Fusco, F., Petrini, P., Albani, D., & Giordano, C. (2021) · Biotechnology and Bioengineering · doi:10.1002/bit.27816 · Cited by 43

The effects of intermittent fasting regimens in middle-age and older adults: Current state of evidence

Anton, S. D., Ezzati, A., Witt, D., McLaren, C., & Vial, P. (2021) · Experimental Gerontology · doi:10.1016/j.exger.2021.111617 · Cited by 41

"Circadian misalignment and the gut microbiome. A bidirectional relationship triggering inflammation and metabolic disorders"- a literature review

Mashaqi, S., & Gozal, D. (2020) · Sleep Medicine · doi:10.1016/j.sleep.2020.03.020 · Cited by 40

Irregular sleep and cardiometabolic risk: Clinical evidence and mechanisms

Zhang, C., & Qin, G. (2023) · Frontiers in Cardiovascular Medicine · doi:10.3389/fcvm.2023.1059257 · Cited by 43

Disruption of the intestinal clock drives dysbiosis and impaired barrier function in colorectal cancer

Fellows, R. C., Chun, S. K., Larson, N., Fortin, B. M., Mahieu, A. L., Song, W. A., Seldin, M. M., Pannunzio, N. R., & Masri, S. (2024) · Science Advances · doi:10.1126/sciadv.ado1458 · Cited by 42

Microbial signatures and therapeutic strategies in neurodegenerative diseases

Rob, M., Yousef, M., Lakshmanan, A. P., Mahboob, A., Terranegra, A., & Châari, A. (2025) · Biomedicine & Pharmacotherapy · doi:10.1016/j.biopha.2025.117905 · Cited by 43

Effects of grape pomace and seed polyphenol extracts on the recovery of gut microbiota after antibiotic treatment in high‐fat diet‐fed mice

Lu, F. L., Liu, F., Zhou, Q., Hu, X., & Zhang, Y. (2019) · Food Science & Nutrition · doi:10.1002/fsn3.1141 · Cited by 39

Timed high-fat diet feeding restores small bowel circadian rhythms

Tolba, S. A., & Leone, V. (2022) · Nature Reviews Endocrinology · doi:10.1038/s41574-022-00759-3 · Cited by 6

The microbiome interacts with the circadian clock and dietary composition to regulate metabolite cycling in the gutPreprint

Zhang, Y., Li, Y., Noya, S. B., & Sehgal, A. (2024) · eLife · doi:10.7554/elife.97130.1 · Cited by 3

The microbiome interacts with the circadian clock and dietary composition to regulate metabolite cycling in the Drosophila gutPreprint

Zhang, Y., Noya, S. B., Li, Y., Fang, J., & Sehgal, A. (2024) · eLife · doi:10.7554/elife.97130 · Cited by 6

Daily eating patterns and their impact on health and disease

Zarrinpar, A., Chaix, A., & Panda, S. (2016) · Trends in Endocrinology & Metabolism · doi:10.1016/j.tem.2015.11.007 · Cited by 263

Targeted induction of gut-microbial metabolism acutely affects feeding patterns and clock gene expression in the hostPreprint

Greter, G., Moresi, C., Oswald, S., d’Oplinter, A. D. W., Künzli, D., Barazzone, E. C., Lan, J., Slack, E. M. C., & Arnoldini, M. (2023) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2023.06.20.545777