Chromatin Regulation by BAF170 Controls Cerebral Cortical Size and Thickness
Open accessAbstract
Increased cortical size is essential to the enhanced intellectual capacity of primates during mammalian evolution. The mechanisms that control cortical size are largely unknown. Here, we show that mammalian BAF170, a subunit of the chromatin remodeling complex mSWI/SNF, is an intrinsic factor that controls cortical size. We find that conditional deletion of BAF170 promotes indirect neurogenesis by increasing the pool of intermediate progenitors (IPs) and results in an enlarged cortex, whereas cortex-specific BAF170 overexpression results in the opposite phenotype. Mechanistically, BAF170 competes with BAF155 subunit in the BAF complex, affecting euchromatin structure and thereby modulating the binding efficiency of the Pax6/REST-corepressor complex to Pax6 target genes that regulate the generation of IPs and late cortical progenitors. Our findings reveal a molecular mechanism mediated by the mSWI/SNF chromatin-remodeling complex that controls cortical architecture.
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SMARCC2 encodes a subunit of the chromatin remodeling complex mSWI/SNF that directly controls neurogenesis in the developing cerebral cortex by regulating its size and thickness.
“Interestingly, one positively selected site was also detected in SMARCC2, which encodes a subunit of the chromatin remodeling complex mSWI/SNF that directly controls neurogenesis in the developing cerebral cortex by regulating its size and thickness44.”
From Distinct selective forces and Neanderthal introgression shaped genetic diversity at genes involved in neurodevelopmental disorders (2017) · cites this paper as [44]
The Abstract and Discussion identify BAF170 as an mSWI/SNF subunit that controls cortical neurogenesis, with consequences for cortical size and thickness. Our copy does not identify BAF170 as the product of SMARCC2, and it describes neurogenesis as affecting cortical dimensions rather than being controlled by them. (LLM, conf=0.84)
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Cites
The cell biology of neurogenesis
Götz, M., & Huttner, W. B. (2005) · Nature Reviews Molecular Cell Biology · doi:10.1038/nrm1739 · Cited by 2,130 · see citing works
Neuronal subtype specification in the cerebral cortex
Molyneaux, B. J., Arlotta, P., Menezes, J. R. L., & Macklis, J. D. (2007) · Nature reviews. Neuroscience · doi:10.1038/nrn2151 · Cited by 1,632 · see citing works
Proneural genes and the specification of neural cell types
Bertrand, N., Castro, D. S., & Guillemot, F. (2002) · Nature Reviews Neuroscience · doi:10.1038/nrn874 · Cited by 1,572 · see citing works
REST and Its Corepressors Mediate Plasticity of Neuronal Gene Chromatin throughout Neurogenesis
Ballas, N., Grunseich, C., Lu, D. D., Speh, J. C., & Mandel, G. (2005) · Cell · doi:10.1016/j.cell.2005.03.013 · Cited by 846 · see citing works
Patterns of neural stem and progenitor cell division may underlie evolutionary cortical expansion
Kriegstein, A., Noctor, S., & Martínez-Cerdeño, V. (2006) · Nature Reviews Neuroscience · doi:10.1038/nrn2008 · Cited by 738 · see citing works
Lessard, J., Wu, J. I., Ranish, J. A., Wan, M., Winslow, M. M., Staahl, B. T., Wu, H., Aebersold, R., Graef, I. A., & Crabtree, G. R. (2007) · Neuron · doi:10.1016/j.neuron.2007.06.019 · Cited by 735 · see citing works
Diversity and specialization of mammalian SWI/SNF complexes.Preprint
Wang, W., Xue, Y., Zhou, S., Kuo, A. C., Cairns, B. R., & Crabtree, G. R. (1996) · Genes & Development · doi:10.1101/gad.10.17.2117 · Cited by 707 · see citing works
Pax6 Controls Radial Glia Differentiation in the Cerebral Cortex
Götz, M., Stoykova, A., & Gruß, P. (1998) · Neuron · doi:10.1016/s0896-6273(00)80621-2 · Cited by 665 · see citing works
Self-citationhGFAP‐cre transgenic mice for manipulation of glial and neuronal function in vivo
Zhuo, L., Theis, M., Álvarez-Maya, I., Brenner, M., Willecke, K., & Messing, A. (2001) · genesis · doi:10.1002/gene.10008 · Cited by 660 · see citing works
Genetic targeting of principal neurons in neocortex and hippocampus of NEX-Cre mice
Goebbels, S., Bormuth, I., Bode, U., Hermanson, O., Schwab, M. H., & Nave, K. (2006) · genesis · doi:10.1002/dvg.20256 · Cited by 579 · see citing works
Ho, L., Ronan, J. L., Wu, J. I., Staahl, B. T., Chen, L., Kuo, A., Lessard, J. A., Nesvizhskii, A. I., Ranish, J. A., & Crabtree, G. R. (2009) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0812889106 · Cited by 554 · see citing works
NRSF/REST is required in vivo for repression of multiple neuronal target genes during embryogenesis
Chen, Z., Paquette, A. J., & Anderson, D. J. (1998) · Nature Genetics · doi:10.1038/2431 · Cited by 461 · see citing works
Hevner, R. F., Hodge, R. D., Daza, R. A. M., & Englund, C. (2006) · Neuroscience Research · doi:10.1016/j.neures.2006.03.004 · Cited by 438 · see citing works
Corepressor-Dependent Silencing of Chromosomal Regions Encoding Neuronal Genes
Lunyak, V. V., Burgess, R., Prefontaine, G. G., Nelson, C., Sze, S.-H., Chenoweth, J., Schwartz, P., Pevzner, P. A., Glass, C., Mandel, G., et al. (2002) · Science · doi:10.1126/science.1076469 · Cited by 416 · see citing works
Sansom, S. N., Griffiths, D. S., Faedo, A., Kleinjan, D., Ruan, Y., Smith, J. C., van Heyningen, V., Rubenstein, J. L. R., & Livesey, F. J. (2009) · PLoS Genetics · doi:10.1371/journal.pgen.1000511 · Cited by 401 · see citing works
Self-citationUnderstanding the Words of Chromatin Regulation
Wu, J. I., Lessard, J., & Crabtree, G. (2009) · Cell · doi:10.1016/j.cell.2009.01.009 · Cited by 384 · see citing works
Role of Intermediate Progenitor Cells in Cerebral Cortex Development
Pontious, A., Kowalczyk, T., Englund, C., & Hevner, R. F. (2008) · Developmental Neuroscience · doi:10.1159/000109848 · Cited by 378 · cited 2× · see citing works
“5 they contributemore significantly to generation of neurons with upper layer identities (UL, L4–L2) during late neurogenesis (Pontious et al., 2008).”
BackgroundChromatin-Remodeling Components of the BAF Complex Facilitate Reprogramming
Singhal, N., Graumann, J., Wu, G., Araúzo-Bravo, M. J., Han, D. W., Greber, B., Gentile, L., Mann, M., & Schöler, H. R. (2010) · Cell · doi:10.1016/j.cell.2010.04.037 · Cited by 378 · cited 2× · see citing works
“It has been shown that addition of BAF155 (alone or together with Brg1) enhances the reprogramming mediated by Oct4, Sox2, Klf4, and Myc in ES cells, suggesting that incorporation of BAF155 promotes a euchromatic chromatin state in the promoters of these genes, endowing a pluripotency (Singhal et al., 2010).”
BackgroundSessa, A., Mao, C., Hadjantonakis, A., Klein, W. H., & Broccoli, V. (2008) · Neuron · doi:10.1016/j.neuron.2008.09.028 · Cited by 372 · see citing works
Brahma links the SWI/SNF chromatin-remodeling complex with MeCP2-dependent transcriptional silencing
Kaipananickal, H., Chow, M. Z. Y., Baker, E. K., Pal, S., Bassal, S., Brasacchio, D., Wang, L., Craig, J. M., Jones, P. L., Sif, S., et al. (2005) · Nature Genetics · doi:10.1038/ng1516 · Cited by 305 · see citing works
Quinn, J. C., Molinek, M., Martynoga, B., Zaki, P. A., Faedo, A., Bulfone, A., Hevner, R. F., West, J. D., & Price, D. J. (2006) · Developmental Biology · doi:10.1016/j.ydbio.2006.08.035 · Cited by 223 · see citing works
Sahara, S., & O’Leary, D. D. M. (2009) · Neuron · doi:10.1016/j.neuron.2009.06.006 · Cited by 206 · see citing works
Wu, S.-X., Goebbels, S., Nakamura, K., Nakamura, K., Kometani, K., Minato, N., Kaneko, T., Nave, K.-A., & Tamamaki, N. (2005) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0508560102 · Cited by 198 · see citing works
REST Repression of Neuronal Genes Requires Components of the hSWI·SNF Complex
Battaglioli, E., Andrés, M. E., Rose, D. W., Chenoweth, J. G., Rosenfeld, M. G., Anderson, M. E., & Mandel, G. (2002) · Journal of Biological Chemistry · doi:10.1074/jbc.m205691200 · Cited by 187 · see citing works
BRIT1/MCPH1 links chromatin remodelling to DNA damage response
Peng, G., Yim, E.-K., Dai, H., Jackson, A. P., van der Burgt, I., Pan, M., Hu, R., Li, K., & Lin, S. (2009) · Nature Cell Biology · doi:10.1038/ncb1895 · Cited by 186 · see citing works
Yan, Z., Wang, Z., Sharova, L. V., Sharov, A. A., Ling, C., Piao, Y., Aiba, K., Matoba, R., Wang, W., & Ko, M. S. H. (2008) · Stem Cells · doi:10.1634/stemcells.2007-0846 · Cited by 168 · see citing works
Neurogenic Radial Glial Cells in Reptile, Rodent and Human: from Mitosis to Migration
Weissman, T. A. (2003) · Cerebral Cortex · doi:10.1093/cercor/13.6.550 · Cited by 158 · see citing works
ATP-dependent chromatin remodeling in neural development
Yoo, A. S. J., & Crabtree, G. R. (2009) · Current Opinion in Neurobiology · doi:10.1016/j.conb.2009.04.006 · Cited by 150 · see citing works
Tuoc, T., & Stoykova, A. (2008) · Genes & Development · doi:10.1101/gad.471708 · Cited by 115 · see citing works
Self-citationTuoc, T., Radyushkin, K., Tonchev, A. B., Piñon, M. C., Ashery‐Padan, R., Molnár, Z., Davidoff, M. S., & Stoykova, A. (2009) · Journal of Neuroscience · doi:10.1523/jneurosci.5669-08.2009 · Cited by 110 · see citing works
Self-citationRegulation of αA‐crystallin via Pax6, c‐Maf, CREB and a broad domain of lens‐specific chromatin
Yang, Y., Stopka, T., Golestaneh, N., Wang, Y., Wu, K., Li, A., Chauhan, B. K., Gao, C., Cveklová, K., Duncan, M. K., et al. (2006) · The EMBO Journal · doi:10.1038/sj.emboj.7601114 · Cited by 107 · see citing works
Pinto, L., Mader, M., Irmler, M., Gentilini, M., Santoni, F., Drechsel, D., Blum, R., Stahl, R., Bulfone, A., Malatesta, P., et al. (2008) · Molecular and cellular neurosciences · doi:10.1016/j.mcn.2008.01.012 · Cited by 105 · see citing works
Ochiai, W., Nakatani, S., Takahara, T., Kainuma, M., Masaoka, M., Minobe, S., Namihira, M., Nakashima, K., Sakakibara, A., Ogawa, M., et al. (2008) · Molecular and Cellular Neuroscience · doi:10.1016/j.mcn.2008.10.007 · Cited by 101 · see citing works
AP2γ regulates basal progenitor fate in a region- and layer-specific manner in the developing cortex
Pinto, L., Drechsel, D., Schmid, M.-T., Ninkovic, J., Irmler, M., Brill, M. S., Restani, L., Gianfranceschi, L., Cerri, C., Weber, S. N., et al. (2009) · Nature Neuroscience · doi:10.1038/nn.2399 · Cited by 100 · see citing works
Retinoic acid mediates Pax6 expression during in vitro differentiation of embryonic stem cells
Gajović, S., St‐Onge, L., Yokota, Y., & Gruß, P. (1998) · Differentiation · doi:10.1046/j.1432-0436.1998.6240187.x · Cited by 97 · see citing works
CoREST/LSD1 Control the Development of Pyramidal Cortical Neurons
Fuentes, P., Cánovas, J., Berndt, F. A., Noctor, S. C., & Manuel Kukuljan, P. (2011) · Cerebral Cortex · doi:10.1093/cercor/bhr218 · Cited by 86 · see citing works
Georgala, P. A., Manuel, M. N., & Price, D. J. (2010) · Cerebral Cortex · doi:10.1093/cercor/bhq061 · Cited by 69 · see citing works
Cux‐1 and Cux‐2 control the development of Reelin expressing cortical interneurons
Cubelos, B., Sebastián‐Serrano, Á., Kim, S., Redondo, J. M., Walsh, C. A., & Nieto, M. (2008) · Developmental Neurobiology · doi:10.1002/dneu.20626 · Cited by 52 · see citing works
Buscarlet, M., Perin, A., Laing, A. F., Brickman, J. M., & Stifani, S. (2008) · Journal of Biological Chemistry · doi:10.1074/jbc.m800722200 · Cited by 41 · see citing works
Er81is a downstream target of Pax6 in cortical progenitors
Tuoc, T., & Stoykova, A. (2008) · BMC Developmental Biology · doi:10.1186/1471-213x-8-23 · Cited by 35 · see citing works
Self-citationIn Vivo MRI of Altered Brain Anatomy and Fiber Connectivity in Adult Pax6 Deficient Mice
Boretius, S., Michaelis, T., Tammer, R., Ashery‐Padan, R., Frahm, J., & Stoykova, A. (2009) · Cerebral Cortex · doi:10.1093/cercor/bhp057 · Cited by 30 · see citing works
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Sorted by citations
Integrative functional genomic analyses implicate specific molecular pathways and circuits in autism
Parikshak, N. N., Luo, R., Zhang, A., Won, H., Lowe, J. K., Chandran, V., Horvath, S., & Geschwind, D. H. (2013) · Cell · doi:10.1016/j.cell.2013.10.031 · Cited by 1,039 · see citing works
Advancing the understanding of autism disease mechanisms through genetics
de la Torre-Ubieta, L., Won, H., Stein, J. L., & Geschwind, D. H. (2016) · Nature Medicine · doi:10.1038/nm.4071 · Cited by 827 · see citing works
Cortical Evolution: Judge the Brain by Its Cover
Geschwind, D. H., & Rakic, P. (2013) · Neuron · doi:10.1016/j.neuron.2013.10.045 · Cited by 519 · see citing works
The functional landscape of the human phosphoproteome
Ochoa, D., Jarnuczak, A. F., Viéitez, C., Gehre, M., Soucheray, M., Mateus, A., Kleefeldt, A. A., Hill, A., Garcia-Alonso, L., Stein, F., et al. (2020) · Nature Biotechnology · doi:10.1038/s41587-019-0344-3 · Cited by 491 · see citing works
Neurogenesis during development of the vertebrate central nervous system
Paridaen, J. T. M. L., & Huttner, W. Β. (2014) · EMBO Reports · doi:10.1002/embr.201438447 · Cited by 390 · see citing works
The outer subventricular zone and primate-specific cortical complexification
Dehay, C., Kennedy, H., & Kosik, K. S. (2015) · Neuron · doi:10.1016/j.neuron.2014.12.060 · Cited by 314 · see citing works
COMPASS and SWI/SNF complexes in development and disease
Cenik, B. K., & Shilatifard, A. (2020) · Nature Reviews Genetics · doi:10.1038/s41576-020-0278-0 · Cited by 269 · see citing works
ATP-dependent chromatin remodeling during mammalian development
Hota, S. K., & Bruneau, B. G. (2016) · Development · doi:10.1242/dev.128892 · Cited by 239 · see citing works
A Quantitative Framework to Evaluate Modeling of Cortical Development by Neural Stem Cells
Stein, J. L., de la Torre-Ubieta, L., Tian, Y., Parikshak, N. N., Hernández, I. A., Marchetto, M. C., Baker, D. K., Lu, D., Hinman, C. R., Lowe, J. K., et al. (2014) · Neuron · doi:10.1016/j.neuron.2014.05.035 · Cited by 201 · see citing works
The cellular and molecular mechanisms of vertebrate lens development
Cvekl, A., & Ashery-Padan, R. (2014) · Development · doi:10.1242/dev.107953 · Cited by 227 · see citing works
Chromatin Remodeling BAF (SWI/SNF) Complexes in Neural Development and Disorders
Sokpor, G., Xie, Y., Rosenbusch, J., & Tuoc, T. (2017) · Frontiers in Molecular Neuroscience · doi:10.3389/fnmol.2017.00243 · Cited by 221 · see citing works
Self-citationSWI/SNF chromatin remodeling complexes and cancer
Biegel, J. A., Busse, T., & Weissman, B. E. (2014) · American Journal of Medical Genetics Part C Seminars in Medical Genetics · doi:10.1002/ajmg.c.31410 · Cited by 183 · see citing works
Roles and activities of chromatin remodeling ATP ases in plants
Han, S., Wu, M., Cui, S., & Wagner, D. (2015) · The Plant Journal · doi:10.1111/tpj.12877 · Cited by 158 · see citing works
Neocortical neurogenesis and the etiology of autism spectrum disorder
Packer, A. (2016) · Neuroscience & Biobehavioral Reviews · doi:10.1016/j.neubiorev.2016.03.002 · Cited by 138 · see citing works
De Novo Mutation in Genes Regulating Neural Stem Cell Fate in Human Congenital Hydrocephalus
Furey, C. G., Choi, J., Jin, S. C., Zeng, X., Timberlake, A. T., Nelson-Williams, C. J., Mansuri, M. S., Lu, Q., Durán, D., Panchagnula, S., et al. (2018) · Neuron · doi:10.1016/j.neuron.2018.06.019 · Cited by 147 · see citing works
Regulation of cerebral cortical neurogenesis by the Pax6 transcription factor
Manuel, M. N., Mi, D., Mason, J. O., & Price, D. J. (2015) · Frontiers in Cellular Neuroscience · doi:10.3389/fncel.2015.00070 · Cited by 153 · see citing works
The role of BAF (mSWI/SNF) complexes in mammalian neural development
Son, E., & Crabtree, G. R. (2014) · American Journal of Medical Genetics Part C Seminars in Medical Genetics · doi:10.1002/ajmg.c.31416 · Cited by 146 · see citing works
SWI/SNF complex prevents lineage reversion and induces temporal patterning in neural stem cells.
Eroglu, E., Burkard, T., Jiang, Y.-R., Saini, N., Homem, C. C. F., Reichert, H., & Knoblich, J. A. (2014) · Cell · doi:10.1016/j.cell.2014.01.053 · Cited by 140 · see citing works
Epigenetic Regulations in Neuropsychiatric Disorders
Kuehner, J. N., Bruggeman, E. C., Wen, Z., & Yao, B. (2019) · Frontiers in Genetics · doi:10.3389/fgene.2019.00268 · Cited by 137 · see citing works
Narayanan, R., Pirouz, M., Kerimoglu, C., Pham, L., Wagener, R. J., Kiszka, K. A., Rosenbusch, J., Seong, R. H., Kessel, M., Fischer, A., et al. (2015) · Cell Reports · doi:10.1016/j.celrep.2015.10.046 · Cited by 119 · see citing works
Self-citationKosho, T., Miyake, N., & Carey, J. C. (2014) · American Journal of Medical Genetics Part C Seminars in Medical Genetics · doi:10.1002/ajmg.c.31415 · Cited by 116 · see citing works
From trans to cis: transcriptional regulatory networks in neocortical development
Shibata, M., Gulden, F. O., & Sestan, N. (2015) · Trends in Genetics · doi:10.1016/j.tig.2014.12.004 · Cited by 109 · see citing works
Mossink, B., Negwer, M., Schubert, D., & Nadif Kasri, N. (2021) · Cellular and Molecular Life Sciences · doi:10.1007/s00018-020-03714-5 · Cited by 114 · see citing works
Emerging Roles of Long Non-Coding RNAs as Drivers of Brain Evolution
Zimmer‐Bensch, G. (2019) · Cells · doi:10.3390/cells8111399 · Cited by 98 · see citing works
Genes and Mechanisms Involved in the Generation and Amplification of Basal Radial Glial Cells
Penisson, M., Ladewig, J., Belvindrah, R., & Francis, F. (2019) · Frontiers in Cellular Neuroscience · doi:10.3389/fncel.2019.00381 · Cited by 97 · see citing works
Epigenetics and epitranscriptomics in temporal patterning of cortical neural progenitor competence
Yoon, K., Vissers, C. B., Ming, G., & Song, H. (2018) · The Journal of Cell Biology · doi:10.1083/jcb.201802117 · Cited by 96 · see citing works
The Epigenetic State of PRDM16-Regulated Enhancers in Radial Glia Controls Cortical Neuron Position
Baizabal, J., Mistry, M., Garcίa, M. T., Gómez, N., Olukoya, O., Tran, D., Johnson, M. B., Walsh, C. A., & Harwell, C. C. (2018) · Neuron · doi:10.1016/j.neuron.2018.04.033 · Cited by 88 · see citing works
Machol, K., Rousseau, J., Ehresmann, S., Garcia, T., Nguyen, T. T. M., Spillmann, R. C., Sullivan, J. A., Shashi, V., Jiang, Y., Stong, N., et al. (2018) · The American Journal of Human Genetics · doi:10.1016/j.ajhg.2018.11.007 · Cited by 86 · see citing works
Monaghan, C. E., Nechiporuk, T., Jeng, S., McWeeney, S. K., Wang, J., Rosenfeld, M. G., & Mandel, G. (2017) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1620230114 · Cited by 83 · see citing works
The REST remodeling complex protects genomic integrity during embryonic neurogenesis
Nechiporuk, T., McGann, J. C., Müllendorff, K., Hsieh, J., Wurst, W., Floß, T., & Mandel, G. (2016) · eLife · doi:10.7554/elife.09584 · Cited by 78 · see citing works
Multimodal Single-Cell Analysis Reveals Physiological Maturation in the Developing Human Neocortex
Mayer, S., Chen, J., Velmeshev, D., Mayer, A., Eze, U. C., Bhaduri, A., da Cunha, C. E., Jung, D., Arjun, A., Li, E., et al. (2019) · Neuron · doi:10.1016/j.neuron.2019.01.027 · Cited by 81 · see citing works
Context-specific functions of chromatin remodellers in development and disease
Gourisankar, S. P., Krokhotin, A., Wenderski, W., & Crabtree, G. R. (2023) · Nature Reviews Genetics · doi:10.1038/s41576-023-00666-x · Cited by 85 · see citing works
Mechanisms of brain evolution: Regulation of neural progenitor cell diversity and cell cycle length
Borrell, V., & Calegari, F. (2014) · Neuroscience Research · doi:10.1016/j.neures.2014.04.004 · Cited by 78 · see citing works
ARID1B-mediated disorders: Mutations and possible mechanisms
Sim, J. C. H., White, S. M., & Lockhart, P. J. (2014) · Intractable & Rare Diseases Research · doi:10.5582/irdr.2014.01021 · Cited by 77 · see citing works
Untangling Cortical Complexity During Development
Mukhtar, T., & Taylor, V. (2018) · Journal of Experimental Neuroscience · doi:10.1177/1179069518759332 · Cited by 73 · see citing works
Goodwin, L. R., & Picketts, D. J. (2017) · Molecular and Cellular Neuroscience · doi:10.1016/j.mcn.2017.10.008 · Cited by 74 · see citing works
Bachmann, C., Nguyen, H., Rosenbusch, J., Pham, L., Rabe, T., Patwa, M., Sokpor, G., Seong, R. H., Ashery‐Padan, R., Mansouri, A., et al. (2016) · PLoS Genetics · doi:10.1371/journal.pgen.1006274 · Cited by 70 · see citing works
Self-citationThe role of Pax6 in brain development and its impact on pathogenesis of autism spectrum disorder
Kikkawa, T., Casingal, C. R., Chun, S. H., Shinohara, H. M., Hiraoka, K., & Osumi, N. (2018) · Brain Research · doi:10.1016/j.brainres.2018.02.041 · Cited by 66 · see citing works
Ypsilanti, A. R., & Rubenstein, J. L. R. (2015) · The Journal of Comparative Neurology · doi:10.1002/cne.23866 · Cited by 62 · see citing works
Xie, Y., Castro-Hernández, R., Sokpor, G., Pham, L., Narayanan, R., Rosenbusch, J., Staiger, J. F., & Tuoc, T. (2019) · Molecular Neurobiology · doi:10.1007/s12035-019-1595-1 · Cited by 64 · see citing works
Self-citationATP-Dependent Chromatin Remodeling During Cortical Neurogenesis
Sokpor, G., Castro-Hernández, R., Rosenbusch, J., Staiger, J. F., & Tuoc, T. (2018) · Frontiers in Neuroscience · doi:10.3389/fnins.2018.00226 · Cited by 60 · see citing works
Self-citationNguyen, H., Kerimoglu, C., Pirouz, M., Pham, L., Kiszka, K. A., Sokpor, G., Sakib, M. S., Rosenbusch, J., Teichmann, U., Seong, R. H., et al. (2018) · Stem Cell Reports · doi:10.1016/j.stemcr.2018.04.014 · Cited by 58 · see citing works
Self-citationPrem, S., Millonig, J. H., & DiCicco-Bloom, E. M. (2020) · Advances in neurobiology · doi:10.1007/978-3-030-45493-7_5 · Cited by 57 · see citing works
Ochi, S., Manabe, S., Kikkawa, T., & Osumi, N. (2022) · International Journal of Molecular Sciences · doi:10.3390/ijms23116115 · Cited by 58 · see citing works
Tuoc, T., Dere, E., Radyushkin, K., Pham, L., Nguyen, H., Tonchev, A. B., Sun, G., Ronnenberg, A., Shi, Y., Staiger, J. F., et al. (2016) · Molecular Neurobiology · doi:10.1007/s12035-016-9948-5 · Cited by 52 · see citing works
Self-citationElsen, G. E., Bedogni, F., Hodge, R. D., Bammler, T. K., MacDonald, J. W., Lindtner, S., Rubenstein, J. L. R., & Hevner, R. F. (2018) · Frontiers in Neuroscience · doi:10.3389/fnins.2018.00571 · Cited by 56 · see citing works
Small molecule modulators of chromatin remodeling: from neurodevelopment to neurodegeneration
Jiang, D., Li, T., Guo, C., Tang, T.-S., & Liu, H. (2023) · Cell & Bioscience · doi:10.1186/s13578-023-00953-4 · Cited by 54 · see citing works
Li, J., Ma, Z., Shi, M., Malty, R. H., Aoki, H., Minić, Z., Phanse, S., Jin, K., Wall, D. P., Zhang, Z., et al. (2015) · Cell Systems · doi:10.1016/j.cels.2015.11.002 · Cited by 48 · see citing works
MCPH1: a window into brain development and evolution
Pulvers, J. N. (2015) · Frontiers in Cellular Neuroscience · doi:10.3389/fncel.2015.00092 · Cited by 49 · see citing works
Roles of chromatin remodeling BAF complex in neural differentiation and reprogramming
Narayanan, R., & Tuoc, T. (2014) · Cell and Tissue Research · doi:10.1007/s00441-013-1791-7 · Cited by 49 · see citing works
Self-citationBAF chromatin remodeling complex: Cortical size regulation and beyond
Tuoc, T., Narayanan, R., & Stoykova, A. (2013) · Cell Cycle · doi:10.4161/cc.25999 · Cited by 44 · see citing works
Self-citationTranscriptional and Post-Transcriptional Mechanisms of the Development of Neocortical Lamination
Popovitchenko, T., & Rašin, M. (2017) · Frontiers in Neuroanatomy · doi:10.3389/fnana.2017.00102 · Cited by 45 · see citing works
Chromatin Remodeling BAF155 Subunit Regulates the Genesis of Basal Progenitors in Developing Cortex
Narayanan, R., Pham, L., Kerimoglu, C., Watanabe, T., Castro-Hernández, R., Sokpor, G., Ulmke, P. A., Kiszka, K. A., Tonchev, A. B., Rosenbusch, J., et al. (2018) · iScience · doi:10.1016/j.isci.2018.05.014 · Cited by 44 · see citing works
Self-citationLiu, J., Liu, S., Gao, H., Han, L., Chu, X., Sheng, Y., Wang, Y., Shou, W., Liu, Y., Wan, J., et al. (2020) · Genome biology · doi:10.1186/s13059-020-02082-4 · Cited by 39 · see citing works
Matsumoto, S., Banine, F., Feistel, K., Foster, S. C., Xing, R., Struve, J., & Sherman, L. (2016) · Developmental Biology · doi:10.1016/j.ydbio.2016.04.003 · Cited by 40 · see citing works
Transcriptional and Epigenetic Control of Mammalian Olfactory Epithelium Development
Sokpor, G., Abbas, E., Rosenbusch, J., Staiger, J., & Tran, T. (2018) · Molecular Neurobiology · doi:10.1007/s12035-018-0987-y · Cited by 36 · see citing works
Self-citationKrubitzer, L. A., & Dooley, J. C. (2013) · Frontiers in Human Neuroscience · doi:10.3389/fnhum.2013.00620 · Cited by 41 · see citing works
Nguyen, H., Sokpor, G., Pham, L., Rosenbusch, J., Stoykova, A., Staiger, J. F., & Tuoc, T. (2016) · Cell Cycle · doi:10.1080/15384101.2016.1160984 · Cited by 41 · see citing works
Self-citationEpigenetic Mistakes in Neurodevelopmental Disorders
Mastrototaro, G., Zaghi, M., & Sessa, A. (2017) · Journal of Molecular Neuroscience · doi:10.1007/s12031-017-0900-6 · Cited by 38 · see citing works
NCKAP1 Disruptive Variants Lead to a Neurodevelopmental Disorder with Core Features of Autism
Guo, H., Zhang, Q., Dai, R., Yu, B., Hoekzema, K., Tan, J., Tan, S., Jia, X., Chung, W. K., Hernan, R., et al. (2020) · The American Journal of Human Genetics · doi:10.1016/j.ajhg.2020.10.002 · Cited by 38 · see citing works
A molecular model for neurodevelopmental disorders
Gigek, C. O., Chen, E., Ota, V., Maussion, G., Peng, H., Vaillancourt, K., Diallo, A., López, J. P., Crapper, L., Vasuta, C., et al. (2015) · Translational Psychiatry · doi:10.1038/tp.2015.56 · Cited by 38 · see citing works
Yoshizaki, K., Furuse, T., Kimura, R., Tucci, V., Kaneda, H., Wakana, S., & Osumi, N. (2016) · PLoS ONE · doi:10.1371/journal.pone.0166665 · Cited by 35 · see citing works
Sun, J., Zhao, Y., McGreal, R., Cohen‐Tayar, Y., Rockowitz, S., Wilczek, C., Ashery‐Padan, R., Shechter, D., Zheng, D., & Cvekl, A. (2016) · Epigenetics & Chromatin · doi:10.1186/s13072-016-0087-z · Cited by 33 · see citing works
Scott, C. A., Marsden, A. N., Rebagliati, M. R., Zhang, Q., Chamling, X., Searby, C. C., Baye, L. M., Sheffield, V. C., & Slusarski, D. C. (2017) · PLoS Genetics · doi:10.1371/journal.pgen.1006936 · Cited by 32 · see citing works
Structural brain anomalies in patients with FOXG 1 syndrome and in Foxg1+/− mice
Pringsheim, M., Mitter, D., Schröder, S., Warthemann, R., Plümacher, K. S., Kluger, G. J., Baethmann, M., Bast, T., Braun, S., Büttel, H., et al. (2019) · Annals of Clinical and Translational Neurology · doi:10.1002/acn3.735 · Cited by 31 · see citing works
Self-citationWeigel, B., Tegethoff, J. F., Grieder, S. D., Lim, B., Nagarajan, B., Liu, Y.-C., Truberg, J., Papageorgiou, D., Adrian-Segarra, J. M., Schmidt, L. K., et al. (2023) · Molecular Psychiatry · doi:10.1038/s41380-023-01959-7 · Cited by 31 · see citing works
Translational genomics of malignant rhabdoid tumours: Current impact and future possibilities
Finetti, M. A., Grabovska, Y., Bailey, S., & Williamson, D. (2020) · Seminars in Cancer Biology · doi:10.1016/j.semcancer.2019.12.017 · Cited by 31 · see citing works
Epigenetic cues modulating the generation of cell‐type diversity in the cerebral cortex
Amberg, N., Laukoter, S., & Hippenmeyer, S. (2018) · Journal of Neurochemistry · doi:10.1111/jnc.14601 · Cited by 28 · see citing works
Developmental convergence and divergence in human stem cell models of autism
Gordon, A., Yoon, S., Bicks, L. K., Martín, J. M., Pintacuda, G., Arteaga, S. A., Wamsley, B., Guo, Q., Elahi, L. S., Dolmetsch, R. E., et al. (2026) · Nature · doi:10.1038/s41586-025-10047-5 · Cited by 41 · see citing works
Ulmke, P. A., Xie, Y., Sokpor, G., Pham, L., Shomroni, O., Berulava, T., Rosenbusch, J., Basu, U., Fischer, A., Nguyen, H. P., et al. (2021) · Development · doi:10.1242/dev.188276 · Cited by 29 · see citing works
Self-citationCritical role of the BAF chromatin remodeling complex during murine neural crest development
Bi-Lin, K. W., Seshachalam, V. P., Tuoc, T., Stoykova, A., Ghosh, S., & Singh, M. K. (2021) · PLoS Genetics · doi:10.1371/journal.pgen.1009446 · Cited by 29 · see citing works
Self-citationH3 acetylation selectively promotes basal progenitor proliferation and neocortex expansion
Kerimoglu, C., Pham, L., Tonchev, A. B., Sakib, M. S., Xie, Y., Sokpor, G., Ulmke, P. A., Kaurani, L., Abbas, E., Nguyen, H., et al. (2021) · Science Advances · doi:10.1126/sciadv.abc6792 · Cited by 31 · see citing works
Self-citationWade, S. L., Langer, L., Ward, J. M., & Archer, T. (2015) · Stem Cells · doi:10.1002/stem.2084 · Cited by 29 · see citing works
Development and evolution of the primate neocortex from a progenitor cell perspective
Dehay, C., & Huttner, W. Β. (2024) · Development · doi:10.1242/dev.199797 · Cited by 27 · see citing works
A schizophrenia-associated HLA locus affects thalamus volume and asymmetry
Brucato, N., Guadalupe, T. M., Franke, B., Fisher, S. E., & Francks, C. (2015) · Brain Behavior and Immunity · doi:10.1016/j.bbi.2015.02.021 · Cited by 26 · see citing works
Sawada, K., Hikishima, K., Murayama, A. Y., Okano, H. J., Sasaki, E., & Okano, H. (2013) · Neuroscience · doi:10.1016/j.neuroscience.2013.10.067 · Cited by 26 · see citing works
Intranuclear immunostaining-based FACS protocol from embryonic cortical tissue
Sakib, M. S., Sokpor, G., Nguyen, H. P., Fischer, A., & Tuoc, T. (2021) · STAR Protocols · doi:10.1016/j.xpro.2021.100318 · Cited by 25 · see citing works
Self-citationWischhof, L., Lee, H., Tutas, J., Overkott, C., Tedt, E., Stork, M., Peitz, M., Brüstle, O., Ulas, T., Händler, K., et al. (2022) · The EMBO Journal · doi:10.15252/embj.2022110595 · Cited by 23 · see citing works
Moffat, J. J., Jung, E., Ka, M., Jeon, B. T., Lee, H., & Kim, W.-Y. (2021) · Scientific Reports · doi:10.1038/s41598-021-82974-y · Cited by 23 · see citing works
Guo, P., Hoang, N., Sanchez, J. C., Zhang, E. H., Rajawasam, K., Trinidad, K., Sun, H., & Zhang, H. (2022) · Nature Communications · doi:10.1038/s41467-022-34348-9 · Cited by 22 · see citing works
Xie, Q. M., Ung, D. C., Хафизов, К. Ф., Fiser, A., & Cvekl, A. (2014) · Europe PMC (PubMed Central) · Cited by 22 · see citing works
Poston, R. G., Dunn, C. J., Sarkar, P., & Saha, R. N. (2018) · Current Zoology · doi:10.1093/eep/dvx020 · Cited by 22 · see citing works
Mozzi, A., Forni, D., Cagliani, R., Pozzoli, U., Clerici, M., & Sironi, M. (2017) · Scientific Reports · doi:10.1038/s41598-017-06440-4 · Cited by 19 · see citing works
Chubak, M. C., Nixon, K. C. J., Stone, M. H., Raun, N., Rice, S. L., Sarikahya, M. H., Jones, S. G., Lyons, T. A., Jakub, T. E., Mainland, R. L., et al. (2019) · Disease Models & Mechanisms · doi:10.1242/dmm.037325 · Cited by 19 · see citing works
Control of cerebral size and thickness
Tuoc, T., Pavlakis, E., Tylkowski, M. A., & Stoykova, A. (2014) · Cellular and Molecular Life Sciences · doi:10.1007/s00018-014-1590-7 · Cited by 24 · see citing works
Self-citationTranscriptional and epigenetic regulation of temporal patterning in neural progenitors
Ray, A., Zhu, H., Ding, A. Z., & Li, X. (2021) · Developmental Biology · doi:10.1016/j.ydbio.2021.10.006 · Cited by 19 · see citing works
Singh, A. K., Allington, G., Viviano, S., McGee, S., Kiziltug, E., Ma, S., Zhao, S., Mekbib, K. Y., Shohfi, J., Duy, P. Q., et al. (2023) · Brain · doi:10.1093/brain/awad405 · Cited by 20 · see citing works
Chromatin remodelling complexes in cerebral cortex development and neurodevelopmental disorders
D’Souza, L., Channakkar, A. S., & Muralidharan, B. (2021) · Neurochemistry International · doi:10.1016/j.neuint.2021.105055 · Cited by 19 · see citing works
Jiang, Z., Tang, Y., Zhao, X., Zhang, M., Donovan, D. M., & Tian, X. (2015) · Stem Cells and Development · doi:10.1089/scd.2015.0069 · Cited by 19 · see citing works
Dorsey, S. G., Mocci, E., Lane, M. V., & Krueger, B. K. (2024) · Translational Psychiatry · doi:10.1038/s41398-024-03179-1 · Cited by 19 · see citing works
Yamashita, W., Takahashi, M., Kikkawa, T., Gotoh, H., Osumi, N., Ono, K., & Nomura, T. (2018) · Development · doi:10.1242/dev.159764 · Cited by 18 · see citing works
Smith, J. A., Holden, K. R., Friez, M. J., Jones, J. R., & Lyons, M. J. (2016) · American Journal of Medical Genetics Part A · doi:10.1002/ajmg.a.37945 · Cited by 18 · see citing works
An epigenetic circuit controls neurogenic programs during neocortex development
Wang, A., Wang, J., Tian, K., Huo, D., Ye, H., Li, S., Zhao, C. N., Zhang, B., Zheng, Y., Xu, L., et al. (2021) · Development · doi:10.1242/dev.199772 · Cited by 17 · see citing works
SWI/SNF Complex Connects Signaling and Epigenetic State in Cells of Nervous System
Chmykhalo, V. K., Deev, R. V., Tokarev, A. T., Polunina, Y. A., Xue, L., & Shidlovskii, Y. V. (2024) · Molecular Neurobiology · doi:10.1007/s12035-024-04355-6 · Cited by 17 · see citing works
Mayfield, J. M., Hitefield, N. L., Czajewski, I., Vanhye, L., Holden, L. L., Morava, É., van Aalten, D. M. F., & Wells, L. (2024) · Journal of Biological Chemistry · doi:10.1016/j.jbc.2024.107599 · Cited by 17 · see citing works
Comparative genomics of brain size evolution
Enard, W. (2014) · Frontiers in Human Neuroscience · doi:10.3389/fnhum.2014.00345 · Cited by 16 · see citing works
How to make neurons—thoughts on the molecular logic of neurogenesis in the central nervous system
Ninkovic, J., & Götz, M. (2014) · Cell and Tissue Research · doi:10.1007/s00441-014-2048-9 · Cited by 17 · see citing works
Snf2h Drives Chromatin Remodeling to Prime Upper Layer Cortical Neuron Development
Alvarez-Saavedra, M., Yan, K., Repentigny, Y. D., Hashem, L. E., Nidhi, C., Sarwar, S., Yang, D., Ioshikhes, I. P., Kothary, R., Hirayama, T., et al. (2019) · Frontiers in Molecular Neuroscience · doi:10.3389/fnmol.2019.00243 · Cited by 17 · see citing works
Core regulatory circuitries in defining cancer cell identity across the malignant spectrum
Jahangiri, L., Tsaprouni, L., Trigg, R. M., Williams, J. A., Gkoutos, G. V., Turner, S. D., & Pereira, J. D. (2020) · Open Biology · doi:10.1098/rsob.200121 · Cited by 14 · see citing works
Cornejo, K. G., Venegas, A., Sono, M. H., Door, M., Gutierrez-Ruiz, B., Karabedian, L. B., Nandi, S. G., Hadisurya, M., Tao, W. A., Dykhuizen, E. C., et al. (2024) · Cell Reports · doi:10.1016/j.celrep.2024.114877 · Cited by 15 · see citing works
- Authors
- Tuoc, T. C., Boretius, S., Sansom, S. N., Pitulescu, M.-E., Frahm, J., Livesey, F. J., & Stoykova, A.
- Affiliations
- Nanoscale Microscopy and Molecular Physiology of the Brain Cluster of Excellence 171 — DFG Research Center 103 (DE)
- University of Cambridge (GB)
- Max Planck Institute for Biophysical Chemistry (DE)
- Corresponding author
- Stoykova, Anastassia
- ORCID
- Venue
- Developmental Cell
- Publisher
- Elsevier BV
- Published
- 2013-05
- Volume
- 25
- Issue
- 3
- Pages
- 256-269
- ISSN
- 1534-5807 (ISSN-L)
- OpenAlex
- W2039033194
- Cited by
- 177
- References
- 41
- Citations by year
- 2026: 6 · 2025: 6 · 2024: 15 · 2023: 14 · 2022: 11 · 2021: 18 · 2020: 11 · 2019: 17 · 2018: 18 · 2017: 9 · 2016: 16 · 2015: 15 · 2014: 14 · 2013: 7
- FWCI
- 6.43
- Type
- journal article
- Language
- en
- Open access
- bronze
- doi.org
- Licence
- Locations
- Developmental Cell (publishedVersion)
- PubMed (publishedVersion)
- GRO (submittedVersion)
- MPG.PuRe (Max Planck Society) (submittedVersion, other-oa)
- Funders
- Wellcome Trust (092096)
- Topics
- Life Sciences › Neuroscience › Developmental Neuroscience › Neurogenesis and neuroplasticity mechanisms
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Genetics and Neurodevelopmental Disorders
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Chromatin Remodeling and Cancer
- Keywords
- BAF170, BAF155, cortical thickness, intermediate progenitor cells, Pax6, cortical progenitors, conditional gene deletion, primate brain evolution
- MeSH terms
- PAX6 Transcription Factor, RE1-Silencing Transcription Factor, Animals, Cerebral Cortex, Chromatin, Eye Proteins, Female, HeLa Cells, Histones, Humans, Male, Mice, Transgenic, Neurons, Nuclear Proteins, Organ Size, Promoter Regions, Genetic, Protein Binding, Repressor Proteins, Transcription Factors, Homeodomain Proteins, DNA Methylation, Protein Interaction Mapping, Chromatin Assembly and Disassembly, Epigenesis, Genetic, Multiprotein Complexes, Mice, Paired Box Transcription Factors, Neurogenesis
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