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XPA: A key scaffold for human nucleotide excision repair
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Nucleotide excision repair (NER) is essential for removing many types of DNA lesions from the genome, yet the mechanisms of NER in humans remain poorly understood. This review summarizes our current understanding of the structure, biochemistry, interaction partners, mechanisms, and disease-associated mutations of one of the critical NER proteins, XPA.
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“The targeting of XPA to the nucleus occurs via its nuclear localization sequence (NLS) which contains basic residues located at positons 30–34 of the 273 amino acid protein 62, 63, 82, 68.”
From Xeroderma Pigmentosa Group A (XPA), Nucleotide Excision Repair and Regulation by ATR in Response to Ultraviolet Irradiation (2017) · cites this paper as [82]
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UCSF Chimera—A visualization system for exploratory research and analysis
Pettersen, E. F., Goddard, T. D., Huang, C. C., Couch, G. S., Greenblatt, D. M., Meng, E. C., & Ferrin, T. E. (2004) · Journal of Computational Chemistry · doi:10.1002/jcc.20084 · Cited by 46,047
Integrative Analysis of Complex Cancer Genomics and Clinical Profiles Using the cBioPortal
Gao, J., Aksoy, B. A., Dogrusoz, U., Dresdner, G., Gross, B., Sumer, S. O., Sun, Y., Jacobsen, A., Sinha, R., Larsson, E., et al. (2013) · Science Signaling · doi:10.1126/scisignal.2004088 · Cited by 15,160
Deciphering key features in protein structures with the new ENDscript server
Robert, X., & Gouet, P. (2014) · Nucleic Acids Research · doi:10.1093/nar/gku316 · Cited by 7,053
Caspase Functions in Cell Death and DiseasePreprint
McIlwain, D. R., Berger, T., & Mak, T. W. (2013) · Cold Spring Harbor Perspectives in Biology · doi:10.1101/cshperspect.a008656 · Cited by 2,702
Hoeijmakers, J. H. J. (2009) · New England Journal of Medicine · doi:10.1056/nejmra0804615 · Cited by 2,239
Wold, M. S. (1997) · Annual Review of Biochemistry · doi:10.1146/annurev.biochem.66.1.61 · Cited by 1,445
PROMALS3D: a tool for multiple protein sequence and structure alignments
Pei, J., Kim, B., & Grishin, N. V. (2008) · Nucleic Acids Research · doi:10.1093/nar/gkn072 · Cited by 1,286
Nucleotide Excision Repair in EukaryotesPreprint
Schärer, O. D. (2013) · Cold Spring Harbor Perspectives in Biology · doi:10.1101/cshperspect.a012609 · Cited by 863
Molecular Mechanisms of Mammalian Global Genome Nucleotide Excision Repair
Gillet, L. C. J., & Schärer, O. D. (2006) · Chemical Reviews · doi:10.1021/cr040483f · Cited by 642 · cited 1×
“Deletion of any of the remaining exons (2-5), which code for the DNA binding domain, resulted in complete loss of NER activity.”
A dynamic model for replication protein A (RPA) function in DNA processing pathways
Fanning, E. (2006) · Nucleic Acids Research · doi:10.1093/nar/gkl550 · Cited by 589
Shining a light on xeroderma pigmentosum
DiGiovanna, J. J., & Kraemer, K. H. (2012) · Journal of Investigative Dermatology · doi:10.1038/jid.2011.426 · Cited by 547
XPG endonuclease makes the 3′ incision in human DNA nucleotide excision repair
O’Donovan, A., Davies, A. A., Moggs, J. G., West, S. C., & Wood, R. D. (1994) · Nature · doi:10.1038/371432a0 · Cited by 487
Bradford, P. T., Goldstein, A. M., Tamura, D., Khan, S. G., Ueda, T., Boyle, J., Oh, K.-S., Imoto, K., Inui, H., Moriwaki, S.-I., et al. (2011) · Journal of Medical Genetics · doi:10.1136/jmg.2010.083022 · Cited by 480
The comings and goings of nucleotide excision repair factors on damaged DNA
Riedl, T., Hanaoka, F., & Egly, J. (2003) · The EMBO Journal · doi:10.1093/emboj/cdg489 · Cited by 439
Recognition of DNA damage by the Rad4 nucleotide excision repair protein
Min, J., & Pavletich, N. P. (2007) · Nature · doi:10.1038/nature06155 · Cited by 431
Cancer in xeroderma pigmentosum and related disorders of DNA repair
Cleaver, J. E. (2005) · Nature Reviews Cancer · doi:10.1038/nrc1652 · Cited by 427
Regulation of PCNA–protein interactions for genome stability
Mailand, N., Gibbs‐Seymour, I., & Bekker‐Jensen, S. (2013) · Nature Reviews Molecular Cell Biology · doi:10.1038/nrm3562 · Cited by 395
Jungmichel, S., Rosenthal, F., Altmeyer, M., Lukas, J., Hottiger, M. O., & Nielsen, M. L. (2013) · Molecular Cell · doi:10.1016/j.molcel.2013.08.026 · Cited by 393
Tanaka, K., Miura, N., Satokata, I., Miyamoto, I., Yoshida, M. C., Satoh, Y., Kondo, S., Yasui, A., Okayama, H., & Okada, Y. (1990) · Nature · doi:10.1038/348073a0 · Cited by 388
Lentiviral vectors: basic to translational
Sakuma, T., Barry, M. A., & Ikeda, Y. (2012) · Biochemical Journal · doi:10.1042/bj20120146 · Cited by 372
Thirty years of baculovirus–insect cell protein expression: from dark horse to mainstream technology
van Oers, M. M., Pijlman, G. P., & Vlak, J. M. (2014) · Journal of General Virology · doi:10.1099/vir.0.067108-0 · Cited by 362
Lehmann, A. R., McGibbon, D., & Stefanini, M. (2011) · Orphanet Journal of Rare Diseases · doi:10.1186/1750-1172-6-70 · Cited by 343
Prokaryotic Nucleotide Excision Repair: The UvrABC System
Truglio, J. J., Croteau, D. L., Van Houten, B., & Kisker, C. (2006) · Chemical Reviews · doi:10.1021/cr040471u · Cited by 340
Specific association between the human DNA repair proteins XPA and ERCC1.
Li, L., Elledge, S. J., Peterson, C. A., Bales, E. S., & Legerski, R. J. (1994) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.91.11.5012 · Cited by 303
Coordination of dual incision and repair synthesis in human nucleotide excision repair
Staresincic, L., Fagbemi, A. F., Enzlin, J. H., Gourdin, A. M., Wijgers, N., Dunand‐Sauthier, I., Giglia‐Mari, G., Clarkson, S. G., Vermeulen, W., & Schärer, O. D. (2009) · The EMBO Journal · doi:10.1038/emboj.2009.49 · Cited by 287
PARP1 promotes nucleotide excision repair through DDB2 stabilization and recruitment of ALC1
Pines, A., Vrouwe, M. G., Marteijn, J. A. F., Typas, D., Luijsterburg, M. S., Cansoy, M., Hensbergen, P. J., Deelder, A. M., de Groot, A., Matsumoto, S., et al. (2012) · The Journal of Cell Biology · doi:10.1083/jcb.201112132 · Cited by 280
Yokoi, M., Masutani, C., Maekawa, T., Sugasawa, K., Ohkuma, Y., & Hanaoka, F. (2000) · Journal of Biological Chemistry · doi:10.1074/jbc.275.13.9870 · Cited by 277
Mer, G., Bochkarev, A. V., Gupta, R., Bochkareva, E. S., Frappier, L., Ingles, C. J., Edwards, A. M., & Chazin, W. (2000) · Cell · doi:10.1016/s0092-8674(00)00136-7 · Cited by 254
Self-citationLi, L., Lu, X., Peterson, C. A., & Legerski, R. J. (1995) · Molecular and Cellular Biology · doi:10.1128/mcb.15.10.5396 · Cited by 252
Batty, D. P., Rapić-Otrin, V., Levine, A. S., & Wood, R. D. (2000) · Journal of Molecular Biology · doi:10.1006/jmbi.2000.3857 · Cited by 211
Xeroderma pigmentosum complementation group E and UV-damaged DNA-binding protein
Tang, J. Y., & Chu, G. (2002) · DNA repair · doi:10.1016/s1568-7864(02)00052-6 · Cited by 208
Lello, P. D., Jenkins, L. M. M., Jones, T. N., Nguyen, B. D., Hara, T. J., Yamaguchi, H., Dikeakos, J. D., Appella, E., Legault, P., & Omichinski, J. G. (2006) · Molecular Cell · doi:10.1016/j.molcel.2006.05.007 · Cited by 206
McNeil, E. M., & Melton, D. W. (2012) · Nucleic Acids Research · doi:10.1093/nar/gks818 · Cited by 195
Park, C.-H., Mu, D., Reardon, J. T., & Sancar, A. (1995) · Journal of Biological Chemistry · doi:10.1074/jbc.270.9.4896 · Cited by 191
Nucleotide Excision Repair Driven by the Dissociation of CAK from TFIIH
Coin, F., Oksenych, V., Mocquet, V., Groh, S., Blattner, C., & Egly, J. (2008) · Molecular Cell · doi:10.1016/j.molcel.2008.04.024 · Cited by 188
Molecular Structure of Human TFIIH
Schultz, P., Fribourg, S., Poterszman, A., Mallouh, V., Moras, D., & Egly, J. M. (2000) · Cell · doi:10.1016/s0092-8674(00)00082-9 · Cited by 180
Robu, M., Shah, R. G., Petitclerc, N., Brind’Amour, J., Kandan-Kulangara, F., & Shah, G. M. (2013) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1209507110 · Cited by 177
DDB2 promotes chromatin decondensation at UV-induced DNA damage
Luijsterburg, M. S., Lindh, M., Ács, K., Vrouwe, M. G., Pines, A., van Attikum, H., Mullenders, L. H. F., & Dantuma, N. P. (2012) · The Journal of Cell Biology · doi:10.1083/jcb.201106074 · Cited by 176
Characterization of DNA Recognition by the Human UV-damaged DNA-binding Protein
Fujiwara, Y., Masutani, C., Mizukoshi, T., Kondo, J., Hanaoka, F., & Iwai, S. (1999) · Journal of Biological Chemistry · doi:10.1074/jbc.274.28.20027 · Cited by 175
Fuss, J. O., & Tainer, J. A. (2011) · DNA Repair · doi:10.1016/j.dnarep.2011.04.028 · Cited by 170
Structural basis for the recruitment of ERCC1‐XPF to nucleotide excision repair complexes by XPA
Tsodikov, O. V., Ivanov, D., Orelli, B., Staresincic, L., Shoshani, I., Oberman, R., Schärer, O. D., Wagner, G., & Ellenberger, T. (2007) · The EMBO Journal · doi:10.1038/sj.emboj.7601894 · Cited by 166
Li, C., Gołębiowski, F., Onishi, Y., Samara, N. L., Sugasawa, K., & Yang, W. (2015) · Molecular Cell · doi:10.1016/j.molcel.2015.08.012 · Cited by 160
The Molecular Biology Database Collection: an online compilation of relevant database resources
Baxevanis, A. D. (2000) · Nucleic Acids Research · doi:10.1093/nar/28.1.1 · Cited by 155
Xeroderma pigmentosum group A protein loads as a separate factor onto DNA lesions
Rademakers, S., Volker, M., Hoogstraten, D., Nigg, A. L., Moné, M. J., van Zeeland, A. A., Hoeijmakers, J. H. J., Houtsmuller, A. B., & Vermeulen, W. (2003) · Molecular and Cellular Biology · doi:10.1128/mcb.23.16.5755-5767.2003 · Cited by 149
Nakatsu, Y., Asahina, H., Citterio, E., Rademakers, S., Vermeulen, W., Kamiuchi, S., Yeo, J.-P., Khaw, M.-C., Saijo, M., Kodo, N., et al. (2000) · Journal of Biological Chemistry · doi:10.1074/jbc.m004936200 · Cited by 148
A historical perspective on protein crystallization from 1840 to the present day
Giegé, R. (2013) · FEBS Journal · doi:10.1111/febs.12580 · Cited by 142
The Crystal Structure of Human CDK7 and Its Protein Recognition Properties
Lolli, G., Lowe, E. D., Brown, N. R., & Johnson, L. N. (2004) · Structure · doi:10.1016/j.str.2004.08.013 · Cited by 142
Solution structure of the DNA- and RPA-binding domain of the human repair factor XPA
Ikegami, T., Kuraoka, I., Saijo, M., Kodo, N., Kyogoku, Y., Morikawa, K., Tanaka, K., & Shirakawa, M. (1998) · Nature Structural & Molecular Biology · doi:10.1038/1400 · Cited by 139
Neurological symptoms and natural course of xeroderma pigmentosum
Anttinen, A., Koulu, L., Nikoskelainen, E., Portin, R., Kurki, T., Erkinjuntti, M., Jaspers, N. G. J., Raams, A., Green, M. H. L., Lehmann, A. R., et al. (2008) · Brain · doi:10.1093/brain/awn126 · Cited by 132
Miyamoto, I., Miura, N., Niwa, H., Miyazaki, J., & Tanaka, K. (1992) · Journal of Biological Chemistry · doi:10.1016/s0021-9258(19)49821-9 · Cited by 122
DNA Damage Recognition by XPA Protein Promotes Efficient Recruitment of Transcription Factor II H
Nocentini, S., Coin, F., Saijo, M., Tanaka, K., & Egly, J. (1997) · Journal of Biological Chemistry · doi:10.1074/jbc.272.37.22991 · Cited by 109
Biochemical Analysis of the Damage Recognition Process in Nucleotide Excision Repair
You, J., Wang, M., & Lee, S. (2003) · Journal of Biological Chemistry · doi:10.1074/jbc.m210603200 · Cited by 108
Identification of a damaged-DNA binding domain of the XPA protein
Kuraoka, I., Morita, E. H., Saijo, M., Matsuda, T., Morikawa, K., Shirakawa, M., & Tanaka, K. (1996) · Mutation Research/DNA Repair · doi:10.1016/0921-8777(95)00038-0 · Cited by 106
ATR-dependent checkpoint modulates XPA nuclear import in response to UV irradiation
Wu, X., Shell, S. M., Liu, Y., & Zou, Y. (2007) · Oncogene · doi:10.1038/sj.onc.1209828 · Cited by 102
Natan, E., Baloğlu, Ç., Pagel, K., Freund, S. M. V., Morgner, N., Robinson, C. V., Fersht, A. R., & Joerger, A. C. (2011) · Journal of Molecular Biology · doi:10.1016/j.jmb.2011.03.047 · Cited by 99
CLEAVER, E. J., & States, J. C. (1997) · Biochemical Journal · doi:10.1042/bj3280001 · Cited by 95
The evolution and mechanisms of nucleotide excision repair proteins
Rouillon, C., & White, M. F. (2010) · Research in Microbiology · doi:10.1016/j.resmic.2010.09.003 · Cited by 94
A new structural framework for integrating replication protein A into DNA processing machinery
Brosey, C. A., Yan, C., Tsutakawa, S. E., Heller, W. T., Rambo, R. P., Tainer, J. A., Ivanov, I. N., & Chazin, W. (2013) · Nucleic Acids Research · doi:10.1093/nar/gks1332 · Cited by 91
Self-citationDynamic Interaction of TTDA with TFIIH Is Stabilized by Nucleotide Excision Repair in Living Cells
Giglia‐Mari, G., Miquel, C., Theil, A. F., Mari, P., Hoogstraten, D., Ng, J. M. Y., Dinant, C., Hoeijmakers, J. H. J., & Vermeulen, W. (2006) · PLoS Biology · doi:10.1371/journal.pbio.0040156 · Cited by 89
Dissection of the Molecular Defects Caused by Pathogenic Mutations in the DNA Repair Factor XPC
de Jesus, B. B., Bjørås, M., Coin, F., & Egly, J. (2008) · Molecular and Cellular Biology · doi:10.1128/mcb.00781-08 · Cited by 89
Biochemical and Structural Domain Analysis of Xeroderma Pigmentosum Complementation Group C Protein
Bunick, C. G., Miller, M. R., Fuller, B. E., Fanning, E., & Chazin, W. (2006) · Biochemistry · doi:10.1021/bi061370o · Cited by 88
Self-citationFei, J., Kaczmarek, N., Luch, A., Glas, A. F., Carell, T., & Naegeli, H. (2011) · PLoS Biology · doi:10.1371/journal.pbio.1001183 · Cited by 88
Proliferating Cell Nuclear Antigen Structure and Interactions
Biasio, A. D., & Blanco, F. J. (2013) · Advances in protein chemistry and structural biology · doi:10.1016/b978-0-12-411637-5.00001-9 · Cited by 87
Structural Mechanisms of DNA Replication, Repair, and Recombination
Stauffer, M. E., & Chazin, W. (2004) · Journal of Biological Chemistry · doi:10.1074/jbc.r400015200 · Cited by 87
Self-citationShell, S. M., Li, Z., Shkriabai, N., Kvaratskhelia, M., Brosey, C., Serrano, M. A., Chazin, W. J., Musich, P. R., & Zou, Y. (2009) · Journal of Biological Chemistry · doi:10.1074/jbc.m109.000745 · Cited by 86
Self-citationUchida, A., Sugasawa, K., Masutani, C., Dohmae, N., Araki, M., Yokoi, M., Ohkuma, Y., & Hanaoka, F. (2002) · DNA repair · doi:10.1016/s1568-7864(02)00031-9 · Cited by 84
Buchko, G. W., Daughdrill, G. W., de Lorimier, R., Sudha Rao B. K., Isern, N. G., Lingbeck, J. M., Taylor, J.-S., Wold, M. S., Gochin, M., Spicer, L. D., et al. (1999) · Biochemistry · doi:10.1021/bi991755p · Cited by 83
TFIIH contains a PH domain involved in DNA nucleotide excision repair
Gervais, V., Lamour, V., Jawhari, A., Frindel, F., Wasielewski, E., Dubaele, S., Egly, J., Thierry, J., Kieffer, B., & Poterszman, A. (2004) · Nature Structural & Molecular Biology · doi:10.1038/nsmb782 · Cited by 82
Vodenicharov, M. D., Ghodgaonkar, M. M., Halappanavar, S. S., Shah, R. G., & Shah, G. M. (2005) · Journal of Cell Science · doi:10.1242/jcs.01636 · Cited by 78
Manjasetty, B. A., Turnbull, A. P., Panjikar, S., Büssow, K., & Chance, M. R. (2008) · PROTEOMICS · doi:10.1002/pmic.200700687 · Cited by 75
Krasikova, Y. S., Rechkunova, N. I., Maltseva, E. A., Petruseva, I. O., & Lavrik, O. I. (2010) · Nucleic Acids Research · doi:10.1093/nar/gkq649 · Cited by 74
Fischer, J. M. F., Popp, O., Gebhard, D., Veith, S., Fischbach, A., Beneke, S., Leitenstorfer, A., Bergemann, J., Scheffner, M., Ferrando‐May, E., et al. (2014) · The FEBS Journal · doi:10.1111/febs.12885 · Cited by 72
Dual-Incision Assays for Nucleotide Excision Repair Using DNA with a Lesion at a Specific Site
Shivji, M. K. K., Moggs, J. G., Kuraoka, I., & Wood, R. D. (2003) · Humana Press eBooks · doi:10.1385/1-59259-675-4:373 · Cited by 70
Buchko, G. W. (1998) · Nucleic Acids Research · doi:10.1093/nar/26.11.2779 · Cited by 70
Dimerization of Human XPA and Formation of XPA2−RPA Protein Complex
Yang, Z.-G., Liu, Y., Mao, L. Y., Zhang, J.-T., & Zou, Y. (2002) · Biochemistry · doi:10.1021/bi026064z · Cited by 70
Gilljam, K. M., Müller, R., Liabakk, N. B., & Otterlei, M. (2012) · PLoS ONE · doi:10.1371/journal.pone.0049199 · Cited by 69
King, B. S., Cooper, K. L., Liu, K. J., & Hudson, L. G. (2012) · Journal of Biological Chemistry · doi:10.1074/jbc.m112.393504 · Cited by 68
Strand-Specific Binding of RPA and XPA to Damaged Duplex DNA
Hermanson, I. L., & Turchi, J. J. (2002) · Biochemistry · doi:10.1021/bi0112863 · Cited by 67
Yang, Z., Roginskaya, M., Colis, L. C., Basu, A. K., Shell, S. M., Liu, Y., Musich, P. R., Harris, C. M., Harris, T. M., & Zou, Y. (2006) · Biochemistry · doi:10.1021/bi061626q · Cited by 65
Wittschieben, B. Ø., & Wood, R. D. (2003) · DNA repair · doi:10.1016/s1568-7864(03)00113-7 · Cited by 65
Shell, S. M., Hawkins, E. K., Tsai, M.-S., Hlaing, A. S., Rizzo, C. J., & Chazin, W. (2013) · DNA repair · doi:10.1016/j.dnarep.2013.08.013 · Cited by 59
Self-citationLee, S., Kim, D., & Drissi, R. (1995) · Journal of Biological Chemistry · doi:10.1074/jbc.270.37.21800 · Cited by 58
A novel cytoplasmic GTPase XAB1 interacts with DNA repair protein XPA
Nitta, M. (2000) · Nucleic Acids Research · doi:10.1093/nar/28.21.4212 · Cited by 58
Extended String Binding Mode of the Phosphorylated Transactivation Domain of Tumor Suppressor p53
Okuda, M., & Nishimura, Y. (2014) · Journal of the American Chemical Society · doi:10.1021/ja506351f · Cited by 54
Feltes, B. C., & Bonatto, D. (2014) · Mutation Research/Reviews in Mutation Research · doi:10.1016/j.mrrev.2014.12.002 · Cited by 53
Solution Structure of the N-terminal Domain of the Human TFIIH MAT1 Subunit
Gervais, V., Busso, D., Wasielewski, E., Poterszman, A., Egly, J., Thierry, J., & Kieffer, B. (2001) · Journal of Biological Chemistry · doi:10.1074/jbc.m007963200 · Cited by 50
Lembo, F., Pero, R., Angrisano, T., Vitiello, C., Iuliano, R., Bruni, C. B., & Chiariotti, L. (2003) · Molecular and Cellular Biology · doi:10.1128/mcb.23.5.1656-1665.2003 · Cited by 50
Satokata, I., Tanaka, K., & Okada, Y. (1992) · Human Genetics · doi:10.1007/bf02265282 · Cited by 49
Daughdrill, G. W. (2003) · Nucleic Acids Research · doi:10.1093/nar/gkg451 · Cited by 48
Structural insights into the recognition of cisplatin and AAF-dG lesion by Rad14 (XPA)
Koch, S. C., Kuper, J., Gasteiger, K. L., Simon, N., Strasser, R., Eisen, D., Geiger, S., Schneider, S., Kisker, C., & Carell, T. (2015) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1508509112 · Cited by 47
Okuda, M., Kinoshita, M., Kakumu, E., Sugasawa, K., & Nishimura, Y. (2015) · Structure · doi:10.1016/j.str.2015.07.009 · Cited by 45
Lafrance‐Vanasse, J., Arseneault, G., Cappadocia, L., Legault, P., & Omichinski, J. G. (2013) · Nucleic Acids Research · doi:10.1093/nar/gks1321 · Cited by 44
Redefining the DNA-Binding Domain of Human XPA
Sugitani, N., Shell, S. M., Soss, S. E., & Chazin, W. (2014) · Journal of the American Chemical Society · doi:10.1021/ja503020f · Cited by 44
Self-citationSidwell, R. U., Sandison, A., Wing, J., Fawcett, H. D., Seet, J., Fisher, C., Nardò, T., Stefanini, M., Lehmann, A. R., & Cream, J. J. (2006) · British Journal of Dermatology · doi:10.1111/j.1365-2133.2006.07272.x · Cited by 42
Implications of the zinc‐finger motif found in the DNA‐binding domain of the human XPA protein
Morita, E. H., Ohkubo, T., Kuraoka, I., Shirakawa, M., Tanaka, K., & Morikawa, K. (1996) · Genes to Cells · doi:10.1046/j.1365-2443.1996.d01-252.x · Cited by 42
Juranić, P., Stepanov, A. L., Ischebeck, R., Schlott, V., Pradervand, C., Patthey, L., Radovic, M., Gorgisyan, I., Rivkin, L., Hauri, C. P., et al. (2014) · Optics Express · doi:10.1364/oe.22.030004 · Cited by 42
Yonemasu, R., Minami, M., Nakatsu, Y., TAKEUCHI, M., Kuraoka, I., Matsuda, Y., Higashi, Y., Kondoh, H., & Tanaka, K. (2005) · DNA repair · doi:10.1016/j.dnarep.2004.12.004 · Cited by 42
Saijo, M., Takedachi, A., & Tanaka, K. (2010) · Journal of Biological Chemistry · doi:10.1074/jbc.m110.172916 · Cited by 41
Identification of Novel Small Molecule Inhibitors of the XPA Protein Using in Silico Based Screening
Neher, T. M., Shuck, S. C., Liu, J., Zhang, J., & Turchi, J. J. (2010) · ACS Chemical Biology · doi:10.1021/cb1000444 · Cited by 40
Sequential and ordered assembly of a large DNA repair complex on undamaged chromatin
Ziani, S., Nagy, Z., Alekseev, S., Soutoglou, E., Egly, J., & Coin, F. (2014) · The Journal of Cell Biology · doi:10.1083/jcb.201403096 · Cited by 40
Physical and functional interaction between DDB and XPA in nucleotide excision repair
Wakasugi, M., Kasashima, H., Fukase, Y., Imura, M., Imai, R., Yamada, S., Cleaver, J. E., & Matsunaga, T. (2008) · Nucleic Acids Research · doi:10.1093/nar/gkn964 · Cited by 40
Characteristics and concepts of dynamic hub proteins in DNA processing machinery from studies of RPA
Sugitani, N., & Chazin, W. (2014) · Progress in Biophysics and Molecular Biology · doi:10.1016/j.pbiomolbio.2014.12.001 · Cited by 36
Self-citationThe crystal structure of human cyclin H
Andersen, G. R., Poterszman, A., Egly, J., Moras, D., & Thierry, J. C. (1996) · FEBS Letters · doi:10.1016/s0014-5793(96)01143-x · Cited by 36
Kellenberger, E., Dominguez, C., Fribourg, S., Wasielewski, E., Moras, D., Poterszman, A., Boelens, R., & Kieffer, B. (2005) · Journal of Biological Chemistry · doi:10.1074/jbc.m412999200 · Cited by 34
Vitorino, M., Coin, F., Zlobinskaya, O., Atkinson, R. A., Moras, D., Egly, J., Poterszman, A., & Kieffer, B. (2007) · Journal of Molecular Biology · doi:10.1016/j.jmb.2007.02.020 · Cited by 32
Crystal structure of the catalytic core of Rad2: insights into the mechanism of substrate binding
Mietus, M., Nowak, E., Jaciuk, M., Kustosz, P., Studnicka, J., & Nowotny, M. (2014) · Nucleic Acids Research · doi:10.1093/nar/gku729 · Cited by 31
Takahashi, Y., Endo, Y., Sugiyama, Y., Inoue, S., Iijima, M., Tomita, Y., Kuru, S., Takigawa, M., & Moriwaki, S. (2010) · Journal of Investigative Dermatology · doi:10.1038/jid.2010.137 · Cited by 30
Buchko, G. W. (2001) · Nucleic Acids Research · doi:10.1093/nar/29.12.2635 · Cited by 29
Camenisch, U., Dip, R., Vitanescu, M., & Naegeli, H. (2007) · DNA repair · doi:10.1016/j.dnarep.2007.07.011 · Cited by 28
Aberrant splicing and truncated-protein expression due to a newly identified XPA gene mutation
Sato, M., Nishigori, C., Yagi, T., & Takebe, H. (1996) · Mutation Research/DNA Repair · doi:10.1016/0921-8777(95)00052-6 · Cited by 27
Stabilising the DNA-binding domain of p53 by rational design of its hydrophobic core
Khoo, K., Joerger, A. C., Freund, S. M. V., & Fersht, A. R. (2009) · Protein Engineering Design and Selection · doi:10.1093/protein/gzp018 · Cited by 26
Otero, L. J., Brown, R. M., & Brown, G. K. (1998) · Human Mutation · doi:10.1002/(sici)1098-1004(1998)12:2 · Cited by 24
Messaoud, O., Rekaya, M. B., Ouragini, H., Benfadhel, S., Azaiez, H., Kéfi, R., Gouider‐Khouja, N., Mokhtar, I., Amouri, A., Boubaker, M. S., et al. (2011) · Archives of Dermatological Research · doi:10.1007/s00403-011-1190-4 · Cited by 24
Influence of centrin 2 on the interaction of nucleotide excision repair factors with damaged DNA
Krasikova, Y. S., Rechkunova, N. I., Maltseva, E. A., Craescu, C. T., Petruseva, I. O., & Lavrik, O. I. (2012) · Biochemistry (Moscow) · doi:10.1134/s0006297912040050 · Cited by 23
Hilario, E., Li, Y., Nobumori, Y., Liu, X., & Fan, L. (2013) · Acta Crystallographica Section D Biological Crystallography · doi:10.1107/s0907444912045040 · Cited by 23
A new structural insight into XPA–DNA interactions
Hilton, B., Shkriabai, N., Musich, P. R., Kvaratskhelia, M., Shell, S., & Zou, Y. (2014) · Bioscience Reports · doi:10.1042/bsr20140158 · Cited by 22
Genotype-phenotype correlation of xeroderma pigmentosum in a Chinese Han population
Sun, Z.-N., Zhang, J., Guo, Y., Ni, C., Liang, J., Cheng, R., Li, M., & Yao, Z. (2014) · British Journal of Dermatology · doi:10.1111/bjd.13429 · Cited by 22
Other Proteins Interacting with XP Proteins
Shell, S. M., & Zou, Y. (2008) · Advances in experimental medicine and biology · doi:10.1007/978-0-387-09599-8_11 · Cited by 21
Menin Localizes to Chromatin Through an ATR-CHK1 Mediated Pathway After UV-Induced DNA Damage
Farley, S. M., Gao, C., Guo, S. S., Wang, M., Jingbo, A., Lee, F., Lee, F., & Sawicki, M. P. (2006) · Journal of Surgical Research · doi:10.1016/j.jss.2006.02.021 · Cited by 18
Porter, P. C., Mellon, I., & States, J. C. (2004) · DNA repair · doi:10.1016/j.dnarep.2004.10.007 · Cited by 18
States, J. C., & Myrand, S. P. (1996) · Mutation Research/DNA Repair · doi:10.1016/0921-8777(96)00004-3 · Cited by 17
Mutational spectrum of Xeroderma pigmentosum group A in Egyptian patients
Amr, K. S., Messaoud, O., Darouti, M. E., Abdelhak, S., & El‐Kamah, G. Y. (2013) · Gene · doi:10.1016/j.gene.2013.09.125 · Cited by 17
Tanioka, M., Budiyant, A., Ueda, T., Nagano, T., Ichihashi, M., Miyachi, Y., & Nishigori, C. (2005) · Journal of Investigative Dermatology · doi:10.1111/j.0022-202x.2005.23783.x · Cited by 16
Two novel splicing mutations in the XPA gene in patients with group A xeroderma pigmentosum
Satokata, I., Uchiyama, M., & Tanaka, K. (1995) · Human Molecular Genetics · doi:10.1093/hmg/4.10.1993 · Cited by 13
Maeda, T., Sato, K., Tanaka, T., Minami, H., Taguchi, H., Mimaki, T., & Yoshikawa, K. (2000) · British Journal of Dermatology · doi:10.1046/j.1365-2133.2000.03611.x · Cited by 11
Xeroderma Pigmentosum: Low Prevalence of Germline XPA Mutations in a Brazilian XP Population
Santiago, K. M., de Nóbrega, A. F., Rocha, R., Rogatto, S., & Achatz, M. (2015) · International Journal of Molecular Sciences · doi:10.3390/ijms16048988 · Cited by 11
DNA repair, DNA replication and human disorders: A personal journey
Lehmann, A. R. (2012) · DNA repair · doi:10.1016/j.dnarep.2011.05.008 · Cited by 7
Lehmann, J., Schubert, S., Schäfer, A., Laspe, P., Haenssle, H. A., Ohlenbusch, A., Gratchev, A. N., & Emmert, S. (2014) · Journal of the European Academy of Dermatology and Venereology · doi:10.1111/jdv.12841 · Cited by 7
A novel 5 nucleotide deletion in XPA gene is associated with severe neurological abnormalities
Ghafouri‐Fard, S., Fardaei, M., & Miryounesi, M. (2015) · Gene · doi:10.1016/j.gene.2015.08.039 · Cited by 6
(2011) · SpringerReference · doi:10.1007/springerreference_37208 · Cited by 5
Research works printed but not linked: 3
- Cleaver, 1997, The DNA damage-recognition problem in human and other eukaryotic cells: the XPA damage binding protein, Biochem. J, 12, 1, 10.1042/bj3280001 · DOI
- States, 1998, Distribution of mutations in the human xeroderma pigmentosum group A gene and their relationships to the functional regions of the DNA damage recognition protein, Hum. Mutat., 12, 103, 10.1002/(SICI)1098-1004(1998)12:2<103::AID-HUMU5>3.0.CO;2-6 · DOI
- Wakasugi, 2009, Physical and functional interaction between DDB and XPA in nucleotide excision repair, Nucleic Acids Res., 37, 516, 10.1093/nar/gkn964 · DOI
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Fang, E. F., Lautrup, S., Hou, Y., Demarest, T. G., Croteau, D. L., Mattson, M. P., & Bohr, V. A. (2017) · Trends in Molecular Medicine · doi:10.1016/j.molmed.2017.08.001 · Cited by 501
The DNA damage response to transcription stress
Lans, H., Hoeijmakers, J. H. J., Vermeulen, W., & Marteijn, J. A. (2019) · Nature Reviews Molecular Cell Biology · doi:10.1038/s41580-019-0169-4 · Cited by 321
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Guo, H., Liu, H., Wu, H., Cui, H., Fang, J. S., Zuo, Z., Deng, J., Li, Y., Wang, X., & Zhao, L. (2019) · International Journal of Molecular Sciences · doi:10.3390/ijms20194690 · Cited by 191
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Kokic, G., Chernev, A., Tegunov, D., Dienemann, C., Urlaub, H., & Cramer, P. (2019) · Nature Communications · doi:10.1038/s41467-019-10745-5 · Cited by 163
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Metadata
- Authors
- Sugitani, N., Sivley, R. M., Perry, K. E., Capra, J. A., & Chazin, W. J.
- Affiliations
- Vanderbilt University (US)
- Corresponding author
- Chazin, Walter J.
- Venue
- DNA Repair
- Publisher
- Elsevier BV
- Published
- 2016-08
- Volume
- 44
- Pages
- 123-135
- ISSN
- 1568-7856 (ISSN-L)
- 1568-7864
- PMC
- PMC4958585
- OpenAlex
- W2400580371
- Cited by
- 116
- References
- 131
- Citations by year
- 2026: 10 · 2025: 5 · 2024: 10 · 2023: 5 · 2022: 11 · 2021: 14 · 2020: 18 · 2019: 15 · 2018: 14 · 2017: 13
- FWCI
- 1.30
- Type
- journal article
- Language
- en
- Open access
- green
- www.ncbi.nlm.nih.gov
- Locations
- DNA repair (publishedVersion)
- PubMed (publishedVersion)
- Europe PMC (PubMed Central) (acceptedVersion)
- PubMed Central (acceptedVersion)
- Funders
- National Institutes of Health (ES1065561, CA092584)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › DNA Repair Mechanisms
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Nuclear Structure and Function
- Health Sciences › Medicine › Pathology and Forensic Medicine › Genetic factors in colorectal cancer
- Keywords
- XPA, nucleotide excision repair, DNA repair proteins, DNA damage recognition, protein structure, protein-protein interaction, disease-associated mutations, DNA lesions
- MeSH terms
- Protein Domains, Amino Acid Sequence, Animals, DNA, DNA Damage, DNA Repair, Humans, Models, Molecular, Mutation, Protein Binding, Severity of Illness Index, Xeroderma Pigmentosum, Protein Structure, Secondary, Protein Interaction Mapping, Xeroderma Pigmentosum Group A Protein
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