Insights into the completely annotated genome of Lactobacillus buchneri CD034, a strain isolated from stable grass silage.

Heinl, Stefan; Wibberg, Daniel; Eikmeyer, Felix; Szczepanowski, Rafael; Blom, Jochen; Linke, Burkhard; Goesmann, Alexander; Grabherr, Reingard; Schwab, Helmut; Pühler, Alfred; Schlüter, Andreas

doi:10.1016/j.jbiotec.2012.03.007

Cited by 102Probiotics and Fermented FoodsGenomics and Phylogenetic StudiesRuminant Nutrition and Digestive Physiology

Insights into the completely annotated genome of Lactobacillus buchneri CD034, a strain isolated from stable grass silage.

Heinl, Stefan, Wibberg, Daniel, Eikmeyer, Felix, Szczepanowski, Rafael, Blom, Jochen, Linke, Burkhard, Goesmann, Alexander, Grabherr, Reingard +3 more·2012·Journal of Biotechnology

DOI 10.1016/j.jbiotec.2012.03.007

Open this paper in CoChat — free account

Abstract

Lactobacillus buchneri belongs to the group of heterofermentative lactic acid bacteria and is a common member of the silage microbiome. Here we report the completely annotated genomic sequence of L. buchneri CD034, a strain isolated from stable grass silage. The whole genome of L. buchneri CD034 was sequenced on the Roche Genome Sequencer FLX platform. It was found to consist of four replicons, a circular chromosome, and three plasmids. The circular chromosome was predicted to encode 2319 proteins and contains a genomic island and two prophages which significantly differ in G+C-content from the remaining chromosome. It possesses all genes for enzymes of a complete phosphoketolase pathway, whereas two enzymes necessary for glycolysis are lacking. This confirms the classification of L. buchneri CD034 as an obligate heterofermentative lactic acid bacterium. A set of genes considered to be involved in the lactate degradation pathway and genes putatively involved in the breakdown of plant cell wall polymers were identified. Moreover, several genes encoding putative S-layer proteins and two CRISPR systems, belonging to the subclasses I-E and II-A, are located on the chromosome. The largest plasmid pCD034-3 was predicted to encode 57 genes, including a putative polysaccharide synthesis gene cluster, whereas the functions of the two smaller plasmids, pCD034-1 and pCD034-2, remain cryptic. Phylogenetic analysis based on sequence comparison of the conserved marker gene rpoA reveals that L. buchneri CD034 is more closely related to Lactobacillus hilgardii strains than to Lactobacillus brevis and Lactobacillus plantarum strains. Comparison of the L. buchneri CD034 core genome to other fully sequenced and closely related members of the genus Lactobacillus disclosed a high degree of conservation between L. buchneri CD034 and the recently sequenced L. buchneri strain NRRL B-30929 and a more distant relationship to L. buchneri ATCC 11577 and L. brevis ssp. gravesensis ATCC 27305, which cluster together with L. hilgardii type strain ATCC 8290. L. buchneri CD034 genome information will certainly provide the basis for further postgenome studies with the objective to optimize application of the strain in silage production.

Integrity signals

Registry

Crossref · 10.1016/j.jbiotec.2012.03.007

Cites

72 of 72 references verified0 citation errors · 0 not checkable

Statistics

Recomputing p-values needs the paper’s full text.

Claims the paper makes

This paper’s full text isn’t openly available, so its claims and self-check weren’t run. The registry and citation checks still apply.

Claims other papers make about this one

Each is checked against this paper’s own text: does it say what the citing paper says it does?

L. hilgardii is closely related to L. buchneri, and both possess the ability to degrade lactic acid to acetic acid and to 1,2-propanediol in anaerobic conditions.
“Phylogenetic evaluation and fermentation profiling of L. hilgardii have revealed that it is closely related to L. buchneri, as both possess the ability to degrade lactic acid to acetic acid and to 1,2-propanediol in anaerobic conditions (Heinl et al., 2012; Drouin et al., 2019).”
From Lentilactobacillus hilgardii Inoculum, Dry Matter Contents at Harvest and Length of Conservation Affect Fermentation Characteristics and Aerobic Stability of Corn Silage (2021) · cites this paper as Heinl et al., 2012

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
Altschul, S. (1997) · Nucleic Acids Research · doi:10.1093/nar/25.17.3389 · Cited by 73,302 · see citing works
The neighbor-joining method: a new method for reconstructing phylogenetic trees.
Saitou, N., & Nei, M. (1987) · Molecular Biology and Evolution · doi:10.1093/oxfordjournals.molbev.a040454 · Cited by 59,962 · see citing works
PHYLIP-Phylogeny inference package (Version 3.2)
Felsenstein, J. (1989) · Cladistics · Cited by 17,848 · see citing works
tRNAscan-SE: A Program for Improved Detection of Transfer RNA Genes in Genomic Sequence
Lowe, T. M., & Eddy, S. R. (1997) · Nucleic Acids Research · doi:10.1093/nar/25.5.955 · Cited by 11,120 · see citing works
CRISPR Provides Acquired Resistance Against Viruses in Prokaryotes
Barrangou, R., Fremaux, C., Deveau, H., Richards, M., Boyaval, P., Moineau, S., Romero, D. A., & Horvath, P. (2007) · Science · doi:10.1126/science.1138140 · Cited by 6,304 · see citing works
A medium for the cultivation of lactobacilli
De MAN, J. C., ROGOSA, M., & SHARPE, M. E. (1960) · Journal of Applied Bacteriology · doi:10.1111/j.1365-2672.1960.tb00188.x · Cited by 5,311 · see citing works
The Gene Ontology (GO) database and informatics resource
Gene Ontology Consortium (2003) · Nucleic Acids Research · doi:10.1093/nar/gkh036 · Cited by 4,533 · see citing works
The COG database: an updated version includes eukaryotes
Tatusov, R. L., Fedorova, N. D., Jackson, J. D., Jacobs, A. R., Kiryutin, B., Koonin, E. V., Krylov, D. M., Mazumder, R., Mekhedov, S., Nikolskaya, A. N., et al. (2003) · BMC Bioinformatics · doi:10.1186/1471-2105-4-41 · Cited by 4,410 · see citing works
Consed: a graphical tool for sequence finishing.Preprint
Gordon, D., Abajian, C., & Green, P. (1998) · Genome Research · doi:10.1101/gr.8.3.195 · Cited by 3,706 · see citing works
Evolution and classification of the CRISPR–Cas systems
Makarova, K. S., Haft, D. H., Barrangou, R., Brouns, S. J. J., Charpentier, E., Horvath, P., Moineau, S., Mojica, F. J. M., Wolf, Y. I., Yakunin, A. F., et al. (2011) · Nature Reviews Microbiology · doi:10.1038/nrmicro2577 · Cited by 2,512 · see citing works
Improved microbial gene identification with GLIMMER
Delcher, A. L. (1999) · Nucleic Acids Research · doi:10.1093/nar/27.23.4636 · Cited by 2,493 · see citing works
The CRISPR/Cas bacterial immune system cleaves bacteriophage and plasmid DNA
Garneau, J. E., Dupuis, M.-È., Villion, M., Romero, D. A., Barrangou, R., Boyaval, P., Fremaux, C., Horvath, P., Magadán, A. H., & Moineau, S. (2010) · Nature · doi:10.1038/nature09523 · Cited by 2,336 · see citing works
CRISPRFinder: a web tool to identify clustered regularly interspaced short palindromic repeats
Grissa, I., Vergnaud, G., & Pourcel, C. (2007) · Nucleic Acids Research · doi:10.1093/nar/gkm360 · Cited by 1,877 · see citing works
Clustered regularly interspaced short palindrome repeats (CRISPRs) have spacers of extrachromosomal origin
Bolotin, A., Quinquis, B., Sorokin, A., & Ehrlich, S. D. (2005) · Microbiology · doi:10.1099/mic.0.28048-0 · Cited by 1,733 · see citing works
Comparative genomics of the lactic acid bacteria.
Makarova, K., Slesarev, A., Wolf, Y., Sorokin, A., Mirkin, B., Koonin, E., Pavlov, A., Pavlova, N., Karamychev, V., Polouchine, N., et al. (2006) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0607117103 · Cited by 1,391 · see citing works
Pathway Tools version 13.0: integrated software for pathway/genome informatics and systems biology
Karp, P. D., Paley, S. M., Krummenacker, M., Latendresse, M., Dale, J. M., Lee, T. J., Kaipa, P., Gilham, F., Spaulding, A., Popescu, L., et al. (2010) · Briefings in Bioinformatics · doi:10.1093/bib/bbp043 · Cited by 694 · see citing works
Anaerobic Conversion of Lactic Acid to Acetic Acid and 1,2-Propanediol by Lactobacillus buchneri
Oude Elferink, S. J. W. H., Krooneman, J., Gottschal, J. C., Spoelstra, S. F., Faber, F., & Driehuis, F. (2001) · Applied and Environmental Microbiology · doi:10.1128/aem.67.1.125-132.2001 · Cited by 685 · see citing works
GenDB--an open source genome annotation system for prokaryote genomes
Meyer, F. (2003) · Nucleic Acids Research · doi:10.1093/nar/gkg312 · Cited by 673 · see citing works
Evolution of rhizobia by acquisition of a 500-kb symbiosis island that integrates into a phe-tRNA gene
Sullivan, J. T., & Ronson, C. W. (1998) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.95.9.5145 · Cited by 603 · see citing works
Artemis and ACT: viewing, annotating and comparing sequences stored in a relational database
Carver, T. J., Berriman, M., Tivey, A. R., Patel, C., Böhme, U., BARRELL, B. G., Parkhill, J., & Rajandream, M. (2008) · Bioinformatics · doi:10.1093/bioinformatics/btn529 · Cited by 572 · see citing works
Acetic acid increases stability of silage under aerobic conditions
Danner, H., Holzer, M., Mayrhuber, E., & Braun, R. (2003) · Applied and Environmental Microbiology · doi:10.1128/aem.69.1.562-567.2003 · Cited by 515 · see citing works
A note on the neighbor-joining algorithm of Saitou and Nei.
Studier, J. A., & Keppler, K. J. (1988) · Molecular Biology and Evolution · doi:10.1093/oxfordjournals.molbev.a040527 · Cited by 445 · see citing works
CRITICA: coding region identification tool invoking comparative analysis
Badger, J. H., & Olsen, G. J. (1999) · Molecular Biology and Evolution · doi:10.1093/oxfordjournals.molbev.a026133 · Cited by 433 · see citing works
The Effect of Lactobacillus buchneri, Lactobacillus plantarum, or a Chemical Preservative on the Fermentation and Aerobic Stability of Corn Silage
Ranjit, N. K., & Kung, L. (2000) · Journal of Dairy Science · doi:10.3168/jds.s0022-0302(00)74912-5 · Cited by 429 · see citing works
EDGAR: A software framework for the comparative analysis of prokaryotic genomes
Blom, J., Albaum, S. P., Doppmeier, D., Pühler, A., Vorhölter, F., Zakrzewski, M., & Goesmann, A. (2009) · BMC Bioinformatics · doi:10.1186/1471-2105-10-154 · Cited by 412 · see citing works
Self-citation
Enzyme-specific profiles for genome annotation: PRIAM.
Claudel-Renard, C., Chevalet, C., Faraut, T., & Kahn, D. (2003) · Nucleic Acids Research · doi:10.1093/nar/gkg847 · Cited by 365 · see citing works
Anaerobic lactic acid degradation during ensilage of whole crop maize inoculated with Lactobacillus buchneri inhibits yeast growth and improves aerobic stability: F. DRIEHUIS ET AL.
Driehuis, F., Elferink, S. J. W. H. O., & Spoelstra, S. F. (1999) · Journal of Applied Microbiology · doi:10.1046/j.1365-2672.1999.00856.x · Cited by 344 · see citing works
Genomic Diversity and Versatility of Lactobacillus plantarum, a Natural Metabolic Engineer
Siezen, R. J., & van Hylckama Vlieg, J. E. (2011) · Microbial Cell Factories · doi:10.1186/1475-2859-10-s1-s3 · Cited by 294 · see citing works
Transfer RNA genes frequently serve as integration sites for prokaryotic genetic elements
Reiter, W., Palm, P., & Yeats, S. M. (1989) · Nucleic Acids Research · doi:10.1093/nar/17.5.1907 · Cited by 282 · see citing works
Identification of lactobacilli by pheS and rpoA gene sequence analyses
Naser, S. M., Dawyndt, P., Hoste, B., Gevers, D., Vandemeulebroecke, K., Cleenwerck, I., Vancanneyt, M., & Swings, J. (2007) · INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY · doi:10.1099/ijs.0.64711-0 · Cited by 273 · see citing works
The Effect of Treating Alfalfa with Lactobacillus buchneri 40788 on Silage Fermentation, Aerobic Stability, and Nutritive Value for Lactating Dairy Cows
Kung, L., Taylor, C. C., Lynch, M. P., & Neylon, J. M. (2003) · Journal of Dairy Science · doi:10.3168/jds.s0022-0302(03)73611-x · Cited by 209 · see citing works
A probabilistic method for identifying start codons in bacterial genomes
Süzek, B. E., Ermolaeva, M. D., Schreiber, M. J., & Salzberg, S. L. (2001) · Bioinformatics · doi:10.1093/bioinformatics/17.12.1123 · Cited by 190 · see citing works
Optimizing pentose utilization in yeast: the need for novel tools and approaches
Young, E. M., Lee, S., & Alper, H. S. (2010) · Biotechnology for Biofuels · doi:10.1186/1754-6834-3-24 · Cited by 158 · see citing works
The effects of Lactobacillus buchneri with or without a homolactic bacterium on the fermentation and aerobic stability of corn silages made at different locations
Schmidt, R. J., & Kung, L. (2010) · Journal of Dairy Science · doi:10.3168/jds.2009-2555 · Cited by 151 · see citing works
Natural populations of lactic acid bacteria associated with silage fermentation as determined by phenotype, 16S ribosomal RNA and recA gene analysis.
Pang, H., Qin, G., Tan, Z., Li, Z., Wang, Y., & Cai, Y. (2011) · Systematic and Applied Microbiology · doi:10.1016/j.syapm.2010.10.003 · Cited by 145 · see citing works
Complete genome sequencing of Agrobacterium sp. H13-3, the former Rhizobium lupini H13-3, reveals a tripartite genome consisting of a circular and a linear chromosome and an accessory plasmid but lacking a tumor-inducing Ti-plasmid
Wibberg, D., Blom, J., Jaenicke, S., Kollin, F., Rupp, O., Scharf, B. E., Schneiker-Bekel, S., Sczcepanowski, R., Goesmann, A., Setúbal, J. C., et al. (2011) · Journal of Biotechnology · doi:10.1016/j.jbiotec.2011.01.010 · Cited by 140 · see citing works
Self-citation
The effect of Lactobacillus buchneri, with or without homofermentative lactic acid bacteria, on the fermentation, aerobic stability and ruminal degradability of wheat, sorghum and maize silages
Filya, I. (2003) · Journal of Applied Microbiology · doi:10.1046/j.1365-2672.2003.02081.x · Cited by 138 · see citing works
The effect of treating whole-plant barley with Lactobacillus buchneri 40788 on silage fermentation, aerobic stability, and nutritive value for dairy cows
Taylor, C. C., Ranjit, N. J., Mills, J. A., Neylon, J. M., & Kung, L. (2002) · Journal of Dairy Science · doi:10.3168/jds.s0022-0302(02)74253-7 · Cited by 137 · see citing works
r2cat: synteny plots and comparative assembly
Husemann, P., & Stoye, J. (2009) · Bioinformatics · doi:10.1093/bioinformatics/btp690 · Cited by 132 · see citing works
Effect of applying inoculants with heterolactic or homolactic and heterolactic bacteria on the fermentation and quality of corn silage
Arriola, K. G., Kim, S. C., & Adesogan, A. T. (2011) · Journal of Dairy Science · doi:10.3168/jds.2010-3807 · Cited by 129 · see citing works
Bacterial and fungal communities of wilted Italian ryegrass silage inoculated with and without Lactobacillus rhamnosus or Lactobacillus buchneri: Bacteria and fungi in inoculated silage
Li, Y., & Nishino, N. (2011) · Letters in Applied Microbiology · doi:10.1111/j.1472-765x.2010.03000.x · Cited by 106 · see citing works
Advances in Bacterial Paracrystalline Surface Layers
Beveridge, T. J., & Koval, S. F. (1993) · Springer eBooks · doi:10.1007/978-1-4757-9032-0 · Cited by 100 · see citing works
Ensiling whole-crop wheat and corn in large containers with Lactobacillus plantarum and Lactobacillus buchneri.
Weinberg, Z., Ashbell, G., Hen, Y., Azrieli, A., Szakacs, G., & Filya, I. (2002) · Journal of Industrial Microbiology & Biotechnology · doi:10.1038/sj/jim/7000207 · Cited by 98 · see citing works
M-GCAT: interactively and efficiently constructing large-scale multiple genome comparison frameworks in closely related species
Treangen, T. J., & Messeguer, X. (2006) · BMC Bioinformatics · doi:10.1186/1471-2105-7-433 · Cited by 92 · see citing works
Major Role of NAD-Dependent Lactate Dehydrogenases in Aerobic Lactate Utilization in Lactobacillus plantarum during Early Stationary Phase
Goffin, P., Lorquet, F., Kleerebezem, M., & Pascal Hols, A. (2004) · Journal of Bacteriology · doi:10.1128/jb.186.19.6661-6666.2004 · Cited by 82 · see citing works
The effect of Lactobacillus buchneri on the fermentation, aerobic stability and ruminal degradability of maize silage
Filya, I., Sucu, E., & Karabulut, A. (2006) · Journal of Applied Microbiology · doi:10.1111/j.1365-2672.2006.03038.x · Cited by 79 · see citing works
Development of joint application strategies for two microbial gene finders
McHardy, A. C., Goesmann, A., Pühler, A., & Meyer, F. (2004) · Bioinformatics · doi:10.1093/bioinformatics/bth137 · Cited by 78 · see citing works
Self-citation
The replicons of Gram-positive bacteria: A family of broadly distributed but narrow host range plasmids
Weaver, K. E., Kwong, S. M., Firth, N., & Francia, M. V. (2009) · Plasmid · doi:10.1016/j.plasmid.2008.11.004 · Cited by 73 · see citing works
Plasmids in Lactobacillus
Wang, T.-T., & Lee, B. H. (1997) · Critical Reviews in Biotechnology · doi:10.3109/07388559709146615 · Cited by 72 · see citing works
Effects of an indigenous and a commercial Lactobacillus buchneri strain on quality of sugar cane silage
Ávila, C. L. D. S., Pinto, J., Figueiredo, H. C. P., & Schwan, R. F. (2009) · Grass and Forage Science · doi:10.1111/j.1365-2494.2009.00703.x · Cited by 72 · see citing works
Lactobacillus buchneri strain NRRL B-30929 converts a concentrated mixture of xylose and glucose into ethanol and other products
Liu, S., Skinner-Nemec, K. A., & Leathers, T. D. (2007) · Journal of Industrial Microbiology & Biotechnology · doi:10.1007/s10295-007-0267-8 · Cited by 70 · see citing works
The complete genome sequences of four new IncN plasmids from wastewater treatment plant effluent provide new insights into IncN plasmid diversity and evolution
Eikmeyer, F., Hadiati, A., Szczepanowski, R., Wibberg, D., Schneiker-Bekel, S., Rogers, L. M., Brown, C. J., Top, E. M., Pühler, A., & Schlüter, A. (2012) · Plasmid · doi:10.1016/j.plasmid.2012.01.011 · Cited by 69 · see citing works
Self-citation
Screening and Evaluation of Human Intestinal Lactobacilli for the Development of Novel Gastrointestinal Probiotics
Kõll-Klais, P., Mändar, R., Smidt, I., Hütt, P., Truusalu, K., Mikelsaar, R.-H., Štšepetova, J., Andersen, K. K., Marcotte, H., Hammarström, L. L. G., et al. (2010) · Current Microbiology · doi:10.1007/s00284-010-9653-y · Cited by 49 · see citing works
Characterization of Endogenous Plasmids from Lactobacillus salivarius UCC118
Fang, F., Flynn, S., Li, Y., Claesson, M. J., van Pijkeren, J., Collins, J. K., van Sinderen, D., & O’Toole, P. W. (2008) · Applied and Environmental Microbiology · doi:10.1128/aem.02631-07 · Cited by 48 · see citing works
The mannitol dehydrogenase gene (mdh) from Leuconostoc mesenteroides is distinct from other known bacterial mdh genes
Aarnikunnas, J., Rönnholm, K. A. R., & Palva, A. M. (2002) · Applied Microbiology and Biotechnology · doi:10.1007/s00253-002-1070-0 · Cited by 47 · see citing works
Leadbetterella byssophila gen. nov., sp. nov., isolated from cotton-waste composts for the cultivation of oyster mushroom
Weon, H., Kim, B., Kwon, S.-W., Park, I., Cha, I.-B., Tindall, B. J., Stackebrandt, E. S., Trüper, H. G., & Go, S.-J. (2005) · INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY · doi:10.1099/ijs.0.63741-0 · Cited by 45 · see citing works
Genetics of Lactic Acid Bacteria
(2003) · Springer eBooks · doi:10.1007/978-1-4615-7090-5 · Cited by 44 · see citing works
The effect of homofermentative and heterofermentative lactic acid bacteria on conservation characteristics of baled triticale–Hungarian vetch silage and lamb performance
Keleş, G., & Demirci, U. (2010) · Animal Feed Science and Technology · doi:10.1016/j.anifeedsci.2010.11.017 · Cited by 44 · see citing works
Identification and Characterization of an Active Plasmid Partition Mechanism for the Novel Lactococcus lactis Plasmid pCI2000
Kearney, K., Fitzgerald, G. F., & Seegers, J. F. M. L. (2000) · Journal of Bacteriology · doi:10.1128/jb.182.1.30-37.2000 · Cited by 43 · see citing works
The effects of Propionibacterium acidipropionici and Lactobacillus plantarum, applied at ensiling, on the fermentation and aerobic stability of low dry matter corn and sorghum silages
Filya, İ., Sucu, E., & Karabulut, A. (2006) · Journal of Industrial Microbiology & Biotechnology · doi:10.1007/s10295-005-0074-z · Cited by 42 · see citing works
Characterization of the S-Layer Glycoproteins of Two Lactobacilli
Möschl, A., Schäffer, C., Sleytr, U. B., Messner, P., Christian, R., & Schulz, G. (1993) · Springer eBooks · doi:10.1007/978-1-4757-9032-0_27 · Cited by 38 · see citing works
Complete Genome Sequence of Lactobacillus buchneri NRRL B-30929, a Novel Strain from a Commercial Ethanol Plant
Liu, S., Leathers, T. D., Copeland, A., Chertkov, O., Goodwin, L., & Mills, D. A. (2011) · Journal of Bacteriology · doi:10.1128/jb.05180-11 · Cited by 36 · see citing works
The probiotic properties ofLactobacillus buchneriP2
Zeng, X. Q., Pan, D., & Guo, Y. (2009) · Journal of Applied Microbiology · doi:10.1111/j.1365-2672.2009.04608.x · Cited by 35 · see citing works
Lactobacillus plantarum and Lactobacillus buchneri as Expression Systems: Evaluation of Different Origins of Replication for the Design of Suitable Shuttle Vectors
Späth, K., Heinl, S., Egger, E., & Grabherr, R. M. (2011) · Molecular Biotechnology · doi:10.1007/s12033-011-9471-x · Cited by 34 · see citing works
Self-citation
Characterization of Loosely Associated Material from the Cell Surface of Lactococcus lactis subsp. cremoris E8 and Its Phage-Resistant Variant Strain 398
Gopal, P. K., & Crow, V. L. (1993) · Applied and Environmental Microbiology · doi:10.1128/aem.59.10.3177-3182.1993 · Cited by 31 · see citing works
Deoxyribonucleic Acid Base Composition of Lactobacilli Determined by Thermal Denaturation
Miller, A. C., Sandine, W. E., & Elliker, P. R. (1970) · Journal of Bacteriology · doi:10.1128/jb.102.1.278-280.1970 · Cited by 24 · see citing works
Sequencing and comparative analysis of IncP-1α antibiotic resistance plasmids reveal a highly conserved backbone and differences within accessory regions
Szczepanowski, R., Eikmeyer, F., Harfmann, J., Blom, J., Rogers, L. M., Top, E. M., & Schlüter, A. (2010) · Journal of Biotechnology · doi:10.1016/j.jbiotec.2010.11.018 · Cited by 22 · see citing works
Self-citation
Sequence analysis and characterization of two cryptic plasmids derived from Lactobacillus buchneri CD034
Heinl, S., Späth, K., Egger, E., & Grabherr, R. M. (2011) · Plasmid · doi:10.1016/j.plasmid.2011.08.002 · Cited by 22 · see citing works
Self-citation
Conversion of biomass hydrolysates and other substrates to ethanol and other chemicals byLactobacillus buchneri
Liu, S., Bischoff, K. M., Hughes, S. R., Leathers, T. D., Price, N. P. J., Qureshi, N., & Rich, J. O. (2009) · Letters in Applied Microbiology · doi:10.1111/j.1472-765x.2008.02536.x · Cited by 17 · see citing works
Alcoholic fermentation and its prevention by Lactobacillus buchneri in whole crop rice silage
Nishino, N., Hattori, H., & Kishida, Y. (2007) · Letters in Applied Microbiology · doi:10.1111/j.1472-765x.2006.02105.x · Cited by 16 · see citing works
SNP haplotype tagging from DNA pools of two individuals
Hoh, J. J., Matsuda, F., Xu, P., Markovic, D., Lathrop, M. G., & Ott, J. (2003) · BMC Bioinformatics · doi:10.1186/1471-2105-4-14 · Cited by 14 · see citing works
Influence of lactic acid bacteria isolates on Staphylococcus aureus growth in skimmed milk.
Radovanović, R., & Katić, V. (2009) · Bulgarian Journal of Agricultural Science · Cited by 5 · see citing works

Flagged first, then by citations

1 of the 73 references couldn’t be matched to a known paper.

Sorted by citations

Lifestyles in transition: evolution and natural history of the genus Lactobacillus
Duar, R. M., Lin, X. B., Zheng, J., Martino, M. E., Grenier, T., Pérez-Muñoz, M. E., Leulier, F., Gänzle, M. G., & Walter, J. (2017) · FEMS Microbiology Reviews · doi:10.1093/femsre/fux030 · Cited by 554 · see citing works
Lactobacillus surface layer proteins: Structure, function and applications
Hynönen, U., & Palva, A. (2013) · Applied Microbiology and Biotechnology · doi:10.1007/s00253-013-4962-2 · Cited by 283 · see citing works
Comparative metagenomics of biogas-producing microbial communities from production-scale biogas plants operating under wet or dry fermentation conditions
Stolze, Y., Zakrzewski, M., Maus, I., Eikmeyer, F., Jaenicke, S., Rottmann, N., Siebner, C., Pühler, A., & Schlüter, A. (2015) · Biotechnology for Biofuels · doi:10.1186/s13068-014-0193-8 · Cited by 180 · see citing works
Self-citation
Metagenome analyses reveal the influence of the inoculant Lactobacillus buchneri CD034 on the microbial community involved in grass ensiling
Eikmeyer, F. G., Köfinger, P., Poschenel, A., Jünemann, S., Zakrzewski, M., Heinl, S., Mayrhuber, E., Grabherr, R., Pühler, A., Schwab, H., et al. (2013) · Journal of Biotechnology · doi:10.1016/j.jbiotec.2013.07.021 · Cited by 128 · see citing works
Self-citation
The use of Lactobacillus species as starter cultures for enhancing the quality of sugar cane silage
Ávila, C. L. S., Carvalho, B. F., Pinto, J. C., Duarte, W. F., & Schwan, R. F. (2014) · Journal of Dairy Science · doi:10.3168/jds.2013-6987 · Cited by 125 · see citing works
Antifungal effect of organic acids from lactic acid bacteria on Penicillium nordicum
Guimarães, A., Venancio, A., & Abrunhosa, L. (2018) · Food Additives & Contaminants: Part A · doi:10.1080/19440049.2018.1500718 · Cited by 122 · see citing works
Establishment and interpretation of the genome sequence of the phytopathogenic fungus Rhizoctonia solani AG1-IB isolate 7/3/14
Wibberg, D., Jelonek, L., Rupp, O., Hennig, M., Eikmeyer, F., Goesmann, A., Hartmann, A., Borriss, R., Grosch, R., Pühler, A., et al. (2012) · Journal of Biotechnology · doi:10.1016/j.jbiotec.2012.12.010 · Cited by 105 · see citing works
Self-citation
Integration event induced changes in recombinant protein productivity in Pichia pastoris discovered by whole genome sequencing and derived vector optimization
Schwarzhans, J.-P., Wibberg, D., Winkler, A., Luttermann, T., Kalinowski, J., & Friehs, K. (2016) · Microbial Cell Factories · doi:10.1186/s12934-016-0486-7 · Cited by 89 · see citing works
Self-citation
Co-fermentation Involving Saccharomyces cerevisiae and Lactobacillus Species Tolerant to Brewing-Related Stress Factors for Controlled and Rapid Production of Sour Beer
Dysvik, A., Rosa, S. L. L., Liland, K. H., Myhrer, K. S., Østlie, H. M., Rouck, G. D., Rukke, E., Westereng, B., & Wicklund, T. (2020) · Frontiers in Microbiology · doi:10.3389/fmicb.2020.00279 · Cited by 86 · see citing works
Meta-analysis of effects of inoculation with Lactobacillus buchneri, with or without other bacteria, on silage fermentation, aerobic stability, and performance of dairy cows
Arriola, K. G., de Oliveira, A. S., Jiang, Y., Kim, D. H., da Silva, H. M., Kim, S. C., Amaro, F. X., Ogunade, I. M., Sultana, H., Pech-Cervantes, A. A., et al. (2021) · Journal of Dairy Science · doi:10.3168/jds.2020-19647 · Cited by 84 · see citing works
An assemblage of Frankia Cluster II strains from California contains the canonical nod genes and also the sulfotransferase gene nodH
Nguyen, T. V., Wibberg, D., Battenberg, K., Blom, J., Heuvel, B. V., Berry, A. M., Kalinowski, J., & Pawlowski, K. (2016) · BMC Genomics · doi:10.1186/s12864-016-3140-1 · Cited by 77 · see citing works
Self-citation
Intraspecies Transfer of the Chromosomal Acinetobacter baumannii bla NDM-1 Carbapenemase Gene
Krahn, T., Wibberg, D., Maus, I., Winkler, A., Bontron, S., Sczyrba, A., Nordmann, P., Pühler, A., Poirel, L., & Schlüter, A. (2016) · Antimicrobial Agents and Chemotherapy · doi:10.1128/aac.00124-16 · Cited by 77 · see citing works
Self-citation
Selection of tropical lactic acid bacteria for enhancing the quality of maize silage
Santos, A. O., Ávila, C. L. S., & Schwan, R. F. (2013) · Journal of Dairy Science · doi:10.3168/jds.2013-6782 · Cited by 72 · see citing works
Effects of conservation period and Lactobacillus hilgardii inoculum on the fermentation profile and aerobic stability of whole corn and sorghum silages
Ferrero, F., Piano, S., Tabacco, E., & Borreani, G. (2019) · Journal of the Science of Food and Agriculture · doi:10.1002/jsfa.9463 · Cited by 67 · see citing works
Bacterial cell-envelope glycoconjugates
Messner, P., Schäffer, C., & Kosma, P. (2013) · Advances in carbohydrate chemistry and biochemistry · doi:10.1016/b978-0-12-408093-5.00006-x · Cited by 62 · see citing works
Chitosan improves the chemical composition, microbiological quality, and aerobic stability of sugarcane silage
Gandra, J. R., Oliveira, E. R., Takiya, C. S., Goes, R. H. T. B., Paiva, P. G., Oliveira, K. M. P., Gandra, E. R. S., Orbach, N. D., & Haraki, H. M. C. (2016) · Animal Feed Science and Technology · doi:10.1016/j.anifeedsci.2016.02.020 · Cited by 60 · see citing works
“Direct cloning in Lactobacillus plantarum: Electroporation with non-methylated plasmid DNA enhances transformation efficiency and makes shuttle vectors obsolete”
Späth, K., Heinl, S., & Grabherr, R. M. (2012) · Microbial Cell Factories · doi:10.1186/1475-2859-11-141 · Cited by 58 · see citing works
Self-citation
Aerobic stability of sugar‐cane silage inoculated with tropical strains of lactic acid bacteria
Carvalho, B. F., Ávila, C. L. D. S., Miguel, M. G. C. P., Pinto, J., dos Santos, M. C., & Schwan, R. F. (2014) · Grass and Forage Science · doi:10.1111/gfs.12117 · Cited by 56 · see citing works
The Sinorhizobium fredii HH103 Genome: A Comparative Analysis With S. fredii Strains Differing in Their Symbiotic Behavior With Soybean
Vinardell, J., Acosta‐Jurado, S., Zehner, S., Göttfert, M., Becker, A., Baena, I., Blom, J., Crespo‐Rivas, J. C., Goesmann, A., Jaenicke, S., et al. (2015) · Molecular Plant-Microbe Interactions · doi:10.1094/mpmi-12-14-0397-fi · Cited by 57 · see citing works
Self-citation
Effects of different source additives and wilt conditions on the pH value, aerobic stability, and carbohydrate and protein fractions of alfalfa silage
Lian, T., Zhou, H., Zhang, N., Si, B., Tu, Y., Ma, T., & Diao, Q. (2016) · Animal Science Journal · doi:10.1111/asj.12599 · Cited by 55 · see citing works
Complete genome sequence and analysis of Lactobacillus hokkaidonensis LOOC260T, a psychrotrophic lactic acid bacterium isolated from silage
Tanizawa, Y., Tohno, M., Kaminuma, E., Nakamura, Y., & Arita, M. (2015) · BMC Genomics · doi:10.1186/s12864-015-1435-2 · Cited by 55 · see citing works
Complete Genome Sequence of the Hydrogenotrophic, Methanogenic Archaeon Methanoculleus bourgensis Strain MS2 T , Isolated from a Sewage Sludge Digester
Maus, I., Wibberg, D., Stantscheff, R., Eikmeyer, F., Seffner, A., Boelter, J., Szczepanowski, R., Blom, J., Jaenicke, S., König, H., et al. (2012) · Journal of Bacteriology · doi:10.1128/jb.01292-12 · Cited by 55 · see citing works
Self-citation
Lactobacillus buchneri Genotyping on the Basis of Clustered Regularly Interspaced Short Palindromic Repeat (CRISPR) Locus Diversity
Briner, A. E., & Barrangou, R. (2013) · Applied and Environmental Microbiology · doi:10.1128/aem.03015-13 · Cited by 53 · see citing works
Microbiological and chemical profile of sugar cane silage fermentation inoculated with wild strains of lactic acid bacteria
Carvalho, B. F., Ávila, C. L. D. S., Pinto, J., Neri, J., & Schwan, R. F. (2014) · Animal Feed Science and Technology · doi:10.1016/j.anifeedsci.2014.04.003 · Cited by 53 · see citing works
Insights into the annotated genome sequence of Methanoculleus bourgensis MS2T, related to dominant methanogens in biogas-producing plants
Maus, I., Wibberg, D., Stantscheff, R., Stolze, Y., Blom, J., Eikmeyer, F., Fracowiak, J., König, H., Pühler, A., & Schlüter, A. (2014) · Journal of Biotechnology · doi:10.1016/j.jbiotec.2014.11.020 · Cited by 53 · see citing works
Self-citation
Evaluation of novel inducible promoter/repressor systems for recombinant protein expression in Lactobacillus plantarum
Heiss, S., Hörmann, A., Tauer, C., Sonnleitner, M., Egger, E., Grabherr, R. M., & Heinl, S. (2016) · Microbial Cell Factories · doi:10.1186/s12934-016-0448-0 · Cited by 50 · see citing works
Self-citation
Pre-fermentation with lactic acid bacteria in sour beer production
Dysvik, A., Liland, K. H., Myhrer, K. S., Westereng, B., Rukke, E., Rouck, G. D., & Wicklund, T. (2019) · Journal of the Institute of Brewing · doi:10.1002/jib.569 · Cited by 50 · see citing works
Complete genome sequence of the hydrogenotrophic Archaeon Methanobacterium sp. Mb1 isolated from a production-scale biogas plant
Maus, I., Wibberg, D., Stantscheff, R., Cibis, K., Eikmeyer, F., König, H., Pühler, A., & Schlüter, A. (2013) · Journal of Biotechnology · doi:10.1016/j.jbiotec.2013.10.013 · Cited by 49 · see citing works
Self-citation
Systems biology of robustness and flexibility: Lactobacillus buchneri —A show case
Heinl, S., & Grabherr, R. M. (2017) · Journal of Biotechnology · doi:10.1016/j.jbiotec.2017.01.007 · Cited by 49 · see citing works
Self-citation
Metabolic footprinting of Lactobacillus buchneri strain LA1147 during anaerobic spoilage of fermented cucumbers
Johanningsmeier, S. D., & McFeeters, R. F. (2015) · International Journal of Food Microbiology · doi:10.1016/j.ijfoodmicro.2015.08.004 · Cited by 47 · see citing works
Effects of inoculation of corn silage with Lactobacillus hilgardii and Lactobacillus buchneri on silage quality, aerobic stability, nutrient digestibility, and growth performance of growing beef cattle
Nair, J., Huaxin, N., Andrada, E., Yang, H., Chevaux, E., Drouin, P., McAllister, T. A., & Wang, Y. (2020) · Journal of Animal Science · doi:10.1093/jas/skaa267 · Cited by 45 · see citing works
Comparative Genomics Analysis of Lactobacillus mucosae from Different Niches
Jia, Y., Yang, B. K., Ross, R. P., Stanton, C., Zhang, H., Zhao, J., & Chen, W. (2020) · Genes · doi:10.3390/genes11010095 · Cited by 40 · see citing works
Draft whole genome sequence of the cyanide‐degrading bacterium P seudomonas pseudoalcaligenes CECT 5344
Luque‐Almagro, V. M., Acera, F., Igeño, M. I., Wibberg, D., Roldán, M. D., Sáez, L. P., Hennig, M., Quesada, A., Huertas, M. J., Blom, J., et al. (2012) · Environmental Microbiology · doi:10.1111/j.1462-2920.2012.02875.x · Cited by 39 · see citing works
Self-citation
Complete Genome Sequencing of Acinetobacter baumannii Strain K50 Discloses the Large Conjugative Plasmid pK50a Encoding Carbapenemase OXA-23 and Extended-Spectrum β-Lactamase GES-11
Wibberg, D., Salto, I., Eikmeyer, F., Maus, I., Winkler, A., Nordmann, P., Pühler, A., Poirel, L., & Schlüter, A. (2018) · Antimicrobial Agents and Chemotherapy · doi:10.1128/aac.00212-18 · Cited by 39 · see citing works
Self-citation
Genome-guided insight into the methylotrophy of Paracoccus aminophilus JCM 7686
Dziewit, Ł., Czarnecki, J., Prochwicz, E., Wibberg, D., Schlüter, A., Pühler, A., & Bartosik, D. (2015) · Frontiers in Microbiology · doi:10.3389/fmicb.2015.00852 · Cited by 38 · see citing works
Self-citation
Comparative Genomics Analysis of Lactobacillus ruminis from Different Niches
Wang, S., Yang, B. K., Ross, R. P., Stanton, C., Zhao, J., Zhang, H., & Chen, W. (2020) · Genes · doi:10.3390/genes11010070 · Cited by 37 · see citing works
Effect of Lactobacillus hilgardii, Lactobacillus buchneri, or their combination on the fermentation and nutritive value of sorghum silage and corn silage
Arriola, K. G., Vyas, D., Kim, D., Agarussi, M. C. N., Silva, V. P., Flores, M., Jiang, Y., Yanlin, X., Pech-Cervantes, A. A., Ferraretto, L. F., et al. (2021) · Journal of Dairy Science · doi:10.3168/jds.2020-19512 · Cited by 33 · see citing works
Protein O-glucosylation in Lactobacillus buchneri
Anzengruber, J., Pabst, M., Neumann, L., Sekot, G., Heinl, S., Grabherr, R. M., Altmann, F., Messner, P., & Schäffer, C. (2013) · Glycoconjugate Journal · doi:10.1007/s10719-013-9505-7 · Cited by 32 · see citing works
Self-citation
The effects of Lactobacillus hilgardii 4785 and Lactobacillus buchneri 40788 on the microbiome, fermentation, and aerobic stability of corn silage ensiled for various times
da Silva, É. B., Costa, D. M., Santos, E. M., Moyer, K. Z., Hellings, E., & Kung, L. (2021) · Journal of Dairy Science · doi:10.3168/jds.2020-20111 · Cited by 31 · see citing works
Biogenic amine and antibiotic resistance profiles determined for lactic acid bacteria and a propionibacterium prior to use as antifungal bioprotective cultures
Coton, M., Lebreton, M., Salas, M. L., Garnier, L., Navarri, M., Pawtowski, A., Blay, G. L., Valence, F., Coton, E., & Mounier, J. (2018) · International Dairy Journal · doi:10.1016/j.idairyj.2018.05.001 · Cited by 31 · see citing works
Phenotypic and genotypic diversity of Lactobacillus buchneri strains isolated from spoiled, fermented cucumber
Daughtry, K. V., Johanningsmeier, S. D., Sanozky-Dawes, R., Klaenhammer, T. R., & Barrangou, R. (2018) · International Journal of Food Microbiology · doi:10.1016/j.ijfoodmicro.2018.04.044 · Cited by 29 · see citing works
Lentilactobacillus hilgardii Inoculum, Dry Matter Contents at Harvest and Length of Conservation Affect Fermentation Characteristics and Aerobic Stability of Corn Silage
Ferrero, F., Tabacco, E., & Borreani, G. (2021) · Frontiers in Microbiology · doi:10.3389/fmicb.2021.675563 · Cited by 28 · see citing works
Wild Lactobacillus hilgardii (CCMA 0170) strain modifies the fermentation profile and aerobic stability of corn silage
Reis, C. B., de Oliveira dos Santos, A., Carvalho, B. F., Schwan, R. F., & Ávila, C. L. D. S. (2018) · Journal of Applied Animal Research · doi:10.1080/09712119.2017.1371609 · Cited by 29 · see citing works
Production of lactate and acetate by Lactobacillus coryniformis subsp. torquens DSM 20004 T in comparison with Lactobacillus amylovorus DSM 20531 T
Slavica, A., Trontel, A., Jelovac, N., Kosovec, Ž., Šantek, B., & Novak, S. (2015) · Journal of Biotechnology · doi:10.1016/j.jbiotec.2015.01.014 · Cited by 27 · see citing works
Lipoteichoic acid mediates binding of a Lactobacillus S-layer protein
Bönisch, E., Oh, Y., Anzengruber, J., Hager, F. F., López-Guzmán, A., Zayni, S., Hinterdorfer, P., Kosma, P., Messner, P., Duda, K., et al. (2018) · Glycobiology · doi:10.1093/glycob/cwx102 · Cited by 27 · see citing works
Identification of Oxygen-Responsive Transcripts in the Silage Inoculant Lactobacillus buchneri CD034 by RNA Sequencing
Eikmeyer, F., Heinl, S., Marx, H., Pühler, A., Grabherr, R. M., & Schlüter, A. (2015) · PLoS ONE · doi:10.1371/journal.pone.0134149 · Cited by 25 · see citing works
Self-citation
Lactobacillus kefiri shows inter-strain variations in the amino acid sequence of the S-layer proteins
Malamud, M., Carasi, P., Bronsoms, S., Trejo, S., & Serradell, M. D. L. A. (2016) · Antonie van Leeuwenhoek · doi:10.1007/s10482-016-0820-4 · Cited by 21 · see citing works
Effect of amylases and storage length on losses, nutritional value, fermentation, and microbiology of silages of corn and sorghum kernels
Fernandes, T., da Silva, K. T., Carvalho, B. F., Schwan, R. F., Pereira, R. A. N., Pereira, M. N., & Ávila, C. L. D. S. (2022) · Animal Feed Science and Technology · doi:10.1016/j.anifeedsci.2022.115227 · Cited by 24 · see citing works
Complete genome sequence of the cyanide-degrading bacterium Pseudomonas pseudoalcaligenes CECT5344
Wibberg, D., Luque‐Almagro, V. M., Igeño, M. I., Bremges, A., Roldán, M. D., Merchán, F., Sáez, L. P., Guijo, M. I., Manso, M. I., Macías, D., et al. (2014) · Journal of Biotechnology · doi:10.1016/j.jbiotec.2014.02.004 · Cited by 23 · see citing works
Self-citation
IncP-1β plasmids of Comamonas sp. and Delftia sp. strains isolated from a wastewater treatment plant mediate resistance to and decolorization of the triphenylmethane dye crystal violet
Stolze, Y., Eikmeyer, F., Wibberg, D., Brandis, G., Karsten, C., Krahn, I., Schneiker-Bekel, S., Viehöver, P., Barsch, A., Keck, M., et al. (2012) · Microbiology · doi:10.1099/mic.0.059220-0 · Cited by 23 · see citing works
Self-citation
New inoculants on maize silage fermentation
Assis, F. G. D. V. D., Ávila, C. L. D. S., Pinto, J. C., & Schwan, R. F. (2014) · Revista Brasileira de Zootecnia · doi:10.1590/s1516-35982014000800001 · Cited by 22 · see citing works
Characterization of the SN35N Strain-Specific Exopolysaccharide Encoded in the Whole Circular Genome of a Plant-Derived Lactobacillus plantarum
Noda, M., Shiraga, M., Kumagai, T., Danshiitsoodol, N., & Sugiyama, M. (2018) · Biological and Pharmaceutical Bulletin · doi:10.1248/bpb.b17-00840 · Cited by 23 · see citing works
Effect of the inoculation of sugarcane silage with Lactobacillus hilgardii and Lactobacillus buchneri on feeding behavior and milk yield of dairy cows1
Santos, W. P., Ávila, C. L. S., Pereira, M. N., Schwan, R. F., Lopes, N. M., & Pinto, J. C. (2017) · Journal of Animal Science · doi:10.2527/jas2017.1526 · Cited by 21 · see citing works
Complete genome analysis of Clostridium bornimense strain M2/40T: A new acidogenic Clostridium species isolated from a mesophilic two-phase laboratory-scale biogas reactor
Tomazetto, G., Hahnke, S., Koeck, D. E., Wibberg, D., Maus, I., Pühler, A., Klocke, M., & Schlüter, A. (2015) · Journal of Biotechnology · doi:10.1016/j.jbiotec.2015.08.001 · Cited by 21 · see citing works
Self-citation
IncH-Type Plasmid Harboring bla CTX-M-15 , bla DHA-1 , and qnrB4 Genes Recovered from Animal Isolates
Schlüter, A., Nordmann, P., Bonnin, R. A., Millemann, Y., Eikmeyer, F., Wibberg, D., Pühler, A., & Poirel, L. (2014) · Antimicrobial Agents and Chemotherapy · doi:10.1128/aac.02695-14 · Cited by 21 · see citing works
Self-citation
Exploitation of acid-tolerant microbial species for the utilization of low-cost whey in the production of acetic acid and propylene glycol
Veeravalli, S. S., & Mathews, A. P. (2018) · Applied Microbiology and Biotechnology · doi:10.1007/s00253-018-9174-3 · Cited by 21 · see citing works
Comparative genomics of eight Lactobacillus buchneri strains isolated from food spoilage
Nethery, M. A., Henriksen, E. D., Daughtry, K. V., Johanningsmeier, S. D., & Barrangou, R. (2019) · BMC Genomics · doi:10.1186/s12864-019-6274-0 · Cited by 21 · see citing works
Complete Genome Sequence of Ovine Mycobacterium avium subsp. paratuberculosis Strain JIII-386 (MAP-S/type III) and Its Comparison to MAP-S/type I, MAP-C, and M. avium Complex Genomes
Wibberg, D., Price-Carter, M. L., Rückert, C., Blom, J., & Möbius, P. (2020) · Microorganisms · doi:10.3390/microorganisms9010070 · Cited by 21 · see citing works
Self-citation
Genetic engineering in Actinoplanes sp. SE50/110 − development of an intergeneric conjugation system for the introduction of actinophage-based integrative vectors
Gren, T., Ortseifen, V., Wibberg, D., Schneiker-Bekel, S., Bednarz, H., Niehaus, K., Zemke, T., Persicke, M., Pühler, A., & Kalinowski, J. (2016) · Journal of Biotechnology · doi:10.1016/j.jbiotec.2016.05.012 · Cited by 20 · see citing works
Self-citation
Using glycolysis enzyme sequences to inform Lactobacillus phylogeny
Brandt, K., & Barrangou, R. (2018) · Microbial Genomics · doi:10.1099/mgen.0.000187 · Cited by 19 · see citing works
Effect of Lactobacillus plantarum and Lactobacillus buchneri addition on fermentation, bacterial community and aerobic stability in lucerne silage
Si, H., Liu, H., Li, Z., Nan, W., Jin, C., Sui, Y., & Li, G. (2018) · Animal Production Science · doi:10.1071/an16008 · Cited by 20 · see citing works
Finished genome sequence and methylome of the cyanide-degrading Pseudomonas pseudoalcaligenes strain CECT5344 as resolved by single-molecule real-time sequencing
Wibberg, D., Bremges, A., Dammann-Kalinowski, T., Maus, I., Igeño, M. I., Vogelsang, R., König, C., Luque‐Almagro, V. M., Roldán, M. D., Sczyrba, A., et al. (2016) · Journal of Biotechnology · doi:10.1016/j.jbiotec.2016.04.008 · Cited by 18 · see citing works
Self-citation
Lentilactobacillus buchneri domination during the fermentation of Japanese traditional fermented fish (funazushi)
Tanabe, K., Monguchi, M., Inoue, R., Zamami, R., Nakanishi, R., Manabe, A., Oe, K., Komatsuzaki, N., & Shima, J. (2022) · Food Science & Nutrition · doi:10.1002/fsn3.3002 · Cited by 16 · see citing works
The Prophylactic Protection of Salmonella Typhimurium Infection by Lentilactobacillus buchneri GX0328-6 in Mice
Shi, Y., Peng, H., Liao, Y., Li, J., Yin, Y., Peng, H., Wang, L., Tan, Y., Li, C., Bai, H., et al. (2023) · Probiotics and Antimicrobial Proteins · doi:10.1007/s12602-023-10145-8 · Cited by 16 · see citing works
Effect of Fermented Concentrate on Ruminal Fermentation, Ruminal and Fecal Microbiome, and Growth Performance of Beef Cattle
Lee, S., Ryu, C. H., Back, Y. C., Lee, S. D., & Kim, H. R. (2023) · Animals · doi:10.3390/ani13233622 · Cited by 16 · see citing works
Assembly of the Lactuca sativa, L. cv. Tizian draft genome sequence reveals differences within major resistance complex 1 as compared to the cv. Salinas reference genome
Verwaaijen, B., Wibberg, D., Nelkner, J., Gordin, M., Rupp, O., Winkler, A., Bremges, A., Blom, J., Grosch, R., Pühler, A., et al. (2017) · Journal of Biotechnology · doi:10.1016/j.jbiotec.2017.12.021 · Cited by 16 · see citing works
Self-citation
Lactobacillus buchneri subsp. silagei subsp. nov., isolated from rice grain silage
Tanizawa, Y., Kobayashi, H., Nomura, M., Sakamoto, M., Arita, M., Nakamura, Y., Ohkuma, M., & Tohno, M. (2020) · INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY · doi:10.1099/ijsem.0.004138 · Cited by 15 · see citing works
Fermentative production of enantiomerically pure S-1,2-propanediol from glucose by engineered E. coli strain
Zhu, L., Guan, X., Xie, N., Wang, L., Yu, B., & Ma, Y. (2015) · Applied Microbiology and Biotechnology · doi:10.1007/s00253-015-7034-y · Cited by 13 · see citing works
Biochemical characterization of the major N-acetylmuramidase from Lactobacillus buchneri
Anzengruber, J., Courtin, P., Claes, I. J. J., Debreczeny, M., Hofbauer, S., Obinger, C., Chapot, M.-P., Vanderleyden, J., Messner, P., & Schäffer, C. (2014) · Microbiology · doi:10.1099/mic.0.078162-0 · Cited by 13 · see citing works
Natural Plasmids in a Swiss Fermented Milk and Colostrum Product assessed by Microbiome Array
Pacini, S., & Ruggiero, M. (2019) · Madridge Journal of Immunology · doi:10.18689/mjim-1000123 · Cited by 13 · see citing works
Characterization of the Lactobacillus plantarum plasmid pCD033 and generation of the plasmid free strain L. plantarum 3NSH
Heiss, S., Grabherr, R. M., & Heinl, S. (2015) · Plasmid · doi:10.1016/j.plasmid.2015.05.004 · Cited by 12 · see citing works
Self-citation
Silage Fermentation: A Potential Microbial Approach for the Forage Utilization of Cyperus esculentus L. By-Product
Sun, J., Wang, T., Huang, F., Liu, Y., Shi, W., Ma, C., & Zhong, J. (2021) · Fermentation · doi:10.3390/fermentation7040273 · Cited by 11 · see citing works
Comparison ofrpoAandpheSGene Sequencing to 16S rRNA Gene Sequencing in Identification and Phylogenetic Analysis of LAB from Probiotic Food Products and Supplements
Nyanzi, R., Jooste, P. J., Cameron, M., & Witthuhn, R. C. (2013) · Food Biotechnology · doi:10.1080/08905436.2013.838783 · Cited by 10 · see citing works
Characterization of Trypsin-Like Protease of Lactobacillus plantarum FNCC 0270
Margono, T., Sumaryono, W., Malik, A., & Sadikin, M. (2014) · HAYATI Journal of Biosciences · doi:10.4308/hjb.21.2.87 · Cited by 10 · see citing works
Methylotrophic yeast, lactic acid bacteria and glycerine as additives for sugarcane silage
Carvalho, B. F., Ávila, C. L. D. S., Pereira, M. N., & Schwan, R. F. (2016) · Grass and Forage Science · doi:10.1111/gfs.12248 · Cited by 9 · see citing works
Changes in carbohydrate and protein fractions during ensiling of alfalfa treated with previously fermented alfalfa juice or lactic acid bacteria inoculants
Tao, L., Zhou, H., Zhang, N. F., Si, B., Tu, Y., Ma, T., & Diao, Q. (2016) · Animal Production Science · doi:10.1071/an15067 · Cited by 7 · see citing works
Silage quality and biogas production from Spartina pectinata L. fermented with a novel xylan-degrading strain of Lactobacillus buchneri M B/00077
Kupryś-Caruk, M., Choińska, R., Dekowska, A., & Piasecka‐Jóźwiak, K. (2021) · Scientific Reports · doi:10.1038/s41598-021-92686-y · Cited by 7 · see citing works
Polar-Region Soils as Novel Reservoir of Lactic Acid Bacteria from the Genus Carnobacterium
Kosiorek, K., Grzesiak, J., Gawor, J., Sałańska, A., & Aleksandrzak‐Piekarczyk, T. (2024) · International Journal of Molecular Sciences · doi:10.3390/ijms25179444 · Cited by 5 · see citing works
Effect of Homofermentative and Heterofermentative Lactic Acid Bacteria on the Quality and Aerobic Stability of Silage : Meta-Analysis
Cho, S., Kang, J. S., Cho, K. J., Lee, K. H., Kwon, C. H., Song, J., Lee, K., Kim, S. Y., & Kim, E. J. (2014) · Han-guk choji josaryo hakoeji · doi:10.5333/kgfs.2014.34.4.247 · Cited by 5 · see citing works
Effects of Bacterial Inoculants and Organic Acids on Silage Quality : Meta-analysis
Cho, S., Kwon, C. H., & Kim, E. J. (2014) · Han-guk choji josaryo hakoeji · doi:10.5333/kgfs.2014.34.2.94 · Cited by 4 · see citing works
Complete mitochondrial genome of the scleractinian coral Porites rus
Celis, S., Wibberg, D., Winkler, A., Wilke, T., & Kalinowski, J. (2016) · Mitochondrial DNA Part A · doi:10.3109/19401736.2015.1079860 · Cited by 4 · see citing works
Self-citation
Corrigendum to : Effect of Lactobacillus plantarum and Lactobacillus buchneri addition on fermentation, bacterial community and aerobic stability in lucerne silage
Si, H., Liu, H., Li, Z., Nan, W., Jin, C., Sui, Y., & Li, G. (2019) · Animal Production Science · doi:10.1071/an16008_co · Cited by 4 · see citing works
Comprehensive Safety Assessment of Lentilactobacillus buchneri KU200793 as a Potential Probiotic
Kim, S., Jeong, H., Lee, N., Kang, D., Paik, H., Park, Y., & Lee, J. H. (2025) · Microorganisms · doi:10.3390/microorganisms13092067 · Cited by 3 · see citing works
Effect of Lactic acid bacteria and Enzyme Supplementation on Fermentative Patterns of Ensiling Silages, Their In vitro Ruminal Fermentation, and Digestibility
Lee, A.-L., Shin, S.-J., Yang, J., Cho, S., & Choi, N. (2016) · Han-guk choji josaryo hakoeji · doi:10.5333/kgfs.2016.36.1.7 · Cited by 3 · see citing works
Estabilidade aeróbia em silagens de gramíneas tropicais tratadas com Lactobacillus buchneri
Coutinho, D. N., Alves, W. S., Macêdo, A. J. D. S., dos Anjos, A. J., Freitas, C. A. S., & de Sena, H. P. (2020) · Research Society and Development · doi:10.33448/rsd-v9i11.10530 · Cited by 2 · see citing works
Isolation of lactic acid bacteria and quantification of Lentilactobacillus buchneri using qPCR in sorghum silage inoculated with native strains in tropical conditions
Roseira, J. P. S., Pereira, O. G., da Silveira, T. C., Pinho, R. M. A., Cascardo, R. D. S., de Paula, R. A., Alfenas‐Zerbini, P., Mantovani, H. C., Alves, W. S., & Ribeiro, K. G. (2025) · Anais da Academia Brasileira de Ciências · doi:10.1590/0001-3765202520240783 · Cited by 1 · see citing works
Effect of the inoculation of sugarcane silage with Lactobacillus hilgardii and Lactobacillus buchneri on feeding behavior and milk yield of dairy cows1
dos Santos, W. P., Ávila, C. L. D. S., Pereira, M. N., Schwan, R. F., Lopes, N. M., & Pinto, J. (2017) · Journal of Animal Science · doi:10.2527/jas.2017.1526 · Cited by 22 · see citing works
Comparative genomics on gene and single nucleotide level
Blom, J. (2013) · Publikationen an der Universität Bielefeld (Universität Bielefeld) · Cited by 1 · see citing works
Self-citation
Potencialidad probiótica de lactobacilos con capa S
Carasi, P. (2014) · doi:10.35537/10915/43573
Journal of Biotechnology opens the new section “Genome Announcement”
Pühler, A. (2013) · Journal of Biotechnology · doi:10.1016/j.jbiotec.2013.08.016
Self-citation
Draft Genome Sequence of the Vaccination Strain Mycobacterium bovis BCG S4-Jena
Wibberg, D., Winkler, A., Straube, E., Karrasch, M., Keller, P. M., & Kalinowski, J. (2016) · Genome Announcements · doi:10.1128/genomea.00296-16
Self-citation
Proteínas superficiales de bacterias lácticas con potencialidad biotecnológica: estudios estructurales y funcionales de las proteínas de capa S de Lactobacillus kefiri
Malamud, M. (2019) · doi:10.35537/10915/77909
Fermentação e estabilidade aeróbia de silagens de milho inoculadas com diferentes cepas de Lactobacillus buchneri
Leite, G. D. O. (2021) · doi:10.47328/ufvbbt.2021.226
Efeito de núcleo mineral e de Lentilactobacillus buchneri sobre perfil fermentativo de silagem de ração em mistura total
Rezende, E. J. (2022) · doi:10.47328/ufvbbt.2022.736
Effect of new strains of Lentilactobacillus buchneri as inoculants in sorghum silage on the fermentative profile, aerobic stability, and voluntary intake in lambs
Alves, W. S., Pereira, O. G., Macêdo, A. J. D. S., Leite, G. D. O., da Silva, V. P., Leite, P. S. D. S., Ribeiro, K. G., & Filho, S. D. C. V. (2023) · New Zealand Journal of Agricultural Research · doi:10.1080/00288233.2023.2287717
Uso de Lentilactobacillus buchneri e enzimas fibrolíticas na silagem de sorgo
Teixeira, T. N. (2023) · doi:10.47328/ufvbbt.2023.726
Diversidade microbiana, perfil fermentativo e estabilidade aeróbia de silagem de milho inoculada com cepas de Lentilactobacillus buchneri em diferentes períodos de armazenamentos
Freitas, G. D. (2024) · doi:10.47328/ufvbbt.2024.420
Lentilactobacillus
Watanabe, K., & Huang, C. (2025) · Bergey's Manual of Systematics of Archaea and Bacteria · doi:10.1002/9781118960608.gbm02114
Complete mitochondrial genomes of the Prototheca genus: comparative genomics and evolutionary insights
Wibberg, D., Bakuła, Z., García-Cunchillos, I., Gawor, J., Gromadka, R., Karnkowska, A., Bielecki, J., & Jagielski, T. (2025) · BMC Genomics · doi:10.1186/s12864-025-11952-9
Self-citation
Production d'ingrédients laitiers fonctionnalisés par des microorganismes producteurs de composés antifongiques
Garnier, L. (2017) · doi:10.70675/9c978bbaz2b6cz4397zba5fz9b50652b993b

Sequence analysis and characterization of two cryptic plasmids derived from Lactobacillus buchneri CD034
Heinl, S., Späth, K., Egger, E., & Grabherr, R. M. (2011) · Plasmid · doi:10.1016/j.plasmid.2011.08.002 · Cited by 22 · see citing works
Self-citation
Untersuchung der Rolle von Lactobacillus buchneri CD034 bei der Bildung von Grassilage mittels nukleinsäurebasierter Methoden
Eikmeyer, F. (2015) · PUB – Publications at Bielefeld University (Bielefeld University)
Self-citation
Comparative genomics of eight Lactobacillus buchneri strains isolated from food spoilage
Nethery, M. A., Henriksen, E. D., Daughtry, K. V., Johanningsmeier, S. D., & Barrangou, R. (2019) · BMC Genomics · doi:10.1186/s12864-019-6274-0 · Cited by 21 · see citing works
Complete Genome Sequence of Lactobacillus buchneri NRRL B-30929, a Novel Strain from a Commercial Ethanol Plant
Goodwin, L., & Mills, D. A. (2011)
Lactobacillus buchneri subsp. silagei subsp. nov., isolated from rice grain silage
Tanizawa, Y., Kobayashi, H., Nomura, M., Sakamoto, M., Arita, M., Nakamura, Y., Ohkuma, M., & Tohno, M. (2020) · INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY · doi:10.1099/ijsem.0.004138 · Cited by 15 · see citing works

Authors: Heinl, S., Wibberg, D., Eikmeyer, F., Szczepanowski, R., Blom, J., Linke, B., Goesmann, A., Grabherr, R., Schwab, H., Pühler, A., & Schlüter, A.
Affiliations: BOKU University (AT)
Bielefeld University (DE)
Graz University of Technology (AT)
Corresponding author: Heinl, Stefan
ORCID: Heinl, Stefan
Wibberg, Daniel
Blom, Jochen
Goesmann, Alexander
Grabherr, Reingard
Schwab, Helmut
Pühler, Alfred
Schlüter, Andreas
Venue: Journal of Biotechnology
Publisher: Elsevier BV
Published: 2012-10
Volume: 161
Issue: 2
Pages: 153-166
ISSN: 0168-1656 (ISSN-L)
DOI: 10.1016/j.jbiotec.2012.03.007
OpenAlex: W2025574112
Semantic Scholar: a97f9594accb47a0700b6581f49251f760a0c4ee
Cited by: 102
References: 73
Citations by year: 2026: 2 · 2025: 4 · 2024: 2 · 2023: 4 · 2022: 3 · 2021: 7 · 2020: 7 · 2019: 5 · 2018: 9 · 2017: 8 · 2016: 14 · 2015: 10 · 2014: 11 · 2013: 11 · 2012: 5
FWCI: 18.19
Type: journal article
Language: en
Open access: closed
Licence: www.elsevier.com/tdm/userlicense/1.0/ (tdm)
Locations: Journal of Biotechnology (publishedVersion)
PubMed (publishedVersion)
PUB – Publications at Bielefeld University (Bielefeld University) (submittedVersion)
Publikationen an der Universität Bielefeld (Universität Bielefeld) (submittedVersion)
Funders: European Commission
Christian Doppler Forschungsgesellschaft
Topics: Life Sciences › Agricultural and Biological Sciences › Food Science › Probiotics and Fermented Foods
Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Genomics and Phylogenetic Studies
Life Sciences › Agricultural and Biological Sciences › Agronomy and Crop Science › Ruminant Nutrition and Digestive Physiology
Keywords: Lactobacillus buchneri, genome annotation, grass silage, heterofermentative lactic acid bacteria, phosphoketolase pathway, plant cell wall degradation, S-layer proteins, CRISPR systems, plasmids, Lactobacillus hilgardii, phylogenetic analysis
MeSH terms: Anaerobiosis, Base Sequence, DNA Transposable Elements, Poaceae, Lactobacillus, Molecular Sequence Data, Phylogeny, Silage, Genome, Bacterial, Sequence Analysis, DNA, Prophages, Metabolic Networks and Pathways, Molecular Sequence Annotation

About these checks

Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.

Statistics and arithmetic are recomputed, not judged.

Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.

What counts as a claim ›How we measure confidence ›How we check this ›

Are you an author, or do you see a problem with this page? Request a review

Insights into the completely annotated genome of Lactobacillus buchneri CD034, a strain isolated from stable grass silage.

Abstract

Integrity signals

Claims the paper makes

Claims other papers make about this one

Cites

Cited by

Related

Record

About these checks