Neural control and modulation of swimming speed in the larval zebrafish
Open accessAbstract
Summary Vertebrate locomotion at different speeds is driven by descending excitatory connections to central pattern generators in the spinal cord. To investigate how these inputs determine locomotor kinematics, we used whole-field visual motion to drive zebrafish to swim at different speeds. Larvae match the stimulus speed by utilizing more locomotor events, or modifying kinematic parameters such as the duration and speed of swimming bouts, the tail-beat frequency, and choice of gait. We used laser ablations, electrical stimulation, and activity recordings in descending neurons of the nucleus of the medial longitudinal fasciculus (nMLF) to dissect their contribution to controlling forward movement. We found that the activity of single identified neurons within the nMLF is correlated with locomotor kinematics, and modulates both the duration and oscillation frequency of tail movements. By identifying the contribution of individual supraspinal circuit elements to locomotion kinematics we build a better understanding of how the brain controls movement.
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Claims the paper makes
22 of 64 cited sources checked · 13 supported · 0 flagged · accuracy not yet measured
- Premisecitation
In a survey of reticulospinal activity, the nMLF was the strongest group responding to visual stimuli that drive forward swimming.
“In a survey of RS activity in response to visual stimuli driving the OMR (Orger et al., 2008), the most prominent group activated by visual stimulation that specifically elicits forward-directed locomotion was found in the nMLF”
Quote in the paperNot a substantial claim1 of 1 sources checked- cites Orger et al., 2008 source
- Interpretationcitation
This recruitment pattern matches behavior in a restrained motor learning assay in which larvae adjusted output when it did not match expectation.
“This phenomenon was consistent with behavioral responses in a restrained motor learning assay, where larvae adjusted their motor output if it did not match their expectation (Ahrens et al., 2012; Portugues and Engert, 2011).”
Quote in the paperNot a substantial claim2 of 2 sources checked- cites Ahrens et al., 2012 source
- cites Portugues and Engert, 2011 source
The Abstract and Discussion report that restrained larvae changed their motor output in response to altered visual feedback. But the Discussion presents a mismatch between expected and actual feedback as a possible explanation, not an established cause of those adjustments. (LLM, conf=0.84)
Experimental — accuracy not yet measured
- Premisecitation
The OMR circuit starts in the retina, which sends signals to the brain through ten identified RGC arborization fields.
“The complete circuit required to perform the OMR begins with the retina, which relays signals to the brain via 10 identified retinal ganglion cell (RGC) arborization fields (Figure 8) (Burrill and Easter, 1994; Robles et al., 2011).”
Quote in the paperNot a substantial claim1 of 2 sources checked- cites Burrill and Easter, 1994 source
- cites Robles et al., 2011 source
The Introduction identifies the optomotor response as a visually guided behavior, and ‘Implications for Tectal Information Processing’ describes retinal ganglion cell axons projecting to the optic tectum. Neither passage identifies ten RGC arborization fields or establishes that the OMR circuit passes through all ten. (LLM, conf=0.85)
Experimental — accuracy not yet measured
- Premisecitation
Ablating large nMLF cells impairs feeding in larvae.
“since ablation of large cells impairs the ability of larvae to feed (Gahtan et al., 2005).”
Quote in the paperNot a substantial claim1 of 1 sources checked- cites Gahtan et al., 2005 source
- Premisecitation
In zebrafish, some excitatory spinal interneuron classes are active only during fast or only during slow swimming.
“In zebrafish some excitatory classes of spinal interneurons are exclusively active during fast or slow swimming (McLean et al., 2008; Ritter et al., 2001).”
Quote in the paperNot a substantial claim2 of 2 sources checked- cites McLean et al., 2008 source
The Results sections on MCoD inhibition and CiD activity report that MCoDs stop firing at high swimming frequencies, while dorsal CiDs are active at high frequencies and fall silent as swimming slows. But the paper describes the two classes’ activity as largely complementary, with occasional overlap, and reports that activity shifts within the CiD class. “Exclusively” overstates that pattern. (LLM, conf=0.83)
Experimental — accuracy not yet measured - cites Ritter et al., 2001 source
The Behavior in agar section says the swimming trials covered only the lower half of the natural frequency range, and the Discussion reports that MCoDs were active during swimming but not escape. It does not establish classes exclusively active during fast versus slow swimming; the Discussion presents CiD recruitment during very fast swimming only as a possibility. (LLM, conf=0.88)
Experimental — accuracy not yet measured
- Premisecitation
The OMR continues even without the optic tectum.
“The OMR is known to persist in the absence of the optic tectum, the largest of these processing areas (Roeser and Baier, 2003)”
Quote in the paperSubstantial claim1 of 1 sources checked- cites Roeser and Baier, 2003 source
The OMR results report that most larval zebrafish retained a vigorous response after bilateral tectum ablation. But the “OMR without a tectum” section specifies that the ablation left deeper parts of the tectum intact, so the paper does not establish persistence in the complete absence of the optic tectum. Page numbers were not provided in our copy. (LLM, conf=0.88)
Experimental — accuracy not yet measured
- Premisecitation
The nMLF has been linked to other visually dependent behaviors, including prey tracking and capture.
“The nMLF has been implicated in other behaviors reliant on vision such as prey tracking and capture (Bianco et al., 2011; Borla et al., 2002; Westphal and O'Malley, 2013)”
Quote in the paperNot a substantial claim2 of 3 sources checked- cites Bianco et al., 2011 source
The Introduction and Discussion describe visually guided prey tracking and capture in larval zebrafish, but the passages do not link those behaviors to the nMLF. Searches for “nMLF” and “nucleus of the medial longitudinal fasciculus” found no passage making that link. (LLM, conf=0.73)
Experimental — accuracy not yet measured - cites Borla et al., 2002 source
- cites Westphal and O'Malley, 2013 source
- Premisecitation
Excitatory spinal interneurons are recruited in a dorso-ventral pattern according to locomotion intensity.
“Like motor neurons, excitatory spinal interneurons are also recruited in a dorso-ventral pattern depending on the intensity of locomotion (Bhatt et al., 2007; McLean et al., 2007; McLean et al., 2008).”
Quote in the paperNot a substantial claim1 of 3 sources checked - Findingown data
The average distance covered per bout grows with grating speed.
“We observed an increase in average distance per bout with grating speed (Figure 1E).”
Quote in the paperSubstantial claim - Findingown data
The proportion of fast bouts rises continuously from about 4% for slow stimuli to about 50% for stimuli at 20 mm/s or faster.
“The fraction of fast bouts elicited by a drifting grating changes continuously from ~4% for slow moving stimuli, to ~50% for stimuli moving at 20 mm/s or faster.”
Quote in the paperSubstantial claim - Findingown data
Calcium imaging confirms that nMLF cells are activated during this electrically induced locomotion.
“Calcium imaging using calcium green dextran (Figure 5B) verified that nMLF cells were activated during this induced locomotion.”
Quote in the paperSubstantial claim - Findingown data
The maximum Δf/f of the nMLF calcium response changes across grating speeds.
“The maximum Δf/f of the calcium response changed across speeds (Figure 6D)”
Quote in the paperSubstantial claim - Findingown data
There is a marked difference between MeM cells and the other large nMLF cells, the MeL cells.
“We observed a marked difference between the MeM cells and the other three types of large nMLF cells, the MeL cells.”
Quote in the paperNot a substantial claim - Findingown data
Bout duration becomes longer as grating speed rises from 0 to 10 mm/s.
“Some of this could be accounted for by the lengthening of bout duration as grating speed increased within the range 0-10 mm/s (Figure 1F)”
Quote in the paperNot a substantial claim - Findingown data
The larva keeps a tight correlation between its own swimming speed and moving gratings up to 20 mm/s.
“Despite this variety of factors that determine swimming speed, the larva is able to maintain a tight correlation of its own swimming speed with that of moving gratings up to 20 mm/s.”
Quote in the paperSubstantial claim - Findingown data
In fast trials, larvae often start with slow bouts and recruit fast bouts only later.
“In fast trials, larvae often began with slow bouts and only later recruited fast bouts.”
Quote in the paperSubstantial claim - Findingown data
Only larvae with nMLF ablation, compared with their pre-ablation state, show a consistent significant deficit in reaching high swimming speeds in response to visual stimuli.
“Compared with pre-ablation larvae, only the nMLF-ablated larvae showed a consistent and significant deficit in achieving high speeds of swimming in response to visual stimuli (Figure 4C-D, Figure S3).”
Quote in the paperSubstantial claim - Findingown data
Larval zebrafish adjust their swimming speed to keep position relative to optomotor gratings moving at 0 to 40 mm/s.
“In response to optomotor gratings moving at speeds from 0 to 40 mm/s, larval zebrafish adjust their locomotor speed to maintain their position relative to the moving grating.”
Quote in the paperSubstantial claim - Findingown data
Restrained larvae usually produce bouts with maximum tail-beat frequency near 30 Hz even at fast grating speeds.
“For restrained larvae (Figure 3D), bouts most often contained a maximum TBF around 30 Hz, even at fast grating speeds.”
Quote in the paperSubstantial claim - Findingown data
At distances greater than 60 μm from the initial pipette position next to nMLF somas, a response occurs in fewer than 5% of trials.
“We observed a response in <5% of trials at distances greater than 60 μm.”
Quote in the paperSubstantial claim - Findingown data
Head-restrained larvae with a free tail can reliably perform the optomotor response by moving the tail in response to drifting gratings.
“With a view to monitoring neural activity in a restrained or paralyzed larva we characterized the changes in kinematic variables in head-restrained larvae, in an arrangement where the head remained stationary in agarose but the tail was free to move and larvae were still able to reliably perform the OMR by moving their tail in response to drifting gratings.”
Quote in the paperSubstantial claim - Findingown data
For grating speeds below 10 mm/s, fewer than 10% of bouts are fast.
“Note that the fraction of fast bouts elicited was smaller than 10% for grating speeds under 10 mm/s (Figure 2D).”
Quote in the paperNot a substantial claim - Findingown data
Electrical pulses delivered to the nMLF evoke distinct locomotor patterns.
“When electrical pulses of a given intensity and frequency were delivered to the nMLF (Experimental Procedures), larvae responded with distinct locomotor patterns (Figure 5A).”
Quote in the paperSubstantial claim - Findingown data
With slow stimuli, bouts form one cluster in a space defined by head yaw, mean tail-beat frequency, rostral bend amplitude and maximum tail-beat frequency.
“For slow stimuli trials, the bouts formed a single cluster in a space defined by head yaw, mean TBF, rostral bend amplitude and maximum TBF (Figure 2A, Figure S1).”
Quote in the paperSubstantial claim - Findingown data
Stimulation frequency changes the amplitude of the calcium signal in large nMLF neurons.
“We confirmed this by measuring the maximum Δf/f of the calcium response to the varying stimulation parameters, and concluded that the frequency of stimulation modified the amplitude of the calcium signal in large nMLF neurons (Figure 5E).”
Quote in the paperSubstantial claim - Findingown data
The delay from grating onset to motor response drops significantly as grating speed increases.
“We saw a significant decline in latency as the speed of the grating increased, indicating that a faster grating elicited a locomotor response more quickly.”
Quote in the paperNot a substantial claim - Findingown data
Average swim speed rises as grating speed increases.
“We first confirmed that larvae increase their average swim speed as grating speed increases (Figure 1C-D).”
Quote in the paperSubstantial claim - Findingown data
Across all larvae, 82% (31 of 38) of MeLr cells had activity significantly correlated with bout duration.
“82% (31/38) of MeLr cells had activity which correlated significantly with bout duration (Figure 7H)”
Quote in the paperSubstantial claim - Findingown data
MeM cells had a significant activity decrease at the fastest grating speed.
“MeM cells showed a significant decrease in activity for the fastest moving grating speed”
Quote in the paperNot a substantial claim - Findingown data
Larvae rarely performed behavioral maneuvers other than forward swim bouts.
“Rarely, larvae performed other behavioral maneuvers (Figure S6C).”
Quote in the paperNot a substantial claim - Findingown data
Calcium signals remain present in paralyzed larvae when motor output is recorded from ventral roots.
“calcium signals persist when the larva is paralyzed and motor output is recorded by ventral roots (Figure S7).”
Quote in the paperNot a substantial claim - Findingown data
At visual motion speeds below 10 mm/s, larvae mostly use slow bouts.
“For visual motion slower than 10 mm/s, larvae swim using mostly slow bouts.”
Quote in the paperSubstantial claim - Findingown data
Imaging of RGC-labeled larvae showed no direct overlap with the RS population.
“we saw no regions of direct overlap with the RS population (Figure S8).”
Quote in the paperSubstantial claim - Findingown data
MeM cells differed markedly from the other three large nMLF cell types, the MeL cells.
“a marked difference between the MeM cells and the other three types of large nMLF cells, the MeL cells.”
Quote in the paperNot a substantial claim - Findingown data
Motor-triggered calcium responses in large nMLF cells were similar across grating speeds.
“The motor-triggered responses were similar across speeds.”
Quote in the paperSubstantial claim - Findingown data
In the restrained imaging experiments, larvae produced most swim events during the two slower grating speeds.
“larvae performed the majority of swim events while presented with the two slower moving gratings (Figure 7C).”
Quote in the paperNot a substantial claim - Findingown data
Larvae usually performed a forward swim bout when shown a forward-moving grating.
“When shown a forward moving grating, larvae typically performed a forward swim bout such as in Figure 7D.”
Quote in the paperNot a substantial claim - Findingown data
Bouts and interbouts are an important means by which larvae modulate swimming speed.
“The implementation of bouts and interbouts is shown here to be an important way larvae modulate swimming speed”
Quote in the paperSubstantial claim - Findingown data
The nMLF is active during swim bouts.
“the nMLF is active when larvae perform swim bouts.”
Quote in the paperSubstantial claim - Findingown data
Large nMLF cells were active in every presentation across the tested grating speeds.
“large cells were active 100% of the time.”
Quote in the paperSubstantial claim - Findingown data
In a representative larva, MeLr and MeLc activity correlated significantly with bout duration.
“Activity in MeLr and MeLc correlated significantly with bout duration”
Quote in the paperSubstantial claim - Findingown data
MeM cells had a peak-signal latency that was two seconds longer than the other large nMLF cells at all tested speeds.
“the latency to peak signal was two seconds longer across all speeds.”
Quote in the paperNot a substantial claim - Findingown data
nMLF cells were active only in stimulus presentations that contained swim bouts.
“nMLF cells were only active in presentations during which bouts occurred.”
Quote in the paperSubstantial claim - Findingown data
nMLF activity, especially in MeLr and MeLc, correlates with specific swim kinematics: bout duration and maximum TBF.
“activity of the nMLF, and in particular two identifiable cells: MeLr and MeLc, is correlated with specific kinematic aspects of swimming: the bout duration and the maximum TBF.”
Quote in the paperSubstantial claim - Findingown data
The largest activity modulation occurred in the large nMLF cells.
“We found the largest modulation of activity in the large cells”
Quote in the paperSubstantial claim - Findingreasoning
Larvae can track whole-field visual motion well up to 20 mm/s.
“Larvae can track whole-field visual motion well up to 20mm/s”
Quote in the paperNot a substantial claim - Findingown data
In an example larva, both MeLr and MeLc activity correlated significantly with maximum TBF.
“where both MeLr and MeLc show a significant correlation”
Quote in the paperNot a substantial claim - Findingown data
Across all larvae, 89% (16 of 18) of MeLc cells had activity significantly correlated with maximum TBF.
“89% (16/18) of MeLc cells showed a significant correlation with maximum TBF (Figure 7I).”
Quote in the paperSubstantial claim - Findingown data
Activity of single identified nMLF neurons correlates with locomotor kinematics.
“We found that the activity of single identified neurons within the nMLF is correlated with locomotor kinematics”
Quote in the paperSubstantial claim - Findingown data
Different locomotion speeds are produced not only by changing oscillation speed but also by a dynamic interplay among gait, duration, intensity and rate of movement episodes.
“We show that different speeds of locomotion are accomplished not only by changing the speed of these oscillations, but through a dynamic interplay between the locomotor gait, and the duration, intensity and rate of movement episodes.”
Quote in the paperSubstantial claim - Findingown data
In a representative larva, MeLm and MeM activity did not correlate significantly with bout duration.
“whereas that of MeLm and MeM did not (Figure S6D).”
Quote in the paperNot a substantial claim - Findingown data
When visual motion speed exceeds 10 mm/s, larvae begin to recruit fast bouts.
“When the speed of the visual motion exceeds 10 mm/s, larvae begin recruiting fast bouts.”
Quote in the paperSubstantial claim - Findingown data
Faster bouts during whole-field motion are associated with increased nMLF activity.
“Our observation that faster bouts elicited during the presentation of whole-field motion are associated with increased activity in the nMLF”
Quote in the paperSubstantial claim - Interpretationown data
The stimulation parameters that change bout duration and tail-beat frequency also change nMLF activity.
“These data indicated that electrical stimulation of the nMLF was sufficient to evoke swimming, and that the stimulation parameters which modified bout duration and TBF also modified activity in the nMLF.”
Quote in the paperSubstantial claim - Interpretationown data
Electrical stimulation of the nMLF is sufficient to evoke swimming.
“These data indicated that electrical stimulation of the nMLF was sufficient to evoke swimming, and that the stimulation parameters which modified bout duration and TBF also modified activity in the nMLF.”
Quote in the paperSubstantial claim - Interpretationown data
The stimulated neurons are activated more strongly under higher-frequency conditions.
“This suggests that the stimulated neurons were activated more strongly under these higher frequency conditions.”
Quote in the paperSubstantial claim - Interpretationown data
The cyclic nature, tail-beat frequency and maximum tail bend position indicate these movements are not struggle or escape responses.
“The cyclic nature, TBF and maximum bend position along the tail indicate these movements were not struggle or escape responses.”
Quote in the paperSubstantial claim - Interpretationreasoning
Connections from RGCs to the RS population are indirect and pass through non-tectal retino-recipient areas such as the pretectum.
“This suggests connections are indirect and via non-tectal retino-recipient areas such as the pretectum”
Quote in the paperSubstantial claim - Interpretationown data
Two-photon calcium imaging in behaving, minimally invasive, awake preparations provides evidence that identified neurons selectively modulate locomotion.
“With in vivo two-photon calcium imaging in an awake, behaving, minimally invasive preparation, we present evidence for selective locomotor modulation by identified neurons.”
Quote in the paperSubstantial claim - Interpretationown data
nMLF activity is related to motor output.
“We concluded that activity in the nMLF was motor related”
Quote in the paperSubstantial claim - Interpretationown data
nMLF stimulation and ablation experiments indicate that the nMLF participates in producing the motor output needed for different swimming speeds.
“Stimulation and ablation of the nMLF suggested its participation in dynamically executing motor output required to achieve various speeds of swimming.”
Quote in the paperSubstantial claim - Premisenone given
Direct connections between these neuromodulatory terminals and nMLF neurons have not been established.
“but direct connections with nMLF neurons are not established.”
Quote in the paperNot a substantial claim - Interpretationown data
If the nMLF contributes to speed-dependent behavioral changes, it does so by changing the activity of already active cells rather than by recruiting previously inactive cells.
“This suggested that if the nMLF was involved in behavioral modifications with increasing speed, as was indicated by the previous results, this occurred as a result of the change in activity of already active cells rather than the recruitment of previously inactive cells.”
Quote in the paperSubstantial claim - Interpretationown data
Increasing grating speed did not recruit additional nMLF cells into the active pool.
“We concluded from these results that no recruitment of nMLF cells was occurring as the grating speed increased.”
Quote in the paperSubstantial claim - Interpretationcitation
The slow bouts observed here have kinematic parameters resembling the slow swim maneuver.
“The kinematic parameters of these bouts are similar to the “slow swim maneuver” (Budick and O'Malley, 2000)”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites Budick and O'Malley, 2000
Couldn’t be matched to a paper in Crossref, so it can’t be checked.
- Interpretationreasoning
20 mm/s is likely the upper limit of visual motion that larvae naturally encounter.
“which suggests this is the upper limit of what they naturally encounter.”
Quote in the paperNot a substantial claim - Study design and conductown data
Calcium responses agree with targeted cell-attached electrophysiological recordings from large nMLF neurons.
“These calcium responses were consistent with targeted cell-attached electrophysiological recordings from large nMLF neurons (Figure S5).”
Quote in the paperNot a substantial claim - Interpretationcitation
This correlation suggests that a continuously varying set of interneuron types is used as locomotor speed changes smoothly.
“suggesting a utilization of a continuously varying set of interneuron cell types through smoothly graded shifts in locomotor speed.”
Quote in the paperSubstantial claim - Interpretationown data
MeLr cells play a role in controlling bout duration.
“suggesting a role of this cell type in the control of this behavioral variable.”
Quote in the paperSubstantial claim - Premisecitation
Burst swimming is a distinct gait mainly linked to escape behavior.
“a distinct gait primarily associated with the escape response (Budick and O'Malley, 2000).”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites Budick and O'Malley, 2000
Couldn’t be matched to a paper in Crossref, so it can’t be checked.
- Interpretationreasoning
Changing bout frequency, duration, and intensity can modulate the baseline motor pattern without altering the gait's main components.
“Eliciting bouts more frequently and increasing their duration and intensity would permit modulation of this baseline motor pattern without changing the main components of the gait, consistent with our observations.”
Quote in the paperSubstantial claim - Interpretationown data
nMLF neuron activity modulates both the duration and oscillation frequency of tail movements.
“and modulates both the duration and oscillation frequency of tail movements.”
Quote in the paperSubstantial claim - Interpretationcitation
Responses to fast-moving gratings have kinematic values resembling burst swimming.
“The responses to fast moving gratings have values which resemble the kinematic features that describe “burst swimming””
Quote in the paperSubstantial claim0 of 1 sources checked- cites Budick and O'Malley, 2000
Couldn’t be matched to a paper in Crossref, so it can’t be checked.
- Interpretationown data
The greater sensory-triggered nMLF activity at 5 and 10 mm/s is entirely explained by those speeds producing more bouts.
“the larger sensory-triggered activity at 5 and 10 mm/s grating speed is solely a result of the fact that these speeds elicit more bouts (Figure 7C).”
Quote in the paperSubstantial claim - Interpretationcitation
The anatomy is consistent with nMLF neurons tonically activating rostral spinal segments, which then propagate excitation caudally to produce forward motion.
“This is consistent with the idea of nMLF neurons providing a tonic signal to activate rostral spinal segments which then propagate a wave of excitation caudally to generate forward motion”
Quote in the paperSubstantial claim - Premisecitation
Anatomical studies show that nMLF cell collaterals become less dense with increasing distance along the tail.
“Studies of anatomical links between nMLF cells and the spinal cord have shown a decrease in the density of collaterals with increasing distance along the tail (Gahtan and O'Malley, 2003).”
Quote in the paperSubstantial claim0 of 1 sources checked- cites Gahtan and O'Malley, 2003 source
- Interpretationown data
This study assigns the nMLF a major role in controlling locomotion speed.
“In this study we attribute to the nMLF a major role in the control of the speed of locomotion.”
Quote in the paperSubstantial claim - Interpretationown data
This study is the first to evoke this broad range of swimming speeds in an intact, non-paralyzed preparation.
“The behavioral observations we present here are the first case where this broad range of swimming speeds has been experimentally evoked in an intact, non-paralyzed preparation”
Quote in the paperSubstantial claim - Interpretationreasoning
The experimental paradigm offers an additional tool for studying spinal CPG mechanisms.
“this experimental paradigm provides an additional tool to study these CPG mechanisms.”
Quote in the paperNot a substantial claim - Study design and conductown data
Two-photon laser ablation damage was well localized to the target region.
“Damage was well localized to the target region (Figure S3).”
Quote in the paperSubstantial claim
- May combine two claims. 42
- Classified as probably not a substantial claim. 33
May combine two claims.
PremisecitationThe nMLF is a midbrain cluster of reticulospinal cells whose dendrites reach retino-recipient areas and whose axons project to the spinal cord.
“a cluster of RS cells in the midbrain which extends dendrites toward retino-recipient areas, and projects its axons to the spinal cord ((Gahtan et al., 2005; Kimmel et al., 1982) Wang and McLean, co-submission).”
Quote in the paperSubstantial claim1 of 2 sources checkedProbably not a substantial claim: may not pass S3 (load-bearing).
PremisecitationActivity in this optically accessible reticulospinal population has been associated with locomotion evoked by various sensory stimuli.
“The activity of this optically accessible population has been linked with locomotion in response to a variety of sensory stimuli (Huang et al., 2013; Kimura et al., 2013; Koyama et al., 2011).”
Quote in the paperNot a substantial claim2 of 3 sources checked- cites Huang et al., 2013 source
- cites Kimura et al., 2013 source
The Results report that hindbrain reticulospinal V2a neurons were active during swimming, and that optogenetic activation evoked swimming. But the recorded activity was during spontaneous swimming; the paper does not establish activity during locomotion evoked by a variety of sensory stimuli. The light used for optogenetic activation was not presented as a sensory stimulus. (LLM, conf=0.86)
Experimental — accuracy not yet measured - cites Koyama et al., 2011 source
Classified as probably not a substantial claim.
PremisecitationIn the optomotor response, larvae swim and turn in response to whole-field visual motion to keep a stable position relative to their visual surroundings.
“One of these innate sensory-driven locomotor behaviors is the optomotor response (OMR) (Bilotta, 2000; Neuhauss et al., 1999) in which larvae respond to whole-field visual motion (Maaswinkel and Li, 2003; Orger et al., 2000) by swimming and turning to maintain a stable position with respect to their visual environment (Portugues and Engert, 2009).”
Quote in the paperSubstantial claim1 of 1 sources checked- cites Portugues and Engert, 2009 source
Probably not a substantial claim: may not pass S3 (load-bearing).
PremisecitationMany morphological classes and genetic identities of spinal interneurons have been identified across vertebrate model organisms.
“Many morphological classes of these interneurons and their genetic identities have been identified across vertebrate model organisms (Goulding, 2009; Hale et al., 2001; Roberts et al., 2010)”
Quote in the paperNot a substantial claim1 of 3 sources checkedProbably not a substantial claim: may not pass S3 (load-bearing).
PremisecitationIn lamprey, olfactory input reaches RS cells via the olfactory epithelium, posterior tuberculum, and MLR.
“Olfactory inputs to motor control centers have been established in the lamprey from the olfactory epithelium to the RS cells, passing through the posterior tuberculum and the MLR (Figure 8) (Derjean D, 2010).”
Quote in the paperNot a substantial claim1 of 1 sources checked- cites Derjean D, 2010 source
Classified as probably not a substantial claim.
PremisecitationThe larval zebrafish OMR consists of orientation and locomotor responses to whole-field visual motion.
“The OMR in larval zebrafish is comprised of orientation and locomotor movements in response to whole-field visual motion patterns”
Quote in the paperSubstantial claim1 of 3 sources checkedClassified as probably not a substantial claim.
PremisecitationThe pretectum has been identified as involved in whole-field motion processing in zebrafish.
“recently identified as involved in processing whole-field motion in zebrafish (Kubo et al., 2014; Portugues et al., 2014).”
Quote in the paperSubstantial claim1 of 2 sources checkedProbably not a substantial claim: may not pass S3 (load-bearing).
PremisecitationFunctional studies have shown distinct activity patterns among identified interneuron types and their roles in rhythmic locomotor generation.
“functional studies have revealed distinct patterns of activity across these identified interneuron types and their role in the generation of rhythmic locomotor patterns (Crone et al., 2009; Gosgnach et al., 2006; Wyart et al., 2009).”
Quote in the paperNot a substantial claim1 of 3 sources checked- cites Crone et al., 2009 source
- cites Gosgnach et al., 2006 source
- cites Wyart et al., 2009 source
The Abstract reports that activating KA cells induced rhythmic swimming, while silencing them reduced spontaneous swimming; the discussion says KA cells can drive the spinal CPG. The paper therefore supports a role for an identified cell type in locomotion, but it does not itself establish distinct activity patterns across multiple identified interneuron types. The discussion describes activity correlations from prior studies rather than presenting them as this study's finding. Page numbers are unavailable in our copy. (LLM, conf=0.84)
Experimental — accuracy not yet measured
Probably not a substantial claim: may not pass S3 (load-bearing). May combine two claims.
PremisecitationIn Xenopus, descending GABAergic stopping neurons or adenosine build-up may help terminate bouts.
“In Xenopus, dedicated descending GABAergic “stopping” neurons (Li et al., 2003) or build-up of adenosine (Dale, 2002) may contribute to bout termination.”
Quote in the paperNot a substantial claim1 of 2 sources checked- cites Li et al., 2003
Couldn’t be matched to a paper in Crossref, so it can’t be checked.
- cites Dale, 2002 source
Probably not a substantial claim: may not pass S3 (load-bearing). May combine two claims.
PremisecitationNeuromodulators are thought to be present around the nMLF, including TH- and 5-HT-positive terminals and dopaminergic and noradrenergic tracts.
“There are other neuromodulators thought to be present in the area immediately surrounding the nMLF, with identified terminals positive for TH and 5-HT (McLean and Fetcho, 2004), and dopaminergic and noradrenergic tracts targeting the area (Tay et al., 2011)”
Quote in the paperNot a substantial claim1 of 2 sources checked- cites McLean and Fetcho, 2004 source
- cites Tay et al., 2011 source
The Results sections on Otp-dependent DA neurons and hindbrain NA neurons describe dopaminergic projections to the hindbrain and spinal cord and widespread noradrenergic projections. They do not identify either type of tract as targeting the area immediately surrounding the nMLF. The TH- and 5-HT-positive terminals are attributed to a different citation in the citing sentence, so they are not part of this verdict. (LLM, conf=0.78)
Experimental — accuracy not yet measured
May combine two claims.
Findingown dataAbove 10 mm/s, average tail-beat frequency rises, and it is modulated only for bouts elicited by gratings faster than 10 mm/s.
“whereas the increase beyond 10 mm/s is accompanied by a rise in the average tail-beat frequency (TBF) which was only modulated for bouts elicited by a grating moving faster than 10 mm/s (Figure 1G).”
Quote in the paperSubstantial claimProbably not a substantial claim: may not pass S3 (load-bearing). May combine two claims.
Findingown dataThe nMLF is a midbrain nucleus with about 20 neurons on each side.
“The nMLF is a nucleus located in the midbrain consisting of ~20 neurons on each side (Figure 4A, Movie S2).”
Quote in the paperNot a substantial claimMay combine two claims.
Findingown dataFrom 0 to 10 mm/s, slow bouts become longer and faster, cover more distance, and the interbout interval shortens.
“As the grating speed increased from 0 to 10 mm/s, the duration of these bouts increased as did their speed, resulting in bouts that spanned a greater distance, and the interbout interval was reduced.”
Quote in the paperSubstantial claimProbably not a substantial claim: may not pass S3 (load-bearing).
Findingown dataThe kinematic values from stimulation fall in a similar range to those from freely swimming and restrained larvae responding to drifting gratings.
“It is worth noting that the kinematic values for the data in Figure 5 have a similar range to the data in freely swimming and restrained larvae swimming in response to drifting gratings (Figures 1,3).”
Quote in the paperNot a substantial claimMay combine two claims.
Findingown dataIn the head-restrained open-loop setup, faster gratings increase bout duration and reduce interbout duration and swimming initiation latency, as in freely swimming larvae.
“Larvae viewing drifting gratings in this open-loop setup increased the duration of bouts (Figure 3A) and decreased both the interbout duration (Figure 3B) and the latency to initiate swimming (Figure 3C) with increasing grating speed, consistent with the behavior of freely swimming larvae.”
Quote in the paperSubstantial claimMay combine two claims.
Findingown dataAt fast speeds, freely swimming larvae often produce bouts with maximum tail-beat frequencies above 65 Hz, which restrained larvae rarely do.
“At fast speeds, freely swimming larvae executed bouts that contain maximum TBFs often exceeding 65 Hz, which was rarely observed in restrained larvae.”
Quote in the paperSubstantial claimMay combine two claims.
Findingown dataFrom 10 to 40 mm/s, fast bouts are recruited more often, and their tail-beat frequency and speed rise with grating speed.
“As the stimulus speed increased from 10 to 40 mm/s, these fast bouts were recruited more frequently. Their TBF and speed increased with grating speed resulting in more vigorous bouts.”
Quote in the paperSubstantial claimMay combine two claims.
Findingown dataRaising pulse frequency, but not current, increases bout duration and maximum tail-beat frequency.
“Increasing the current had no significant effect (data not shown) but increasing the pulse frequency resulted in an increase in bout duration (Figure 5C) and an increase in maximum TBF (Figure 5D).”
Quote in the paperSubstantial claimMay combine two claims.
Findingown dataBoth bout types show progressive changes in speed and distance with grating speed, but slow bouts stop increasing at a bout speed slightly below 20 mm/s and a distance of about 4 mm.
“Both bout types showed a progressive modulation of speed and distance (Figure 2E, G) in response to different grating speeds, although slow bouts plateaued at just under 20 mm/s bout speed and 4 mm bout distance.”
Quote in the paperSubstantial claimMay combine two claims.
Findingown dataSmall nMLF cell responses look similar across speeds, and their latency decreases slightly less as grating speed rises.
“small cell responses appeared to be similar across speeds and their latency was found to decrease slightly less as grating speed increases (Figure 6E).”
Quote in the paperNot a substantial claimMay combine two claims.
Findingown dataAt 10 mm/s, slow-bout rate and performance reach a ceiling and larvae start recruiting fast bouts.
“When grating speeds reached 10 mm/s, the rate and performance of slow bouts saturated and larvae began recruiting fast bouts.”
Quote in the paperSubstantial claimMay combine two claims.
Findingown dataFaster gratings make larvae produce bouts more often; interbout duration falls from 1 s with a stationary grating to 200 ms when the grating moves faster than 10 mm/s.
“A faster grating led larvae not only to modulate their swim bouts, but to elicit them more often: an interbout duration of 1 s for a stationary grating became 200 ms by the time the grating moved faster than 10 mm/s (Figure 1H).”
Quote in the paperSubstantial claimMay combine two claims.
Findingown dataLarvae track grating speeds as high as 20 mm/s, yet their swimming speed stops increasing for faster gratings.
“Over the course of a trial lasting several seconds (Figure 1C), they were able to match grating speeds up to 20 mm/s but their speed plateaus for gratings moving at faster velocities (Figure 1D).”
Quote in the paperSubstantial claimMay combine two claims.
Findingown dataThe maximum tail-beat frequency distribution in restrained larvae matches freely swimming larvae at slow speeds but differs significantly at fast grating speeds.
“The shape of these distributions matches that observed in freely swimming larvae (Figure 3D) for slow speeds but differs significantly at fast grating speeds.”
Quote in the paperSubstantial claimMay combine two claims.
Findingown dataMean and maximum tail-beat frequency stay relatively constant for slow bouts but change strongly with grating speed for fast bouts; bout duration shows the reverse pattern.
“Mean and maximum TBF (Figure 2H, I) were relatively constant for slow bouts, but were strongly modulated with grating speed for fast bouts, while the opposite was true of bout duration (Fig. 2F).”
Quote in the paperSubstantial claimMay combine two claims.
Findingown dataIn all ten larvae, failure to evoke a behavioral response always coincided with failure to evoke a calcium response, and activation was either bilateral across the whole nucleus or absent.
“In all larvae (n = 10) we observed that a failure to elicit a behavioral response always correlated with failure to elicit a calcium response, and we always saw either bilateral activation of the entire nucleus across both sides of the midline or no activity at all.”
Quote in the paperSubstantial claimMay combine two claims.
Findingown dataAs grating speed rises, the original cluster shifts progressively and a second cluster appears, so fast-grating trials show two distinct distributions with little overlap.
“As the grating speed increased the original cluster shifts progressively in this space indicating a modulation of the slow swim bout, and in addition a second cluster emerged such that for fast-moving grating trials two distinct distributions with minimal overlap were observed (Figure 2B).”
Quote in the paperSubstantial claimProbably not a substantial claim: may not pass S3 (load-bearing).
Findingown dataMeM responses were generally smaller than MeL responses.
“the responses measured in MeMs were generally smaller than those measured in the MeLs.”
Quote in the paperNot a substantial claimMay combine two claims.
Findingown dataOnly a subset of small nMLF cells responded, and that responding fraction stayed near 80% across grating speeds.
“only a fraction of small cells responded but this fraction remained constant at around 80% across grating speeds.”
Quote in the paperSubstantial claimMay combine two claims.
Findingown dataNo lateralized differences in nMLF calcium responses were found, so left and right examples were pooled.
“We observed no lateralized differences in responses so examples from the left and right sides of the midline were pooled.”
Quote in the paperNot a substantial claimProbably not a substantial claim: may not pass S3 (load-bearing).
Findingown dataBoth axial and pectoral fin motifs were observed in the electrical stimulation preparation when fins were unrestrained.
“We observe both these motifs in the electrical stimulation preparation when the fins are unrestrained (data not shown).”
Quote in the paperNot a substantial claimMay combine two claims.
Findingown dataActivity in identified nMLF neurons correlates with the visual stimulus and with behavioral elements that mark changing locomotor speed.
“We observe correlations between activity in identified nMLF neurons and both the visual stimulus and the specific behavioral elements we identify as signatures of changing locomotor speed.”
Quote in the paperSubstantial claimMay combine two claims.
Findingown dataMeLr activity correlated with bout duration, and MeLc activity correlated with maximum TBF.
“The activity in MeLr and MeLc correlated well with bout duration and maximum TBF respectively”
Quote in the paperSubstantial claimProbably not a substantial claim: may not pass S3 (load-bearing). May combine two claims.
PremisecitationThe nMLF is multimodal, responds to many stimuli and during spontaneous swimming, and is thought to be involved in a wide range of locomotion intensities.
“This structure is known to be multi-modal and is active in response to a variety of stimuli as well as during spontaneous swimming, and is further believed to be implicated in a broad range of intensities of locomotion (Sankrithi and O'Malley, 2010).”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites Sankrithi and O'Malley, 2010 source
Probably not a substantial claim: may not pass S3 (load-bearing).
PremisecitationSubcortical pathways that initiate and control locomotion through the basal ganglia are conserved anatomically and functionally across vertebrates.
“Critical subcortical pathways for the initiation and control of locomotion via the basal ganglia are conserved throughout the vertebrate lineage both anatomically and functionally (Grillner et al., 2013).”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites Grillner et al., 2013 source
Classified as probably not a substantial claim. May combine two claims.
PremisecitationThe larval zebrafish reticulospinal population contains about 300 neurons, many of which can be identified individually.
“In the larval zebrafish, the RS population consists of around 300 neurons, many of which are individually identifiable (Kimmel et al., 1982).”
Quote in the paperSubstantial claim0 of 1 sources checked- cites Kimmel et al., 1982 source
May combine two claims.
Interpretationown dataThe nMLF ablation deficit affects all recorded parameters-bout duration, maximum tail-beat frequency, bout distance and bout speed-indicating a general problem in modulating swimming speed across many grating speeds, while controls show no deficit.
“This finding applied to all of the parameters we recorded, including bout duration, maximum TBF, bout distance and bout speed, indicating a general deficit in modulation of swimming speed in response to a large range of grating speeds as compared to controls which showed no deficit.”
Quote in the paperSubstantial claimMay combine two claims.
Interpretationown dataIn the restrained preparation, larvae perform the optomotor response robustly across grating speeds but mainly by modulating slow bouts.
“These frequencies are those associated with fast bouts, from which we conclude that in the restrained preparation larvae robustly perform the OMR to gratings moving at different speeds, but do so mainly by modulation of slow bouts.”
Quote in the paperSubstantial claimMay combine two claims.
Interpretationown dataSlow bouts use varying numbers of oscillations at a fixed tail-beat frequency, making them longer, while fast bouts use varying tail-beat frequencies over a fixed duration.
“In summary, during slow bouts larvae performed different numbers of oscillatory cycles at the same TBF resulting in longer bouts, whereas for fast bouts larvae swam with different TBFs over a fixed duration.”
Quote in the paperSubstantial claimMay combine two claims.
PremisecitationEight nMLF neurons are larger than the rest, with one each of MeLr, MeLc, MeLm and MeM in each half of the brain.
“Eight of the nMLF neurons are larger in size than the others, MeLr, MeLc, MeLm and MeM, with one of each type in each half of the brain (Kimmel et al., 1982).”
Quote in the paperSubstantial claim0 of 1 sources checked- cites Kimmel et al., 1982 source
May combine two claims.
PremisecitationReticulospinal neurons excite spinal central pattern generators by activating NMDA receptors that are essential for initiating rhythmic locomotion.
“RS neurons excite spinal CPGs (Buchanan and Grillner, 1987; Deliagina et al., 2002; Jordan, 1998) by activating NMDA receptors essential to initiate rhythmic locomotion (Hagglund et al., 2010; McDearmid and Drapeau, 2006; Roberts et al., 2008).”
Quote in the paperNot a substantial claim0 of 3 sources checkedMay combine two claims.
Interpretationown dataAt slower speeds, bout duration, interbout duration and latency contribute; at faster speeds, tail-beat frequency is the main contributor.
“Changes in bout duration, interbout duration and latency appear to contribute at slower speeds, while changes in TBF are the major contributor at faster speeds.”
Quote in the paperSubstantial claimProbably not a substantial claim: may not pass S3 (load-bearing). May combine two claims.
PremisecitationElectrical stimulation of the mesencephalic locomotor region can start locomotion and works across walking, flying and swimming.
“One such motor structure is the mesencephalic locomotor region (MLR), an area where electrical stimulation can initiate locomotion, as first demonstrated in cats nearly 50 years ago, and which functions across locomotor modalities, including walking, flying, and swimming (Cabelguen JM, 2003; Kashin SM, 1974; Shik ML, 1966; Steeves, 1986).”
Quote in the paperNot a substantial claim0 of 3 sources checkedMay combine two claims.
PremisecitationThe MLR has not been identified in zebrafish, and larval immunostaining has not revealed midbrain cholinergic cell clusters.
“The MLR has yet to be identified in the zebrafish, with no unidentified midbrain clusters of cholinergic cells observed in larval immunostaining (Arenzana et al., 2005).”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites Arenzana et al., 2005 source
May combine two claims.
Interpretationown dataAll four large nMLF cell types have activity related to motor output, but they do so in different ways.
“activity in all four types of large nMLF cell was related to motor output but differently so.”
Quote in the paperSubstantial claim- Rests on an assumption: The large nMLF cell classes MeLr, MeLc, MeLm, and MeM are stable functional categories that can be compared across larvae.
Probably not a substantial claim: may not pass S3 (load-bearing).
InterpretationreasoningThe RS array could act as an integration center for sensory cues that guide navigation.
“With these various sensory modalities providing inputs, the RS array could serve as an integration center for sensory cues directing navigation of the environment.”
Quote in the paperNot a substantial claimMay combine two claims.
InterpretationreasoningLarvae with impaired nMLF function may poorly regulate bout duration and TBF, which could reduce their hunting ability.
“We suggest based on our findings that larvae lacking proper nMLF function may be unable to regulate bout duration and TBF well, reducing their capability to hunt.”
Quote in the paperSubstantial claimProbably not a substantial claim: may not pass S3 (load-bearing).
PremisecitationThe slow swim maneuver is a locomotor gait that combines axial movement with alternating pectoral fin movement.
“which constitutes a locomotor gait based on axial movement in conjunction with an alternating pectoral fin pattern (Green et al., 2011).”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites Green et al., 2011 source
Probably not a substantial claim: may not pass S3 (load-bearing).
PremisecitationThe dorsal-ventral position of these excitatory interneurons correlates with the lowest swimming frequency at which they are active.
“The dorsal-ventral position of these excitatory interneurons is correlated with the minimal swimming frequency at which the neuron is active (McLean et al., 2007)”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites McLean et al., 2007 source
Probably not a substantial claim: may not pass S3 (load-bearing).
PremisecitationA principle of spinal circuit organization is that different outputs can arise from a shared neuron pool via selective recruitment of multifunctional and specialized interneuron classes.
“A new principle in spinal circuit organization has emerged in which different outputs arise from a shared pool of available neurons, through the selective recruitment of sets of multifunctional and specialized interneuron classes (Berkowitz et al., 2010).”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites Berkowitz et al., 2010
Couldn’t be matched to a paper in Crossref, so it can’t be checked.
May combine two claims.
PremisecitationThe tangential nucleus relays utricular otolith information to oculomotor nuclei for vestibular eye-position correction and sends axonal arbors to the contralateral nMLF.
“The tangential nucleus contributes to vestibular-correction of eye position by relaying information sensed by utricular otoliths in the ear to oculomotor nuclei, with axonal arbors targeting the contralateral nMLF (Bianco et al., 2012) (Figure 8).”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites Bianco et al., 2012 source
Probably not a substantial claim: may not pass S3 (load-bearing).
InterpretationcitationThe tangential nucleus could provide a direct route for vestibular information to reach locomotor control centers.
“This could provide a direct pathway for vestibular information to reach locomotor control centers.”
Quote in the paperNot a substantial claimProbably not a substantial claim: may not pass S3 (load-bearing).
PremisecitationIn mammalian spinal cord, non-NMDA and NMDA receptor systems can act in parallel and independently to contribute to locomotor speed and stability.
“Work in the mammalian spinal cord revealed some of the complexity of glutamatergic inputs, showing that non-NMDA and NMDA receptor systems can function in parallel and independently to contribute to locomotor speed and stability (Talpalar and Kiehn, 2010).”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites Talpalar and Kiehn, 2010
Couldn’t be matched to a paper in Crossref, so it can’t be checked.
Probably not a substantial claim: may not pass S3 (load-bearing).
PremisecitationThe cholinergic MLR connection is thought to drive bilateral RS cells symmetrically and monosynaptically from one side.
“This connection from the cholinergic MLR is thought to drive bilateral RS cells symmetrically and monosynaptically from the MLR on one side (Brocard et al., 2010).”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites Brocard et al., 2010 source
May combine two claims.
Interpretationown datanMLF activity during optomotor grating presentation is not sensory-driven but is time-locked to swim bouts.
“nMLF activity in response to optomotor gratings is not sensory related but is rather locked to the timing of swim bouts.”
Quote in the paperSubstantial claimMay combine two claims.
InterpretationreasoningThe nMLF could control both motor neuron recruitment and the involvement of different premotor elements to coordinate responses to visual input.
“Thus the nMLF could dictate not only motor neuron recruitment but also the participation of different premotor elements to coordinate appropriate responses to visual inputs.”
Quote in the paperSubstantial claimProbably not a substantial claim: may not pass S3 (load-bearing). May combine two claims.
Study design and conductnone givenAnimal handling and experimental procedures received approval from the named ethics committees and followed European Directive 2010/63/EU.
“Animal handling and experimental procedures were approved by the Harvard University Standing Committee on the Use of Animals in Research and Training (Cambridge, MA, USA), by the Champalimaud Foundation Ethics Committee and by the Portuguese Direcção Geral de Veterinária and were according to the European Directive 2010/63/EU.”
Quote in the paperNot a substantial claimClassified as probably not a substantial claim.
Study design and conductown dataCell ablation was confirmed in 177 of 178 attempts.
“cell ablation was confirmed in 177/178 attempts.”
Quote in the paperSubstantial claimProbably not a substantial claim: may not pass S3 (load-bearing).
PremisecitationThe segregation of the motor neuron pool by swimming frequency persists into adult stages.
“this pattern of segregation of motor neuron pool by swimming frequency continues to adult stages (Ampatzis et al., 2013).”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites Ampatzis et al., 2013 source
Classified as probably not a substantial claim.
PremisecitationBroad nMLF outputs to the spinal motor pool can be converted into specific recruitment patterns by motor neuron intrinsic biophysical properties.
“They show broad outputs from the nMLF to the spinal motor pool can be transformed into specific patterns of recruitment based on the intrinsic biophysical properties of motor neurons (Figure 8).”
Quote in the paperSubstantial claim0 of 1 sources checked- cites Wang and McLean (co-submission)
Couldn’t be matched to a paper in Crossref, so it can’t be checked.
Probably not a substantial claim: may not pass S3 (load-bearing). May combine two claims.
PremisecitationSerotonin reduces the interbout period and increases motor output in active and fictive swimming.
“Serotonin has been shown to reduce the interbout period, resulting in increased motor output, in active and fictive swimming (Brustein et al., 2003).”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites Brustein et al., 2003 source
May combine two claims.
InterpretationreasoningIncreased nMLF activity would raise motor neuron activity and produce the stronger body bends seen in responses to fast gratings.
“would result in greater motor neuron activity, creating the more intense body bends we observe during responses to quickly moving gratings.”
Quote in the paperSubstantial claimMay combine two claims.
InterpretationreasoningMeLr and MeLc may both project to motor neurons, but MeLr may also activate bout-duration interneurons while MeLc may target TBF-regulating interneurons.
“Both MeLr and MeLc may project to motor neurons, but MeLr may also activate interneurons regulating bout duration, while MeLc may project to interneurons regulating TBF.”
Quote in the paperSubstantial claimProbably not a substantial claim: may not pass S3 (load-bearing).
Study design and conductown dataIn the head-embedded assay, each of the nine grating speeds was presented five times in random order.
“The grating speeds (3, 5, 8, 10, 15, 20, 25, 30 and 40 mm/s) were presented 5 times in random order.”
Quote in the paperNot a substantial claimProbably not a substantial claim: may not pass S3 (load-bearing).
PremisecitationWang and McLean mapped anatomical and synaptic connections between identified nMLF neurons and motor neuron targets.
“Wang and McLean (co-submission) make a leap forward, by mapping both anatomical and synaptic connections between identified nMLF neurons and motor neuron targets.”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites Wang and McLean (co-submission)
Couldn’t be matched to a paper in Crossref, so it can’t be checked.
Probably not a substantial claim: may not pass S3 (load-bearing).
PremisecitationZebrafish can increase swimming frequency through a specific motor neuron recruitment pattern, as shown by work combining network rhythmicity and motor neuron intrinsic properties.
“Work incorporating network rhythmicity and intrinsic properties of motor neurons showed how zebrafish can accomplish increases in swimming frequency using a specific pattern of motor neuron recruitment (Menelaou and McLean, 2012)”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites Menelaou and McLean, 2012 source
Probably not a substantial claim: may not pass S3 (load-bearing).
PremisecitationSpinal circuits needed for episode duration control have been localized to rostral segments.
“the spinal circuits necessary for episode duration control were recently localized to rostral segments (Wiggin, 2012).”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites Wiggin, 2012 source
The paper relies on this without support.
The large nMLF cell classes MeLr, MeLc, MeLm, and MeM are stable functional categories that can be compared across larvae.
“activity in all four types of large nMLF cell was related to motor output but differently so.”
The paper relies on this without support.
The head-restrained preparation preserves the normal relationship between nMLF activity and swimming kinematics.
“correlate neuronal activity with both sensory input (grating motion) and restrained active swimming with minimal motion artifacts”
Claims other papers make about this one
Each is checked against this paper’s own text: does it say what the citing paper says it does?
simZFish spontaneous bout frequency is 0.6 Hz, compared to zebrafish 0.67 Hz ± 0.09 Hz.
“To modulate the spontaneous bout frequency (simZFish: 0.6 Hz; zebrafish: 0.67 Hz +/− 0.09 Hz), the lPTs connect to symmetric neural nodes, representing the diencephalic nuclei of the medial longitudinal fasciculus (nMLF) known to control bout frequency (27), tail posture, and bout initialisation (41).”
From Artificial embodied circuits uncover neural architectures of vertebrate visuomotor behaviors (2025) · cites this paper as [27]
The Results section on whole-field visual motion reports that interbout duration changes with grating speed, but gives no spontaneous bout frequency of 0.67 ± 0.09 Hz. Searches for the stated frequency, its uncertainty, and spontaneous bout frequency found no passage establishing that value in our copy; the simZFish value is likewise not reported. (LLM, conf=0.75)
Experimental — accuracy not yet measured
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Self-citationModulation of locomotor activity in larval zebrafish during light adaptation
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A topographic map of recruitment in spinal cord
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BackgroundInfluentialPrey capture behavior evoked by simple visual stimuli in larval zebrafish
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Self-citationForward genetic analysis of visual behavior in zebrafish
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MethodSelf-citationInitiation of locomotion in mammals
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InfluentialSelf-citationContinuous shifts in the active set of spinal interneurons during changes in locomotor speed
McLean, D. L., Masino, M. A., Koh, I. Y. Y., Lindquist, W. B., & Fetcho, J. R. (2008) · Nature Neuroscience · doi:10.1038/nn.2225 · Cited by 270 · cited 3× · see citing works
“In zebrafish some excitatory classes of spinal interneurons are exclusively active during fast or slow swimming (McLean et al., 2008; Ritter et al., 2001).”
In mice lacking V2a interneurons, gait depends on speed of locomotion
Crone, S. A., Zhong, G., Harris-Warrick, R., & Sharma, K. (2009) · The Journal of Neuroscience · doi:10.1523/jneurosci.1206-09.2009 · Cited by 263 · cited 2× · see citing works
“, 2010), and functional studies have revealed distinct patterns of activity across these identified interneuron types and their role in the generation of rhythmic locomotor patterns (Crone et al., 2009; Gosgnach et al., 2006; Wyart et al., 2009).”
Masai, I., Lele, Z., Yamaguchi, M., Komori, A., Nakata, A., Nishiwaki, Y., Wada, H., Tanaka, H., Nojima, Y., Hammerschmidt, M., et al. (2003) · Development · doi:10.1242/dev.00465 · Cited by 256 · cited 1× · see citing works
“The OMR is known to persist in the absence of the optic tectum, the largest of these processing areas (Roeser and Baier, 2003), and when we imaged larvae expressing the fluorescent protein dendra under the control of a promoter that drives expression in RGCs (atoh7/ath5) (Kay et al., 2001; Masai et al., 2003) we saw n…”
Brain neurons which project to the spinal cord in young larvae of the zebrafish
Kimmel, C. B., Powell, S. L., & Metcalfe, W. K. (1982) · Journal of Comparative Neurology · doi:10.1002/cne.902050203 · Cited by 253 · cited 2× · see citing works
“The entire population is optically accessible, and their activity has been linked with locomotion in response to a variety of sensory stimuli (Huang et al., 2013; Kimura et al., 2013; Koyama et al., 2011).”
BackgroundHägglund, M., Borgius, L., Dougherty, K. J., & Kiehn, O. (2010) · Nature Neuroscience · doi:10.1038/nn.2482 · Cited by 252 · see citing works
Burrill, J. D., & Easter, S. S. (1994) · Journal of Comparative Neurology · doi:10.1002/cne.903460410 · Cited by 248 · see citing works
Optical control of zebrafish behavior with halorhodopsin
Arrenberg, A. B., Bene, F. D., & Baier, H. (2009) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0906252106 · Cited by 244 · cited 2× · see citing works
“The authors thank Filippo Del Bene for providing Ath5:Gal4;UAS:Dendra larvae (Arrenberg et al., 2009).”
Visuomotor behaviors in larval zebrafish after GFP-guided laser ablation of the optic tectum
Roeser, T., & Baier, H. (2003) · The Journal of Neuroscience · doi:10.1523/jneurosci.23-09-03726.2003 · Cited by 222 · cited 2× · see citing works
“The OMR is known to persist in the absence of the optic tectum, the largest of these processing areas (Roeser and Baier, 2003), and when we imaged larvae expressing the fluorescent protein dendra under the control of a promoter that drives expression in RGCs (atoh7/ath5) (Kay et al.”
Perception of Fourier and non-Fourier motion by larval zebrafish
Orger, M. B., Smear, M. C., Anstis, S., & Baier, H. (2000) · Nature Neuroscience · doi:10.1038/80649 · Cited by 211 · cited 4× · see citing works
“…is the optomotor response (OMR) (Bilotta, 2000; Neuhauss et al., 1999) in which larvae respond to whole-field visual motion (Maaswinkel and Li, 2003; Orger et al., 2000) by swimming and turning to maintain a stable position with respect to their visual environment (Portugues and Engert, 2009).”
InfluentialSelf-citationA confocal study of spinal interneurons in living larval zebrafish
Hale, M. E., Ritter, D. A., & Fetcho, J. R. (2001) · Journal of Comparative Neurology · doi:10.1002/cne.1266 · Cited by 203 · cited 2× · see citing works
“Many morphological classes of these interneurons and their genetic identities have been identified across vertebrate model organisms (Goulding, 2009; Hale et al., 2001; Roberts et al., 2010), and functional studies have revealed distinct patterns of activity across these identified interneuron…”
Kohashi, T., & Oda, Y. (2008) · Journal of Neuroscience · doi:10.1523/jneurosci.1435-08.2008 · Cited by 196 · cited 1× · see citing works
“These RS neurons are strategically located in the pathway, where visual, postural, and other sensory inputs important for selection of appropriate motor programs are thought to converge (Haehnel et al., 2012; Kohashi and Oda, 2008; Sato et al., 2007).”
BackgroundMapping a sensory-motor network onto a structural and functional ground plan in the hindbrain
Koyama, M., Kinkhabwala, A., Satou, C., Higashijima, S.-I., & Fetcho, J. (2011) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1012189108 · Cited by 190 · cited 1× · see citing works
“The activity of this optically accessible population has been linked with locomotion in response to a variety of sensory stimuli (Huang et al., 2013; Kimura et al., 2013; Koyama et al., 2011).”
Hindbrain V2a neurons in the excitation of spinal locomotor circuits during zebrafish swimming
Kimura, Y., Satou, C., Fujioka, S., Shoji, W., Umeda, K., Ishizuka, T., Yawo, H., & Higashijima, S.-I. (2013) · Current Biology · doi:10.1016/j.cub.2013.03.066 · Cited by 186 · see citing works
The evolutionary origin of the vertebrate basal ganglia and its role in action selection
Grillner, S., Robertson, B., & Stephenson‐Jones, M. (2013) · The Journal of Physiology · doi:10.1113/jphysiol.2012.246660 · Cited by 184 · cited 1× · see citing works
“Critical subcortical pathways for the initiation and control of locomotion via the basal ganglia are conserved throughout the vertebrate lineage both anatomically and functionally (Grillner et al., 2013).”
Kubo, F., Hablitzel, B., Dal Maschio, M., Driever, W., Baier, H., & Arrenberg, A. B. (2014) · Neuron · doi:10.1016/j.neuron.2014.02.043 · Cited by 182 · cited 2× · see citing works
“This suggests connections are indirect and via nontectal retino-recipient areas such as the pretectum, recently identified to be involved in processing whole-field motion in zebrafish (Kubo et al., 2014; Portugues et al., 2014).”
Prey capture by larval zebrafish: evidence for fine axial motor control
Borla, M. A., Palecek, B., Budick, S., & O’Malley, D. M. (2002) · Brain, Behavior and Evolution · doi:10.1159/000066699 · Cited by 180 · cited 2× · see citing works
“The nMLF has been implicated in other behaviors reliant on vision such as prey tracking and capture (Bianco et al., 2011; Borla et al., 2002; Westphal and O’Malley, 2013), since ablation of large cells impairs the ability of larvae to feed (Gahtan et al.”
Self-citationThe neural basis of visual behaviors in the larval zebrafish
Portugues, R., & Engert, F. (2009) · Current Opinion in Neurobiology · doi:10.1016/j.conb.2009.10.007 · Cited by 171 · cited 2× · see citing works
“…is the optomotor response (OMR) (Bilotta, 2000; Neuhauss et al., 1999) in which larvae respond to whole-field visual motion (Maaswinkel and Li, 2003; Orger et al., 2000) by swimming and turning to maintain a stable position with respect to their visual environment (Portugues and Engert, 2009).”
Self-citationRitter, D. A., Bhatt, D. H., & Fetcho, J. R. (2001) · The Journal of Neuroscience · doi:10.1523/jneurosci.21-22-08956.2001 · Cited by 159 · cited 1× · see citing works
“In zebrafish some excitatory classes of spinal interneurons are exclusively active during fast or slow swimming (McLean et al., 2008; Ritter et al., 2001).”
How neurons generate behaviour in a hatchling amphibian tadpole: an outline
Roberts, A. (2010) · Frontiers in Behavioral Neuroscience · doi:10.3389/fnbeh.2010.00016 · Cited by 145 · cited 2× · see citing works
“…of these interneurons and their genetic identities have been identified across vertebrate model organisms (Goulding, 2009; Hale et al., 2001; Roberts et al., 2010), and functional studies have revealed distinct patterns of activity across these identified interneuron types and their role in…”
The tangential nucleus controls a gravito-inertial vestibulo-ocular reflex
Bianco, I. H., Ma, L.-H., Schoppik, D., Robson, D. N., Orger, M. B., Beck, J. C., Li, J. M., Schier, A. F., Engert, F., & Baker, R. (2012) · Current Biology · doi:10.1016/j.cub.2012.05.026 · Cited by 134 · cited 2× · see citing works
“The tangential nucleus contributes to vestibular correction of eye position by relaying information sensed by utricular otoliths in the ear to oculomotor nuclei, with axonal arbors targeting the contralateral nMLF (Bianco et al., 2012) (Figure 8).”
Self-citationCabelguen, J.-M., Bourcier-Lucas, C., & Dubuc, R. (2003) · The Journal of Neuroscience · doi:10.1523/jneurosci.23-06-02434.2003 · Cited by 134 · see citing works
Spinal projection neurons control turning behaviors in zebrafish
Huang, K.-H., Ahrens, M. B., Dunn, T. W., & Engert, F. (2013) · Current Biology · doi:10.1016/j.cub.2013.06.044 · Cited by 133 · cited 5× · see citing works
“Following previously described methods (Huang et al., 2013; Orger et al., 2008) we used two-photon laser ablation of bilaterally–symmetrical individual neurons to test the effect on optomotor swimming in response to various speeds of visual gratings (Experimental Procedures).”
InfluentialSelf-citationBrustein, E., Chong, M., Holmqvist, B., & Drapeau, P. (2003) · Journal of Neurobiology · doi:10.1002/neu.10292 · Cited by 126 · cited 1× · see citing works
“Serotonin has been shown to reduce the interbout period, resulting in increased motor output, in active and fictive swimming (Brustein et al., 2003).”
McLean, D. L., & Fetcho, J. R. (2004) · Journal of Comparative Neurology · doi:10.1002/cne.20281 · Cited by 124 · cited 2× · see citing works
“…are other neuromodulators thought to be present in the area immediately surrounding the nMLF, with identified terminals positive for TH and 5-HT (McLean and Fetcho, 2004), and dopaminergic and noradrenergic tracts targeting the area (Tay et al., 2011), but direct connections with nMLF neurons…”
Adaptive locomotor behavior in larval zebrafish
Portugues, R., & Engert, F. (2011) · Frontiers in Systems Neuroscience · doi:10.3389/fnsys.2011.00072 · Cited by 119 · cited 2× · see citing works
“Head-Embedded Behavioral Assay The assay was performed as in Portugues and Engert (2011) except that the tail was tracked with custom-written software (Labview) in real time at 700 Hz.”
MethodResultSelf-citationMenelaou, E., & McLean, D. L. (2012) · The Journal of Neuroscience · doi:10.1523/jneurosci.1809-12.2012 · Cited by 116 · cited 2× · see citing works
“Work incorporating network rhythmicity and intrinsic properties of motor neurons showed how zebrafish can accomplish increases in swimming frequency using a specific pattern of motor neuron recruitment (Menelaou and McLean, 2012), and this pattern of segregation of motor neuron pool by swimming frequency continues to…”
Characterization of genetically targeted neuron types in the zebrafish optic tectum
Robles, E., Smith, S. J., & Baier, H. (2011) · Frontiers in Neural Circuits · doi:10.3389/fncir.2011.00001 · Cited by 113 · see citing works
Sato, T., Hamaoka, T., Aizawa, H., Hosoya, T., & Okamoto, H. (2007) · Journal of Neuroscience · doi:10.1523/jneurosci.0883-07.2007 · Cited by 109 · cited 1× · see citing works
“These RS neurons are strategically located in the pathway, where visual, postural, and other sensory inputs important for selection of appropriate motor programs are thought to converge (Haehnel et al., 2012; Kohashi and Oda, 2008; Sato et al., 2007).”
Grading movement strength by changes in firing intensity versus recruitment of spinal interneurons
Bhatt, D. H., McLean, D. L., Hale, M. E., & Fetcho, J. R. (2007) · Neuron · doi:10.1016/j.neuron.2006.11.011 · Cited by 103 · cited 2× · see citing works
“Like motor neurons, excitatory spinal interneurons are also recruited in a dorso-ventral pattern depending on the intensity of locomotion (Bhatt et al., 2007; McLean et al., 2007; McLean et al., 2008).”
Pattern of innervation and recruitment of different classes of motoneurons in adult zebrafish
Ampatzis, K., Song, J., Ausborn, J., & El Manira, A. (2013) · Journal of Neuroscience · doi:10.1523/jneurosci.0896-13.2013 · Cited by 102 · cited 2× · see citing works
“…of motor neurons showed how zebrafish can accomplish increases in swimming frequency using a specific pattern of motor neuron recruitment (Menelaou and McLean, 2012), and this pattern of segregation of motor neuron pool by swimming frequency continues to adult stages (Ampatzis et al., 2013).”
Berkowitz, A. (2010) · Frontiers in Behavioral Neuroscience · doi:10.3389/fnbeh.2010.00036 · Cited by 102 · cited 2× · see citing works
“A new principle in spinal circuit organization has emerged in which different outputs arise from a shared pool of available neurons, through the selective recruitment of sets of multifunctional and specialized interneuron classes (Berkowitz et al., 2010).”
BackgroundEffects of abnormal lighting on the development of zebrafish visual behavior
Bilotta, J. A. (2000) · Behavioural Brain Research · doi:10.1016/s0166-4328(00)00264-3 · Cited by 89 · cited 2× · see citing works
“One of these innate sensory-driven locomotor behaviors is the optomotor response (OMR) (Bilotta, 2000; Neuhauss et al., 1999), in which larvae respond to whole-field visual motion (Maaswinkel and Li, 2003; Orger et al.”
Glutamatergic mechanisms for speed control and network operation in the rodent locomotor CPG
Talpalar, A. E. (2010) · Frontiers in Neural Circuits · doi:10.3389/fncir.2010.00019 · Cited by 82 · cited 2× · see citing works
“Work in the mammalian spinal cord revealed some of the complexity of glutamatergic inputs, showing that non-NMDA and NMDA receptor systems can function in parallel and independently to contribute to locomotor speed and stability (Talpalar and Kiehn, 2010).”
Locomotion of fish evoked by electrical stimulation of the brain
Kashin, S. M., Feldman, A. G., & Orlovsky, G. N. (1974) · Brain Research · doi:10.1016/0006-8993(74)90891-9 · Cited by 81 · see citing works
A novel neural substrate for the transformation of olfactory inputs into motor output
Derjean, D., Moussaddy, A., Atallah, E., St-Pierre, M., Auclair, F., Chang, S., Ren, X., Zielinski, B., & Dubuc, R. (2010) · PLoS Biology · doi:10.1371/journal.pbio.1000567 · Cited by 80 · see citing works
Rhythmic motor activity evoked by NMDA in the spinal zebrafish larva
McDearmid, J. R., & Drapeau, P. (2006) · Journal of Neurophysiology · doi:10.1152/jn.00844.2005 · Cited by 79 · cited 2× · see citing works
“, 2002; Jordan, 1998) by activating NMDA receptors essential to initiate rhythmic locomotion (Hägglund et al., 2010; McDearmid and Drapeau, 2006; Roberts et al., 2008).”
Gahtan, E., & O'Malley, D. M. (2003) · Journal of Comparative Neurology · doi:10.1002/cne.10621 · Cited by 77 · see citing works
Self-citationEncoding and decoding of reticulospinal commands
Deliagina, T. G., Zelenin, P. V., & Orlovsky, G. N. (2002) · Brain Research Reviews · doi:10.1016/s0165-0173(02)00199-6 · Cited by 77 · cited 4× · see citing works
“RS neurons excite spinal CPGs (Buchanan and Grillner, 1987; Deliagina et al., 2002; Jordan, 1998) by activating NMDA receptors essential to initiate rhythmic locomotion (Hagglund et al.”
BackgroundInfluentialSpatio-temporal frequency characteristics of the optomotor response in zebrafish
Maaswinkel, H., & Li, L. (2003) · Vision Research · doi:10.1016/s0042-6989(02)00395-4 · Cited by 75 · cited 4× · see citing works
“, 1999), in which larvae respond to whole-field visual motion (Maaswinkel and Li, 2003; Orger et al., 2000) by swimming and turning to maintain a stable position with respect to their visual environment (Portugues and Engert, 2009).”
InfluentialSelective Responses to Tonic Descending Commands by Temporal Summation in a Spinal Motor Pool
Wang, W., & McLean, D. L. (2014) · Neuron · doi:10.1016/j.neuron.2014.06.021 · Cited by 74 · see citing works
Wiggin, T. D., Anderson, T. M., Eian, J., Peck, J. H., & Masino, M. A. (2012) · Journal of Neurophysiology · doi:10.1152/jn.00233.2012 · Cited by 74 · cited 2× · see citing works
“, 2010), and functional studies have revealed distinct patterns of activity across these identified interneuron types and their role in the generation of rhythmic locomotor patterns (Crone et al., 2009; Gosgnach et al., 2006; Wyart et al., 2009).”
Green, M. H., Ho, R. K., & Hale, M. E. (2011) · Journal of Experimental Biology · doi:10.1242/jeb.057497 · Cited by 73 · cited 2× · see citing works
“P A A uthor M anuscript with an alternating pectoral fin pattern (Green et al., 2011).”
Stimulation of the pontomedullary reticular formation initiates locomotion in decerebrate birds
Steeves, J. D., Sholomenko, G. N., & Webster, D. M. S. (1987) · Brain Research · doi:10.1016/0006-8993(87)91406-5 · Cited by 72 · cited 1× · see citing works
“One such motor structure is the mesencephalic locomotor region (MLR), an area where electrical stimulation can initiate locomotion, as first demonstrated in cats nearly 50 years ago, and which functions across locomotor modalities, including walking, flying, and swimming (Cabelguen et al., 2003; Kashin et al., 1974; S…”
Development of the cholinergic system in the brain and retina of the zebrafish
Arenzana, F. J., Clemente, D., Sánchez-González, R., Porteros, Á., Aijón, J., & Arévalo, R. (2005) · Brain Research Bulletin · doi:10.1016/j.brainresbull.2005.03.006 · Cited by 69 · cited 2× · see citing works
“in the zebrafish, with no unidentified midbrain clusters of cholinergic cells observed in larval immunostaining (Arenzana et al., 2005).”
Origin of excitatory drive to a spinal locomotor network
Roberts, A., Li, W., Soffe, S. R., & Wolf, E. (2007) · Brain Research Reviews · doi:10.1016/j.brainresrev.2007.06.015 · Cited by 66 · cited 2× · see citing works
“, 2002; Jordan, 1998) by activating NMDA receptors essential to initiate rhythmic locomotion (Hagglund et al., 2010; McDearmid and Drapeau, 2006; Roberts et al., 2008).”
BackgroundBrocard, F., Ryczko, D., Fénelon, K., Hatem, R., Gonzales, D., Auclair, F., & Dubuc, R. (2010) · The Journal of Neuroscience · doi:10.1523/jneurosci.3433-09.2010 · Cited by 64 · cited 2× · see citing works
“Serotonin has been shown to reduce the interbout period, resulting in increased motor output, in active and fictive swimming (Brustein et al., 2003).”
BackgroundWestphal, R. E., & O'Malley, D. M. (2013) · Frontiers in Neural Circuits · doi:10.3389/fncir.2013.00108 · Cited by 58 · cited 1× · see citing works
“The nMLF has been implicated in other behaviors reliant on vision such as prey tracking and capture (Bianco et al., 2011; Borla et al., 2002; Westphal and O’Malley, 2013), since ablation of large cells impairs the ability of larvae to feed (Gahtan et al.”
Self-citationSankrithi, N. S., & O'Malley, D. M. (2010) · Neuroscience · doi:10.1016/j.neuroscience.2010.01.003 · Cited by 52 · see citing works
Self-citationHaehnel, M., Taguchi, M., & Liao, J. C. (2011) · The Journal of Comparative Neurology · doi:10.1002/cne.22798 · Cited by 35 · see citing works
Li, W., Perrins, R., Walford, A., & Roberts, A. (2002) · Journal of Comparative Physiology A · doi:10.1007/s00359-002-0372-0 · Cited by 26 · cited 2× · see citing works
“(Li et al., 2003) or build-up of adenosine (Dale, 2002) may contribute to bout termination.”
BackgroundResetting intrinsic purinergic modulation of neural activity: an associative mechanism?
Dale, N. (2002) · The Journal of Neuroscience · doi:10.1523/jneurosci.22-23-10461.2002 · Cited by 23 · cited 2× · see citing works
“, 2003) or build-up of adenosine in the spinal cord (Dale, 2002) may contribute to bout termination.”
Background
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- Shik, 1966, Control of walking by means of electrical stimulation of the midbrain, Biofizika, 11, 659
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Brain-wide mapping of neural activity controlling zebrafish exploratory locomotion
Dunn, T. W., Mu, Y., Narayan, S., Randlett, O., Naumann, E. A., Yang, C.-T., Schier, A. F., Freeman, J., Engert, F., & Ahrens, M. B. (2016) · eLife · doi:10.7554/elife.12741 · Cited by 312 · see citing works
“, 2014), the midbrain tegmental nMLF has been shown to regulate swimming (Severi et al., 2014; Thiele et al., 2014; Wang and McLean, 2014).”
Self-citationRapid whole brain imaging of neural activity in freely behaving larval zebrafish (Danio rerio)
Cong, L., Wang, Z., Chai, Y., Hang, W., Shang, C., Yang, W., Bai, L., Du, J., Wang, K., & Wen, Q. (2017) · eLife · doi:10.7554/elife.28158 · Cited by 321 · see citing works
From Whole-Brain Data to Functional Circuit Models: The Zebrafish Optomotor Response
Naumann, E. A., Fitzgerald, J. E., Dunn, T. W., Rihel, J., Sompolinsky, H., & Engert, F. (2016) · Cell · doi:10.1016/j.cell.2016.10.019 · Cited by 315 · see citing works
“…or neighboring neurons may be functional homologues of the mesencephalic locomotor region in mammals (Dunn et al., 2016; Ryczko and Dubuc, 2013; Severi et al., 2014), whereas the vSPNs are functionally and anatomically similar to neurons in the mammalian reticular formation (Armstrong, 1988).”
Self-citationZebrafish Behavior: Opportunities and Challenges
Orger, M. B., & de Polavieja, G. G. (2017) · Annual Review of Neuroscience · doi:10.1146/annurev-neuro-071714-033857 · Cited by 285 · see citing works
“In the case of forward locomotion, larvae, when driven to swim with increasing speeds, at first increase bout duration smoothly but eventually show an abrupt change in gait (Severi et al. 2014).”
BackgroundSelf-citationVideo-rate volumetric functional imaging of the brain at synaptic resolution
Lu, R., Sun, W., Liang, Y., Kerlin, A., Bierfeld, J., Seelig, J. D., Wilson, D. E., Scholl, B., Mohar, B., Tanimoto, M., et al. (2017) · Nature Neuroscience · doi:10.1038/nn.4516 · Cited by 272 · see citing works
Self-citationStructure of the Zebrafish Locomotor Repertoire Revealed with Unsupervised Behavioral Clustering
Marques, J. C., Lackner, S., Félix, R., & Orger, M. B. (2018) · Current Biology · doi:10.1016/j.cub.2017.12.002 · Cited by 245 · see citing works
Self-citationPan-neuronal calcium imaging with cellular resolution in freely swimming zebrafish
Kim, D. H., Kim, J., Marques, J. C., Grama, A., Hildebrand, D. G. C., Gu, W., Li, J. M., & Robson, D. N. (2017) · Nature Methods · doi:10.1038/nmeth.4429 · Cited by 228 · see citing works
Self-citationA dedicated visual pathway for prey detection in larval zebrafish
Semmelhack, J. L., Donovan, J. C., Thiele, T. R., Kuehn, E., Laurell, E., & Baier, H. (2014) · eLife · doi:10.7554/elife.04878 · Cited by 204 · see citing works
“DOI: 10.7554/eLife.04878 14 of 19 Research article orientation (Thiele et al., 2014), as well as speed (Severi et al., 2014).”
BackgroundInfluentialThe tectum/superior colliculus as the vertebrate solution for spatial sensory integration and action
Isa, T., Marquez-Legorreta, E., Grillner, S., & Scott, E. K. (2021) · Current Biology · doi:10.1016/j.cub.2021.04.001 · Cited by 206 · see citing works
The Serotonergic System Tracks the Outcomes of Actions to Mediate Short-Term Motor Learning
Kawashima, T., Zwart, M., Yang, C.-T., Mensh, B. D., & Ahrens, M. B. (2016) · Cell · doi:10.1016/j.cell.2016.09.055 · Cited by 166 · see citing works
“The DRN may change locomotor drive by directly modulating premotor centers, which may include reticulospinal neurons in thehindbrainor in thenucleusof themedial longitudinal fasciculus (McLean and Fetcho, 2004; Severi et al., 2014; Vertes and Linley, 2008).”
Probabilistic Models of Larval Zebrafish Behavior Reveal Structure on Many Scales
Johnson, R. E., Linderman, S. W., Panier, T., Wee, C. L., Song, E. Y., Herrera, K. J., Miller, A. T., & Engert, F. (2019) · Current Biology · doi:10.1016/j.cub.2019.11.026 · Cited by 161 · see citing works
“To coordinate these behavioral patterns, satiety cues may separately modulate midbrain nuclei involved in regulating bout timing [61], nMLF neurons involved in regulating swim bout duration and tail-beat frequency [45], and oculomotor centers involved in controlling eye position [62, 63, 64].”
BackgroundSelf-citationdal Maschio, M., Donovan, J. C., Helmbrecht, T. O., & Baier, H. (2017) · Neuron · doi:10.1016/j.neuron.2017.04.034 · Cited by 169 · see citing works
Ontogeny of collective behavior reveals a simple attraction rule
Hinz, R. C., & de Polavieja, G. G. (2017) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1616926114 · Cited by 149 · see citing works
Cerebellar Neurodynamics Predict Decision Timing and Outcome on the Single-Trial Level
Lin, Q., Manley, J., Helmreich, M., Schlumm, F., Li, J. M., Robson, D. N., Engert, F., Schier, A., Nöbauer, T., & Vaziri, A. (2020) · Cell · doi:10.1016/j.cell.2019.12.018 · Cited by 122 · see citing works
Self-citationTopography of a Visuomotor Transformation
Helmbrecht, T. O., dal Maschio, M., Donovan, J. C., Koutsouli, S., & Baier, H. (2018) · Neuron · doi:10.1016/j.neuron.2018.10.021 · Cited by 113 · see citing works
The Zebrafish Visual System: From Circuits to Behavior
Bollmann, J. H. (2019) · Annual Review of Vision Science · doi:10.1146/annurev-vision-091718-014723 · Cited by 123 · see citing works
A Brain Wide Circuit Model of Heat Evoked Swimming Behavior in Larval Zebrafish
Haesemeyer, M., Robson, D. N., Li, J., Schier, A. F., & Engert, F. (2018) · Neuron · doi:10.1016/j.neuron.2018.04.013 · Cited by 99 · see citing works
Self-citationControl of Movement Initiation Underlies the Development of Balance
Ehrlich, D., & Schoppik, D. (2017) · Current Biology · doi:10.1016/j.cub.2016.12.003 · Cited by 83 · see citing works
Shams, S., Rihel, J., Ortíz, J. G., & Gerlai, R. T. (2017) · Neuroscience & Biobehavioral Reviews · doi:10.1016/j.neubiorev.2017.09.002 · Cited by 94 · see citing works
“Using a high speed camera, detailed kinematic analysis of larval spontaneous and visually-evoked motor responses can detect alterations in muscle coordination, inter-bout intervals, swim speed, and other parameters (Fontaine et al., 2008; Severi et al., 2014).”
BackgroundPrinciples Governing Locomotion in Vertebrates: Lessons From Zebrafish
Berg, E. M., Björnfors, E. R., Pallucchi, I., Picton, L. D., & Manira, A. E. (2018) · Frontiers in Neural Circuits · doi:10.3389/fncir.2018.00073 · Cited by 98 · see citing works
Left Habenular Activity Attenuates Fear Responses in Larval Zebrafish
Duboué, E. R., Hong, E., Eldred, K. C., & Halpern, M. E. (2017) · Current Biology · doi:10.1016/j.cub.2017.06.017 · Cited by 76 · see citing works
Evidence accumulation during a sensorimotor decision task revealed by whole-brain imaging
Dragomir, E. I., Štih, V., & Portugues, R. (2020) · Nature Neuroscience · doi:10.1038/s41593-019-0535-8 · Cited by 89 · see citing works
Self-citationLarge-scale imaging in small brains
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“Immobilized preparations allow for the study of behaviors such as the optokinetic response [17,24,53], motor adaptation [5,54], associative learning[21] and locomotion [55].”
Self-citationRheotaxis revisited: a multi-behavioral and multisensory perspective on how fish orient to flow
Coombs, S., Bak-Coleman, J., & Montgomery, J. (2020) · Journal of Experimental Biology · doi:10.1242/jeb.223008 · Cited by 88 · see citing works
Selective Responses to Tonic Descending Commands by Temporal Summation in a Spinal Motor Pool
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A primal role for the vestibular sense in the development of coordinated locomotion
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“These neurons are distinguished by bifurcating axons that project rostrally, ascending to a midbrain nucleus, the nucleus of the medial longidutinal fasciculus, a region responsible for descending control of swim kinematics (Severi et al., 2014; Thiele et al., 2014; Wang and McLean, 2014).”
BackgroundThe intrinsic operation of the networks that make us locomote
Grillner, S. E., & Manira, A. E. (2015) · Current Opinion in Neurobiology · doi:10.1016/j.conb.2015.01.003 · Cited by 75 · see citing works
Development of vestibular behaviors in zebrafish
Bagnall, M. W., & Schoppik, D. (2018) · Current Opinion in Neurobiology · doi:10.1016/j.conb.2018.06.004 · Cited by 66 · see citing works
Sternberg, J. R., Severi, K. E., Fidelin, K., Gómez, J., Ihara, H., Alcheikh, Y., Hubbard, J. M., Kawakami, K., Suster, M. L., & Wyart, C. (2016) · Current Biology · doi:10.1016/j.cub.2016.06.037 · Cited by 67 · see citing works
Self-citationEarly-Life Social Experience Shapes Social Avoidance Reactions in Larval Zebrafish
Groneberg, A. H., Marques, J. C., Martins, A. L., del Corral, R. D., de Polavieja, G. G., & Orger, M. B. (2020) · Current Biology · doi:10.1016/j.cub.2020.07.088 · Cited by 67 · see citing works
Self-citationVladimirov, N., Wang, C., Höckendorf, B., Pujala, A., Tanimoto, M., Mu, Y., Yang, C.-T., Wittenbach, J. D., Freeman, J., Preibisch, S., et al. (2018) · Nature Methods · doi:10.1038/s41592-018-0221-x · Cited by 76 · see citing works
Parallel Channels for Motion Feature Extraction in the Pretectum and Tectum of Larval Zebrafish
Wang, K., Hinz, J., Zhang, Y., Thiele, T. R., & Arrenberg, A. B. (2020) · Cell Reports · doi:10.1016/j.celrep.2019.12.031 · Cited by 66 · see citing works
A cerebellar internal model calibrates a feedback controller involved in sensorimotor control
Markov, D., Petrucco, L., Kist, A., & Portugues, R. (2020) · Nature Communications · doi:10.1038/s41467-021-26988-0 · Cited by 70 · see citing works
“Motor ROIs were located predominantly in the hindbrain and in the nucleus of the medial longitudinal fasciculus in the midbrain (Severi et al., 2014), and sensory ROIs were mostly present in the hindbrain, midbrain and diencephalic regions, including the inferior olive, dorsal raphe, optic tectum, pretectum, and thala…”
BackgroundSelf-citationVisual Control of Walking Speed in Drosophila
Creamer, M. S., Mano, O., & Clark, D. A. (2018) · Neuron · doi:10.1016/j.neuron.2018.10.028 · Cited by 67 · see citing works
Voltage imaging identifies spinal circuits that modulate locomotor adaptation in zebrafish
Böhm, U. L., Kimura, Y., Kawashima, T., Ahrens, M. B., Higashijima, S., Engert, F., & Cohen, A. E. (2022) · Neuron · doi:10.1016/j.neuron.2022.01.001 · Cited by 68 · see citing works
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Gaze-Stabilizing Central Vestibular Neurons Project Asymmetrically to Extraocular Motoneuron Pools
Schoppik, D., Bianco, I. H., Prober, D. A., Douglass, A. D., Robson, D. N., Li, J., Greenwood, J. S. F., Soucy, E. R., Engert, F., & Schier, A. F. (2017) · Journal of Neuroscience · doi:10.1523/jneurosci.1711-17.2017 · Cited by 52 · see citing works
“These same neurons project to nuclei responsible for movement initiation and pitch tilts (Pavlova and Deliagina, 2002; Severi et al., 2014; Thiele et al., 2014; Wang and McLean, 2014).”
BackgroundSelf-citationThe Structure and Timescales of Heat Perception in Larval Zebrafish
Haesemeyer, M., Robson, D. N., Li, J., Schier, A. F., & Engert, F. (2015) · Cell Systems · doi:10.1016/j.cels.2015.10.010 · Cited by 52 · see citing works
Self-citationZebrafish sleep: from geneZZZ to neuronZZZ
Barlow, I. L., & Rihel, J. (2017) · Current Opinion in Neurobiology · doi:10.1016/j.conb.2017.02.009 · Cited by 60 · see citing works
Brainstem circuits encoding start, speed, and duration of swimming in adult zebrafish
Berg, E. M., Mrowka, L., Bertuzzi, M., Madrid, D., Picton, L. D., & Manira, A. E. (2022) · Neuron · doi:10.1016/j.neuron.2022.10.034 · Cited by 57 · see citing works
“Ablation of the large nMLF neurons (MeLr, MeLc, MeLm, and MeM) resulted in a deficit in achieving high speeds of swimming in response to visual stimuli.(28) Such an effect on swimming speed was not confirmed using unilateral ablation of neurons of the nMLF.”
BackgroundOxytocin Receptors Regulate Social Preference in Zebrafish
Landin, J., Hovey, D., Xu, B., Lagman, D., Zettergren, A., Larhammar, D., Kettunen, P., & Westberg, L. (2020) · Scientific Reports · doi:10.1038/s41598-020-61073-4 · Cited by 63 · see citing works
Hypocretin neuron-specific transcriptome profiling identifies the sleep modulator Kcnh4a
Yelin‐Bekerman, L., Elbaz, I., Diber, A., Dahary, D., Gibbs-Bar, L., Alon, S., Lerer‐Goldshtein, T., & Appelbaum, L. (2015) · eLife · doi:10.7554/elife.08638 · Cited by 61 · see citing works
“It is a simple and diurnal vertebrate that combines powerful genetic tools with conserved anatomy and function of the brain (Severi et al., 2014; Thiele et al., 2014; Romano et al., 2015).”
BackgroundMechanosensory neurons control the timing of spinal microcircuit selection during locomotion
Knafo, S., Fidelin, K., Prendergast, A. E., Tseng, P.-E. B., Parrin, A., Dickey, C. W., Böhm, U. L., Figueiredo, S. N., Thouvenin, O., Pascal‐Moussellard, H., et al. (2017) · eLife · doi:10.7554/elife.25260 · Cited by 52 · see citing works
“…versus slow locomotion in our silencing experiments, we separated the fast from the slow locomotor regime in elicited escape responses by applying a cutoff at 30 Hz, a threshold that defines the recruitment of fast motor neurons during swimming (McLean et al., 2008; Severi et al., 2014) (Figure 5A–”
MethodBrain-Wide Mapping of Water Flow Perception in Zebrafish
Vanwalleghem, G. C., Schuster, K., Taylor, M. A., Favre‐Bulle, I. A., & Scott, E. K. (2020) · Journal of Neuroscience · doi:10.1523/jneurosci.0049-20.2020 · Cited by 55 · see citing works
Knogler, L. D., Kist, A. M., & Portugues, R. (2019) · eLife · doi:10.7554/elife.42138 · Cited by 63 · see citing works
“7 Hz (N = 30 fish; Figure 5f), consistent with the slow swim bout frequency reported for restrained zebrafish larvae (Severi et al., 2014).”
BackgroundSelf-citationFeierstein, C. E., Portugues, R., & Orger, M. B. (2014) · Neuroscience · doi:10.1016/j.neuroscience.2014.11.046 · Cited by 52 · see citing works
Self-citationBehavioral Analysis of Dopaminergic Activation in Zebrafish and Rats Reveals Similar Phenotypes
Ek, F., Malo, M., Andersson, M. Å., Wedding, C., Kronborg, J., Svensson, P., Waters, N., Petersson, P., & Olsson, R. (2016) · ACS Chemical Neuroscience · doi:10.1021/acschemneuro.6b00014 · Cited by 53 · see citing works
Barrios, J. P., Wang, W., England, R., Reifenberg, E., & Douglass, A. D. (2020) · Current Biology · doi:10.1016/j.cub.2020.09.002 · Cited by 52 · see citing works
Kist, A. M., & Portugues, R. (2019) · Cell Reports · doi:10.1016/j.celrep.2019.09.024 · Cited by 55 · see citing works
Self-citationEvolutionary divergence of locomotion in two related vertebrate species
Rajan, G., Lafaye, J., Faini, G., Tano, M. C., Duroure, K., Tanese, D., Panier, T., Candelier, R., Henninger, J., Britz, R., et al. (2022) · Cell Reports · doi:10.1016/j.celrep.2022.110585 · Cited by 55 · see citing works
Carbo-Tano, M., Lapoix, M., Jia, X., Thouvenin, O., Pascucci, M., Auclair, F., Quan, F. B., Albadri, S., Aguda, V., Farouj, Y., et al. (2023) · Nature Neuroscience · doi:10.1038/s41593-023-01418-0 · Cited by 58 · see citing works
Self-citationHarmon, T. C., Magaram, U., McLean, D. L., & Raman, I. M. (2017) · eLife · doi:10.7554/elife.22537 · Cited by 48 · see citing works
“DOI: 10.7554/eLife.22537 17 of 26 Smetana et al., 2010; Kimura et al., 2013; Severi et al., 2014; Wang and McLean, 2014; Naumann et al., 2016; Juvin et al., 2016).”
Influential50 Hz volumetric functional imaging with continuously adjustable depth of focus
Lu, R., Tanimoto, M., Koyama, M., & Ji, N. (2018) · Biomedical Optics Express · doi:10.1364/boe.9.001964 · Cited by 45 · see citing works
Biomechanics and neural circuits for vestibular-induced fine postural control in larval zebrafish
Sugioka, T., Tanimoto, M., & Higashijima, S. (2023) · Nature Communications · doi:10.1038/s41467-023-36682-y · Cited by 39 · see citing works
Efferent modulation of spontaneous lateral line activity during and after zebrafish motor commands
Lunsford, E. T., Skandalis, D. A., & Liao, J. C. (2019) · Journal of Neurophysiology · doi:10.1152/jn.00594.2019 · Cited by 38 · see citing works
Caenorhabditis elegans excitatory ventral cord motor neurons derive rhythm for body undulation
Wen, Q., Gao, S., & Zhen, M. (2018) · Philosophical Transactions of the Royal Society B Biological Sciences · doi:10.1098/rstb.2017.0370 · Cited by 42 · see citing works
A 2D virtual reality system for visual goal-driven navigation in zebrafish larvae
Jouary, A., Haudrechy, M., Candelier, R., & Sumbre, G. (2016) · Scientific Reports · doi:10.1038/srep34015 · Cited by 41 · see citing works
The Visual Systems of Zebrafish
Baier, H., & Scott, E. K. (2024) · Annual Review of Neuroscience · doi:10.1146/annurev-neuro-111020-104854 · Cited by 49 · see citing works
Spinal sensory neurons project onto the hindbrain to stabilize posture and enhance locomotor speed
Wu, M., Tano, M. C., Mirat, O., Lejeune, F., Roussel, J., Quan, F. B., Fidelin, K., & Wyart, C. (2021) · Current Biology · doi:10.1016/j.cub.2021.05.042 · Cited by 54 · see citing works
Social Status–Dependent Shift in Neural Circuit Activation Affects Decision Making
Miller, T. H., Clements, K. N., Ahn, S., Park, C., Ji, E. H., & Issa, F. A. (2017) · Journal of Neuroscience · doi:10.1523/jneurosci.1548-16.2017 · Cited by 37 · see citing works
“Moreover, the parameter agmax was chosen to reflect the availability of 2-AG (Song et al., 2015).”
BackgroundMethodInfluentialWhole-field visual motion drives swimming in larval zebrafish via a stochastic process
Portugues, R., Haesemeyer, M., Blum, M. L., & Engert, F. (2015) · Journal of Experimental Biology · doi:10.1242/jeb.118299 · Cited by 29 · see citing works
“This functional form was chosen because it both captures the most salient features of the behavior, namely a decay for small speeds to an asymptotic value, and it allows an analytical solution to be found for certain models to be considered later.”
BackgroundInfluentialSelf-citationSpinal cords: Symphonies of interneurons across species
Wilson, A. C., & Sweeney, L. B. (2023) · Frontiers in Neural Circuits · doi:10.3389/fncir.2023.1146449 · Cited by 36 · see citing works
“During fast swimming, V0v neurons are not active,and the head is no longer stable at these higher frequencies (McLean et al., 2008; McLean and Fetcho, 2009; Severi et al., 2014).”
BackgroundImaging Neuronal Activity in the Optic Tectum of Late Stage Larval Zebrafish
Bergmann, K., Santoscoy, P. L. M., Lygdas, K., Nikolaeva, Y. S., MacDonald, R. B., Cunliffe, V. T., & Nikolaev, A. (2018) · Journal of Developmental Biology · doi:10.3390/jdb6010006 · Cited by 31 · see citing works
A population code for spatial representation in the zebrafish telencephalon
Yang, C., Mammen, L., Kim, B., Li, M., Robson, D. N., & Li, J. M. (2024) · Nature · doi:10.1038/s41586-024-07867-2 · Cited by 38 · see citing works
“In contrast to head direction cells and speed cells, which are both enriched in the fish rhombencephalon 7,28,29 , cells that encode spatial position (that is, PCs) are enriched in the fish telencephalon.”
Braun, D., Rosenberg, A. M., Rabaniam, E., Haruvi, R., Malamud, D., Barbara, R., Aiznkot, T., Levavi‐Sivan, B., & Kawashima, T. (2024) · Molecular Psychiatry · doi:10.1038/s41380-023-02391-7 · Cited by 35 · see citing works
“The large size of the imaged arena resulted in lower pixel resolution relative to previous body kinematics studies [40 – 42].”
BackgroundResultSeveri, K. E., Böhm, U. L., & Wyart, C. (2018) · Scientific Reports · doi:10.1038/s41598-018-31968-4 · Cited by 29 · see citing works
Self-citationThe preoptic area and dorsal habenula jointly support homeostatic navigation in larval zebrafish
Palieri, V., Paoli, E., Wu, Y. K., Haesemeyer, M., Kadow, I. C. G., & Portugues, R. (2024) · Current Biology · doi:10.1016/j.cub.2023.12.030 · Cited by 26 · see citing works
Self-citationCircuit Organization Underlying Optic Flow Processing in Zebrafish
Matsuda, K., & Kubo, F. (2021) · Frontiers in Neural Circuits · doi:10.3389/fncir.2021.709048 · Cited by 30 · see citing works
Jha, U., & Thirumalai, V. (2020) · Current Biology · doi:10.1016/j.cub.2019.12.064 · Cited by 32 · see citing works
A robust receptive field code for optic flow detection and decomposition during self-motion
Zhang, Y., Huang, R., Nörenberg, W., & Arrenberg, A. B. (2022) · Current Biology · doi:10.1016/j.cub.2022.04.048 · Cited by 29 · see citing works
Specialized neurons in the right habenula mediate response to aversive olfactory cues
Choi, J.-H., Duboue, E. R., Macurak, M., et al. (2021) · eLife · doi:10.7554/elife.72345 · Cited by 31 · see citing works
Functional and ultrastructural analysis of reafferent mechanosensation in larval zebrafish
Odstrcil, I., Petkova, M. D., Haesemeyer, M., Boulanger-Weill, J., Nikitchenko, M., Gagnon, J. A., Oteíza, P., Schalek, R. L., Peleg, A., Portugues, R., et al. (2021) · Current Biology · doi:10.1016/j.cub.2021.11.007 · Cited by 28 · see citing works
Self-citationThe Cellular Organization of Zebrafish Visuomotor Circuits
Orger, M. B. (2016) · Current Biology · doi:10.1016/j.cub.2016.03.054 · Cited by 28 · see citing works
Self-citationResilience of neural networks for locomotion
Haspel, G., Severi, K. E., Fauci, L., Cohen, N., Tytell, E. D., & Morgan, J. R. (2021) · The Journal of Physiology · doi:10.1113/jp279214 · Cited by 25 · see citing works
“2C), do not stop locomotion but instead change locomotor frequency, timing, or swim speed (Orger et al. 2008; Huang et al. 2013; Severi et al. 2014; Liu et al. 2019).”
BackgroundSelf-citationNeuromodulation and Behavioral Flexibility in Larval Zebrafish: From Neurotransmitters to Circuits
Corradi, L., & Filosa, A. (2021) · Frontiers in Molecular Neuroscience · doi:10.3389/fnmol.2021.718951 · Cited by 28 · see citing works
Responses of cerebellar Purkinje cells during fictive optomotor behavior in larval zebrafish
Scalise, K., Shimizu, T., Hibi, M., & Sawtell, N. B. (2016) · Journal of Neurophysiology · doi:10.1152/jn.00042.2016 · Cited by 27 · see citing works
“Larval zebrafish control swim speed by adjusting a small number of swim bout parameters, namely, bout frequency, bout duration, and tail-beat frequency (Budick and O’Malley 2000; Buss and Drapeau 2001; Masino and Fetcho 2005; Severi et al. 2014).”
BackgroundRovira, M., Arrey, G., & Planas, J. V. (2017) · Frontiers in Physiology · doi:10.3389/fphys.2017.01063 · Cited by 28 · see citing works
“…applied in studies on muscle growth and development, metabolism, neurobiology and aging (Pelster et al., 2003; McClelland et al., 2006; LeMoine et al., 2010a; Palstra et al., 2010, 2014; Gabriel et al., 2011; Fiaz et al., 2014; Gilbert et al., 2014; Severi et al., 2014; Hasumura and Meguro, 2016).”
BackgroundModular circuit organization for speed control of locomotor movements
Manira, A. E. (2023) · Current Opinion in Neurobiology · doi:10.1016/j.conb.2023.102760 · Cited by 23 · see citing works
Dabiri, J. O., Colin, S. P., Gemmell, B. J., Lucas, K. N., Leftwich, M. C., & Costello, J. H. (2020) · Fluids · doi:10.3390/fluids5030106 · Cited by 26 · see citing works
“By contrast, the zebrafish Danio rerio represents the evolution of a bilaterally symmetric body plan with comparatively complex neuromuscular organization representative of modern fish species [20].”
BackgroundPalmér, T., Ek, F., Enqvist, O., Olsson, R., Åström, K., & Petersson, P. (2017) · Scientific Reports · doi:10.1038/s41598-017-03144-7 · Cited by 25 · see citing works
Bishop, B. H., Spence-Chorman, N., & Gahtan, E. (2016) · Journal of Experimental Biology · doi:10.1242/jeb.147124 · Cited by 21 · see citing works
“In zebrafish larvae, lasers have been used to ablate individual descending neurons (Severi et al., 2014) and lesion methods linked to gene expression have been used to silence molecular classes of descending neurons (Del Bene et al., 2010).”
MethodA CPG‐Based Versatile Control Framework for Metameric Earthworm‐Like Robotic Locomotion
Zhou, Q., Xu, J., & Fang, H. (2023) · Advanced Science · doi:10.1002/advs.202206336 · Cited by 25 · see citing works
Goc, G. L., Lafaye, J., Karpenko, S., Bormuth, V., Candelier, R., & Debrégeas, G. (2021) · BMC Biology · doi:10.1186/s12915-021-01126-w · Cited by 18 · see citing works
“The circuits regulating specific locomotor features, such as the bout frequency [39] or orientational persistence [25, 26] have been identified.”
Backgrounddel Pozo, A., Manuel, R., González, A. B. I., et al. (2020) · eNeuro · doi:10.1523/eneuro.0047-20.2020 · Cited by 25 · see citing works
“The initiation requires the onset of alternating contractions and tail amplitude is used to modify speed within the slow swim, whereas the acceleration to fast swim transfers the focus to the tail beat frequency (Severi et al., 2014).”
SAMPL is a high-throughput solution to study unconstrained vertical behavior in small animals
Zhu, Y., Auer, F., Gelnaw, H., Davis, S. N., Hamling, K. R., May, C. E., Ahamed, H., Ringstad, N., Nagel, K. I., & Schoppik, D. (2023) · Cell Reports · doi:10.1016/j.celrep.2023.112573 · Cited by 17 · see citing works
“72 Like other attempts to preserve high-resolution kinematic information while accommodating natural unconstrained behavior, 22,73–78 SAMPL sits between these two extremes, joining other open-source software packages such as Stytra 79 and Zebrazoom.”
BackgroundKawano, K., Kato, K., Sugioka, T., Kimura, Y., Tanimoto, M., & Higashijima, S. (2022) · Scientific Reports · doi:10.1038/s41598-022-08283-0 · Cited by 23 · see citing works
Parallel locomotor control strategies in mice and flies
Gonçalves, A. I., Zavatone-Veth, J. A., Carey, M. R., & Clark, D. A. (2022) · Current Opinion in Neurobiology · doi:10.1016/j.conb.2022.01.001 · Cited by 20 · see citing works
Optimizing assays of zebrafish larvae swimming performance for drug discovery
Widrick, J. J., Lambert, M. R., Kunkel, L. M., & Beggs, A. H. (2023) · Expert Opinion on Drug Discovery · doi:10.1080/17460441.2023.2211802 · Cited by 21 · see citing works
“Zebrafish larvae can attain speeds of up to 30 mm/s for several seconds [64].”
BackgroundStorage of neural histamine and histaminergic neurotransmission is VMAT2 dependent in the zebrafish
Puttonen, H. A. J., Semenova, S. A., Sundvik, M., & Panula, P. (2017) · Scientific Reports · doi:10.1038/s41598-017-02981-w · Cited by 19 · see citing works
Narayanan, S., Varma, A., & Thirumalai, V. (2024) · Science Advances · doi:10.1126/sciadv.adi6470 · Cited by 21 · see citing works
“In head-restrained larval zebrafish, the latency to generate swim response depends on multiple parameters such as the flow velocity and the sensorimotor feedback ( 28 , 30 , 31 ).”
BackgroundPositive taxis and sustained responsiveness to water motions in larval zebrafish
Groneberg, A. H., Herget, U., Ryu, S., & Marco, R. J. D. (2015) · Frontiers in Neural Circuits · doi:10.3389/fncir.2015.00009 · Cited by 19 · see citing works
“…imaging have been made (Friedrich et al., 2010; Renninger and Orger, 2013), and neural activity has been successfully correlated to eye and tail movements in zebrafish larvae exposed to whole-field visual stimuli (Ahrens et al., 2013; Kubo et al., 2014; Portugues et al., 2014; Severi et al., 2014).”
MethodUncovering multiscale structure in the variability of larval zebrafish navigation
Sridhar, G., Vergassola, M., Marques, J. C., Orger, M. B., Costa, A. C., & Wyart, C. (2024) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.2410254121 · Cited by 13 · see citing works
“…of a fish to be assigned to a given sensory context, has a strong diagonal component, indicating that most fish can be accurately classified – especially for optomotor assays that are well-known to reliably drive sensorimotor behavior (Severi et al. (2014, 2018)) (center of confusion matrix, Fig.”
Self-citationDijkstra, J. M., & Nagatsu, T. (2021) · Journal of Neural Transmission · doi:10.1007/s00702-021-02450-9 · Cited by 24 · see citing works
Xu, L., Guan, N. N., Huang, C., Hua, Y., & Song, J. (2021) · Current Biology · doi:10.1016/j.cub.2021.06.054 · Cited by 22 · see citing works
“optogenetic excitation resulted in forward locomotion.(51,52) The movement speed and duration could be enhanced by increasing the intensity and frequency of the stimulation.”
BackgroundResultLearning steers the ontogeny of an efficient hunting sequence in zebrafish larvae
Lagogiannis, K., Diana, G., & Meyer, M. P. (2020) · eLife · doi:10.7554/elife.55119 · Cited by 18 · see citing works
“, 2016) could be utilized to look for the brain structures that correlate with the changes in bout kinematics, such as bout duration (Severi et al., 2014), that drive changes in capture distance between naive and experienced larvae.”
BackgroundPark, C., Clements, K. N., Issa, F. A., & Ahn, S. (2018) · Frontiers in Neural Circuits · doi:10.3389/fncir.2018.00007 · Cited by 18 · see citing works
Giachello, C. N., Fan, Y. N., Landgraf, M., et al. (2021) · Scientific Reports · doi:10.1038/s41598-021-99868-8 · Cited by 17 · see citing works
Synaptic Encoding of Vestibular Sensation Regulates Movement Timing and CoordinationPreprint
Hamling, K. R., Harmon, K. E., Greaney, M. R., Dobler, Z., Kimura, Y., Higashijima, S., & Schoppik, D. (2021) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2021.07.05.451142 · Cited by 15 · see citing works
“In addition to descending tracts, vestibular information reaches the spinal cord through ascending vestibular neurons in the tangential nucleus [49, 61] that in turn synapse on to spinal-projecting midbrain neurons in the nucleus of the medial longitudinal fasciculus responsible for swim kinematics [57, 62, 63].”
BackgroundIndividual neuronal subtypes control initial myelin sheath growth and stabilization
Nelson, H. N., Treichel, A. J., Dankert, E. N., Martell, M. R., Kaiser, A. J., Trudel, A. G., Gronseth, J. R., Maas, S. T., Bergen, S. R., & Hines, J. H. (2020) · Neural Development · doi:10.1186/s13064-020-00149-3 · Cited by 18 · see citing works
- Authors
- Severi, K. E., Portugues, R., Marques, J. C., O’Malley, D. M., Orger, M. B., & Engert, F.
- Affiliations
- Northeastern University (US)
- Centro Champalimaud (PT)
- Harvard University (US)
- Corresponding author
- Engert, Florian
- Venue
- Neuron
- Publisher
- Elsevier BV
- Published
- 2014-08
- Volume
- 83
- Issue
- 3
- Pages
- 692-707
- ISSN
- 0896-6273 (ISSN-L)
- PMC
- PMC4126853
- OpenAlex
- W2087804776
- Semantic Scholar
- 5cbf1d16344870a0a587e8fd635a7c8bc307311f
- Cited by
- 239
- References
- 71
- Citations by year
- 2026: 14 · 2025: 23 · 2024: 25 · 2023: 25 · 2022: 14 · 2021: 27 · 2020: 23 · 2019: 11 · 2018: 21 · 2017: 22 · 2016: 17 · 2015: 12 · 2014: 5
- FWCI
- 9.30
- Type
- journal article
- Language
- en
- Open access
- bronze
- doi.org
- Licence
- Locations
- Neuron (publishedVersion)
- PubMed (publishedVersion)
- PubMed Central (acceptedVersion)
- Digital Access to Scholarship at Harvard (DASH) (Harvard University) (submittedVersion, cc-by)
- Funders
- National Institutes of Health (5r01da030304-04)
- National Institute on Drug Abuse (R01-DA030304)
- National Institute of Neurological Disorders and Stroke (U01NS090449, DP1NS082121, R24NS086601)
- National Center for Chronic Disease Prevention and Health Promotion (DP1NS082121)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Cell Biology › Zebrafish Biomedical Research Applications
- Life Sciences › Neuroscience › Cognitive Neuroscience › Motor Control and Adaptation
- Life Sciences › Neuroscience › Cellular and Molecular Neuroscience › Neuroscience and Neuropharmacology Research
- Keywords
- swimming speed, locomotion kinematics, zebrafish larvae, central pattern generator, tail beat frequency, gait, spinal cord
- MeSH terms
- Animals, Electric Stimulation, Larva, Locomotion, Motor Activity, Nerve Net, Neurons, Spinal Cord, Swimming, Time Factors, Zebrafish
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Claims read under definition version 3 (extract-v3) on 2026-09-28.
Classified by jev-1.13-20260917 (gold-guideline-v0.2) on 2026-09-28.
Cited sources are checked by gpt-6-sol.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
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