Cerebellar Neurodynamics Predict Decision Timing and Outcome on the Single-Trial Level

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Functional and pharmacological analyses of visual habituation learning in larval zebrafish

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Cerebellar Purkinje cells control posture in larval zebrafish (Danio rerio)Preprint

Auer, F., Nardone, K., Matsuda, K., Hibi, M., & Schoppik, D. (2024) · eLife · doi:10.7554/elife.97614 · Cited by 6 · see citing works

Cerebellar state estimation enables resilient coupling across behavioural domains

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Decoding Digital Visual Stimulation From Neural Manifold With Fuzzy Leaning on Cortical Oscillatory Dynamics

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A brainstem integrator for self-localization and positional homeostasisPreprint

Yang, E., Zwart, M., Rubinov, M., James, B., Wei, Z., Narayan, S., Vladimirov, N., Mensh, B. D., Fitzgerald, J. E., & Ahrens, M. B. (2021) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2021.11.26.468907 · Cited by 5 · see citing works

Functional and pharmacological analyses of visual habituation learning in larval zebrafishPreprint

Lamiré, L.-A., Haesemeyer, M., Engert, F., Granato, M., & Randlett, O. (2022) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2022.06.17.496451 · Cited by 5 · see citing works

Neural correlates of future volitional action in DrosophilaPreprint

Brezovec, L. E., Berger, A. B., Druckmann, S., & Clandinin, T. R. (2023) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2023.09.08.556917 · Cited by 5 · see citing works

Neural sequences underlying directed turning in Caenorhabditis elegans

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Distinct distributed neural dynamics predict pallium-dependent social approach

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Cerebellar Purkinje cells control posture in larval zebrafish (Danio rerio)

Auer, F., Nardone, K., Matsuda, K., Hibi, M., & Schoppik, D. (2025) · eLife · doi:10.7554/elife.97614.3 · Cited by 3 · see citing works

Short-term memory by distributed neural network oscillators in a simple nervous system

Dunn, R. L., Costello, C. M., Borchardt, J., Sprague, D., Chiu, G. C., Miller, J. M., L’Étoile, N. D., & Kato, S. (2025) · Current Biology · doi:10.1016/j.cub.2025.10.018 · Cited by 3 · see citing works

Inhibition drives habituation of a larval zebrafish visual responsePreprint

Lamiré, L.-A., Haesemeyer, M., Engert, F., Granato, M., & Randlett, O. (2023) · eLife · doi:10.7554/elife.84926.1 · Cited by 3 · see citing works

Developmental synaptic pruning sharpens neural representations for predictive motor controlPreprint

Verma, S., Chandra, S., Narayanan, S., Pathak, S., & Thirumalai, V. (2025) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2025.01.01.630979 · Cited by 3 · see citing works

Modulation of habenula axon terminals supports action-outcome associations in larval zebrafishPreprint

Paoli, E., Palieri, V., Shenoy, A., & Portugues, R. (2025) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2025.02.13.638047 · Cited by 3 · see citing works

Integrative functional optical imaging approaches: Optics, microfluidics, and machine learning for neuroscience in organoids and small-animal models

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A whole-brain analysis of functional connectivity and immediate early gene expression reveals functional network shifts after operant learning

Kasahara, K., Hikishima, K., Nakata, M., Tsurugizawa, T., Higo, N., & Doya, K. (2024) · NeuroImage · doi:10.1016/j.neuroimage.2024.120840 · Cited by 2 · see citing works

Altered locomotion and anxiety after exposure to SiO2 nanoparticles in larval zebrafish

Shen, P. Y., Wu, J., Pu, G., Huang, K., & Lin, Q. (2025) · Scientific Reports · doi:10.1038/s41598-025-02599-3 · Cited by 2 · see citing works

From Cerebellar Genes to Behaviors in Zebrafish

Hibi, M., & Shimizu, T. (2022) · Neuromethods · doi:10.1007/978-1-0716-2026-7_2 · Cited by 2 · see citing works

Ramp-to-threshold dynamics in a hindbrain population controls the timing of spontaneous saccades

Ramirez, A. D., & Aksay, E. R. F. (2021) · RePEc: Research Papers in Economics · Cited by 2 · see citing works

FABEL: Forecasting Animal Behavioral Events with Deep Learning-Based Computer VisionPreprint

Catto, A., O’Connor, R., Braunscheidel, K. M., Kenny, P. J., & Shen, L. (2024) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2024.03.15.584610 · Cited by 2 · see citing works

Whole-brain neural substrates of behavioral variability in the larval zebrafishPreprint

Manley, J., & Vaziri, A. (2024) · eLife · doi:10.7554/elife.97014.1 · Cited by 1 · see citing works

Neural Sequences Underlying Directed Turning in C. elegansPreprint

Kramer, T. S., Wan, F. K., Pugliese, S. M., Atanas, A. A., Hiser, A. W., Luo, J., Bueno, E., & Flavell, S. W. (2024) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2024.08.11.607076 · Cited by 2 · see citing works

Cerebellar involvement in self-timingPreprint

Boven, E., Pickford, J., Apps, R., & Cerminara, N. L. (2025) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2025.03.05.641568 · Cited by 2 · see citing works

Modulation of habenula axon terminals supports action-outcome associations in larval zebrafish

Paoli, E., Palieri, V., Shenoy, A., & Portugues, R. (2026) · Nature Communications · doi:10.1038/s41467-026-76267-z · Cited by 4 · see citing works

Cerebellum and Decision-Making

Deverett, B., & Oostland, M. (2023) · Springer eBooks · doi:10.1007/978-3-031-15070-8_60 · Cited by 1 · see citing works

Fish-on-Chips: unveiling neural processing of chemicals in small animals through precise fluidic control

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States Are A-Changing, Complex Spikes Proclaim

Popa, L. S., Aronson, J. D., & Ebner, T. J. (2021) · Contemporary clinical neuroscience · doi:10.1007/978-3-030-75817-2_12 · Cited by 1 · see citing works

Ramp-to-Threshold Dynamics in a Hindbrain Population Controls the Timing of Spontaneous SaccadesPreprint

Ramirez, A. D., & Aksay, E. R. F. (2018) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/430645 · Cited by 1 · see citing works

High activity and high functional connectivity are mutually exclusive in resting state zebrafish and human brainsPreprint

Zarei, M., Xie, D., Jiang, F., Abigrove, A., Huang, B., Raj, A., Nagarajan, S. S., & Guo, S. (2021) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2021.06.02.446741 · Cited by 1 · see citing works

Deducing ensemble dynamics and information flow from the whole-brain imaging dataPreprint

Toyoshima, Y., Sato, H., Nagata, D., Kanamori, M., Jang, M., Kuze, K., Oe, S., Teramoto, T., Iwasaki, Y., Yoshida, R., et al. (2022) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2022.11.18.517011 · Cited by 1 · see citing works

Parallel and convergent pathways for multifeature visual processing in larval zebrafish sensorimotor decision-makingPreprint

Slangewal, K., Aimon, S., Capelle, M. Q., Kämpf, F., Naumann, H., Baier, H., Slanchev, K., & Bahl, A. (2025) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2025.08.12.669772 · Cited by 1 · see citing works

Computational optical sectioning by phase-space imaging with an incoherent multiscale scattering modelPreprint

Zhang, Y., Lü, Z., Wu, J., Lin, X., Jiang, D. H., Cai, Y., Xie, J., Zhu, T., Ji, X., & Dai, Q. (2020) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2020.11.29.402958

Progress on Computational Ethology

Ren, W., Yu, S. P., & Zhang, Y. (2021) · Chinese Science Bulletin (Chinese Version) · doi:10.1360/tb-2021-0213

C. elegans behaviour and brain dynamics; a physical exploration

Rozemuller, W. M. (2023) · doi:10.5463/thesis.193

Functional and pharmacological analyses of visual habituation learning in larval zebrafishPreprint

Lamiré, L.-A., Haesemeyer, M., Engert, F., Granato, M., & Randlett, O. (2023) · eLife · doi:10.7554/elife.84926.2

A whole-brain analysis of functional connectivity and immediate early gene expression revealed functional network shifts after operant learningPreprint

Kasahara, K., Hikishima, K., Nakata, M., Tsurugizawa, T., Higo, N., & Doya, K. (2023) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2023.10.26.564278

Whole-brain neural substrates of behavioral variability in the larval zebrafishPreprint

Manley, J., & Vaziri, A. (2024) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2024.03.03.583208

Additional file 15 of High activity and high functional connectivity are mutually exclusive in resting state zebrafish and human brains

Zarei, M., Xie, D., Jiang, F., Bagirov, A., Huang, B., Raj, A., Nagarajan, S. S., & Guo, S. (2022) · Figshare · doi:10.6084/m9.figshare.19582444

Whole-brain neural substrates of behavioral variability in the larval zebrafishPreprint

Manley, J., & Vaziri, A. (2024) · eLife · doi:10.7554/elife.97014

Cerebellar Purkinje Cells Control Posture in Larval Zebrafish (Danio rerio)Preprint

Auer, F., Nardone, K., Matsuda, K., Hibi, M., & Schoppik, D. (2024) · eLife · doi:10.7554/elife.97614.1

Cerebellar Purkinje Cells Control Posture in Larval Zebrafish (Danio rerio)Preprint

Auer, F., Nardone, K., Matsuda, K., Hibi, M., & Schoppik, D. (2025) · eLife · doi:10.7554/elife.97614.2

Analysis of simultaneous recording of spontaneous EEG and fMRI

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From will to action: sequential cerebellar contributions to voluntary movement

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Global Brain Dynamics Embed the Motor Command Sequence of Caenorhabditis elegans

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Early Trajectory Prediction in Elite Athletes

Owens, C. B., de Boer, C., Gennari, G., Broersen, R., Pel, J. J. M., Miller, B., Clapp, W. C., van der Werf, Y. D., & Zeeuw, C. I. D. (2018) · The Cerebellum · doi:10.1007/s12311-018-0975-9 · Cited by 15 · see citing works

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